Protein–RNA interactions for Protein: Q9QXN0

Shroom3, Protein Shroom3, mousemouse

Predictions only

Length 1,986 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Shroom3Q9QXN0 Cmtm4-201ENSMUST00000179802 7734 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Shroom3Q9QXN0 Vmn1r17-201ENSMUST00000227186 2234 ntAPPRIS P2 BASIC16.38■□□□□ 0.21
Shroom3Q9QXN0 Simc1-201ENSMUST00000118072 2116 ntAPPRIS ALT2 TSL 5 BASIC16.38■□□□□ 0.21
Shroom3Q9QXN0 Pskh1-201ENSMUST00000049699 3255 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Shroom3Q9QXN0 Pcdhb22-201ENSMUST00000097609 2266 ntTSL 2 BASIC16.38■□□□□ 0.21
Shroom3Q9QXN0 Stxbp3-201ENSMUST00000102621 2419 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Shroom3Q9QXN0 Smarca4-201ENSMUST00000034707 6354 ntAPPRIS P3 TSL 1 (best) BASIC16.37■□□□□ 0.21
Shroom3Q9QXN0 Atg7-215ENSMUST00000183165 2012 ntTSL 5 BASIC16.37■□□□□ 0.21
Shroom3Q9QXN0 9530068E07Rik-201ENSMUST00000036952 2467 ntAPPRIS P2 TSL 1 (best) BASIC16.37■□□□□ 0.21
Shroom3Q9QXN0 Pola2-202ENSMUST00000165143 2397 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
Shroom3Q9QXN0 Rnf141-201ENSMUST00000106682 1101 ntAPPRIS P1 TSL 3 BASIC16.37■□□□□ 0.21
Shroom3Q9QXN0 Cgrrf1-204ENSMUST00000140114 419 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
Shroom3Q9QXN0 Snhg4-201ENSMUST00000181664 1190 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
Shroom3Q9QXN0 Rln3-201ENSMUST00000061923 634 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Shroom3Q9QXN0 1700025L06Rik-203ENSMUST00000211477 1623 ntTSL 5 BASIC16.37■□□□□ 0.21
Shroom3Q9QXN0 Ykt6-201ENSMUST00000002818 2541 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Shroom3Q9QXN0 Kctd1-202ENSMUST00000168989 3456 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Shroom3Q9QXN0 Lrch3-201ENSMUST00000023491 5536 ntAPPRIS P3 TSL 1 (best) BASIC16.37■□□□□ 0.21
Shroom3Q9QXN0 Wscd1-202ENSMUST00000108510 2956 ntAPPRIS P1 TSL 5 BASIC16.37■□□□□ 0.21
Shroom3Q9QXN0 Hnrnpd-211ENSMUST00000172361 6811 ntAPPRIS P4 TSL 1 (best) BASIC16.37■□□□□ 0.21
Shroom3Q9QXN0 Prkcb-201ENSMUST00000064921 2557 ntAPPRIS ALT2 TSL 1 (best) BASIC16.37■□□□□ 0.21
Shroom3Q9QXN0 App-201ENSMUST00000005406 3176 ntAPPRIS P2 TSL 1 (best) BASIC16.37■□□□□ 0.21
Shroom3Q9QXN0 Kcnd3-202ENSMUST00000098761 7169 ntAPPRIS ALT1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Shroom3Q9QXN0 Nox4-202ENSMUST00000068829 1861 ntAPPRIS ALT2 TSL 1 (best) BASIC16.37■□□□□ 0.21
Shroom3Q9QXN0 Lce1a1-201ENSMUST00000074142 705 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Shroom3Q9QXN0 Tmem128-201ENSMUST00000087511 1291 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Shroom3Q9QXN0 Inhba-202ENSMUST00000164993 1529 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Shroom3Q9QXN0 Cldn6-201ENSMUST00000024699 1506 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Shroom3Q9QXN0 Ankrd17-202ENSMUST00000081914 8057 ntAPPRIS ALT2 TSL 5 BASIC16.36■□□□□ 0.21
Shroom3Q9QXN0 Slc15a3-201ENSMUST00000025646 2345 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Shroom3Q9QXN0 Gm37166-201ENSMUST00000195473 2474 ntBASIC16.36■□□□□ 0.21
Shroom3Q9QXN0 Arid1b-201ENSMUST00000092723 7150 ntAPPRIS ALT2 TSL 5 BASIC16.36■□□□□ 0.21
Shroom3Q9QXN0 Dcaf17-203ENSMUST00000112159 2490 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
Shroom3Q9QXN0 Gpr142-202ENSMUST00000106584 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC16.36■□□□□ 0.21
Shroom3Q9QXN0 Gm15794-201ENSMUST00000120182 631 ntBASIC16.36■□□□□ 0.21
Shroom3Q9QXN0 Fbxo6-208ENSMUST00000168503 1240 ntAPPRIS P1 TSL 2 BASIC16.36■□□□□ 0.21
Shroom3Q9QXN0 Ankrd23-204ENSMUST00000194853 1073 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
Shroom3Q9QXN0 Gm45328-201ENSMUST00000210942 917 ntBASIC16.36■□□□□ 0.21
Shroom3Q9QXN0 Mrpl36-203ENSMUST00000222030 680 ntAPPRIS P1 TSL 3 BASIC16.36■□□□□ 0.21
Shroom3Q9QXN0 Bpifa3-201ENSMUST00000028984 1107 ntAPPRIS P3 TSL 1 (best) BASIC16.36■□□□□ 0.21
Shroom3Q9QXN0 Gpr142-201ENSMUST00000045319 1098 ntAPPRIS P3 TSL 1 (best) BASIC16.36■□□□□ 0.21
Shroom3Q9QXN0 Sftpb-201ENSMUST00000070437 1131 ntAPPRIS ALT2 TSL 5 BASIC16.36■□□□□ 0.21
Shroom3Q9QXN0 Ccdc69-201ENSMUST00000055040 1402 ntAPPRIS P2 TSL 1 (best) BASIC16.36■□□□□ 0.21
Shroom3Q9QXN0 Malsu1-203ENSMUST00000128616 2819 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Shroom3Q9QXN0 Panx1-202ENSMUST00000164273 5732 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Shroom3Q9QXN0 Gm13446-201ENSMUST00000124555 2033 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
Shroom3Q9QXN0 Slc1a6-201ENSMUST00000005490 2029 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Shroom3Q9QXN0 Chst5-201ENSMUST00000034430 2182 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Shroom3Q9QXN0 Rcc1-203ENSMUST00000105951 2326 ntAPPRIS P1 TSL 5 BASIC16.36■□□□□ 0.21
Shroom3Q9QXN0 Syt3-202ENSMUST00000118962 2494 ntAPPRIS P1 TSL 5 BASIC16.36■□□□□ 0.21
Shroom3Q9QXN0 Lrrc45-201ENSMUST00000026139 2492 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Shroom3Q9QXN0 Aqp1-201ENSMUST00000004774 2627 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
Shroom3Q9QXN0 Gck-202ENSMUST00000109822 1786 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
Shroom3Q9QXN0 Wdr41-203ENSMUST00000160115 2851 ntTSL 5 BASIC16.35■□□□□ 0.21
Shroom3Q9QXN0 Cidec-202ENSMUST00000113089 1720 ntAPPRIS P2 TSL 1 (best) BASIC16.35■□□□□ 0.21
Shroom3Q9QXN0 Gm6623-201ENSMUST00000173570 544 ntBASIC16.35■□□□□ 0.21
Shroom3Q9QXN0 Flg-202ENSMUST00000178008 768 ntAPPRIS ALT2 BASIC16.35■□□□□ 0.21
Shroom3Q9QXN0 Flg-205ENSMUST00000179250 765 ntAPPRIS ALT2 BASIC16.35■□□□□ 0.21
Shroom3Q9QXN0 Flg-206ENSMUST00000179477 768 ntAPPRIS ALT2 BASIC16.35■□□□□ 0.21
Shroom3Q9QXN0 Gm26887-201ENSMUST00000181282 547 ntTSL 5 BASIC16.35■□□□□ 0.21
Shroom3Q9QXN0 Gm43077-201ENSMUST00000200602 491 ntTSL 3 BASIC16.35■□□□□ 0.21
Shroom3Q9QXN0 Vegfa-201ENSMUST00000024747 2765 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
Shroom3Q9QXN0 Anapc7-201ENSMUST00000031422 2751 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Shroom3Q9QXN0 Med7-209ENSMUST00000170928 2390 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Shroom3Q9QXN0 Kcnq2-204ENSMUST00000103047 2899 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
Shroom3Q9QXN0 Actg1-202ENSMUST00000071555 1952 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Shroom3Q9QXN0 Casq1-201ENSMUST00000003554 1847 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Shroom3Q9QXN0 Chmp2b-201ENSMUST00000004965 1838 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Shroom3Q9QXN0 March2-201ENSMUST00000066121 3400 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
Shroom3Q9QXN0 Cd82-205ENSMUST00000116457 1683 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Shroom3Q9QXN0 Tox2-201ENSMUST00000099110 2166 ntAPPRIS ALT2 TSL 5 BASIC16.35■□□□□ 0.21
Shroom3Q9QXN0 Farp1-201ENSMUST00000026635 4885 ntAPPRIS P1 TSL 5 BASIC16.35■□□□□ 0.21
Shroom3Q9QXN0 Dmpk-203ENSMUST00000108474 2591 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
Shroom3Q9QXN0 Caln1-203ENSMUST00000111288 9327 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Shroom3Q9QXN0 Cd82-204ENSMUST00000111257 1003 ntAPPRIS P1 TSL 5 BASIC16.35■□□□□ 0.21
Shroom3Q9QXN0 Alkal1-201ENSMUST00000133144 971 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
Shroom3Q9QXN0 Birc2-201ENSMUST00000054878 378 ntBASIC16.35■□□□□ 0.21
Shroom3Q9QXN0 Rad51d-203ENSMUST00000092844 1228 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
Shroom3Q9QXN0 Bpifb3-201ENSMUST00000088950 1821 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Shroom3Q9QXN0 Spock3-204ENSMUST00000119068 3201 ntAPPRIS P3 TSL 5 BASIC16.34■□□□□ 0.21
Shroom3Q9QXN0 Degs1-201ENSMUST00000035295 2048 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Shroom3Q9QXN0 Sbk2-202ENSMUST00000182214 2236 ntAPPRIS P1 TSL 5 BASIC16.34■□□□□ 0.21
Shroom3Q9QXN0 Slc13a3-202ENSMUST00000109279 3131 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
Shroom3Q9QXN0 Tmem117-201ENSMUST00000080141 2781 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Shroom3Q9QXN0 Fam219b-202ENSMUST00000114200 3017 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Shroom3Q9QXN0 Sphk1-201ENSMUST00000063396 2659 ntAPPRIS ALT2 TSL 2 BASIC16.34■□□□□ 0.21
Shroom3Q9QXN0 Klhl33-202ENSMUST00000170855 1422 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
Shroom3Q9QXN0 Tm6sf2-201ENSMUST00000049197 1418 ntAPPRIS P3 TSL 1 (best) BASIC16.34■□□□□ 0.21
Shroom3Q9QXN0 Gm26891-201ENSMUST00000181644 2599 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
Shroom3Q9QXN0 Chrd-202ENSMUST00000115423 2417 ntTSL 2 BASIC16.34■□□□□ 0.21
Shroom3Q9QXN0 Mpst-202ENSMUST00000167140 1279 ntAPPRIS P1 TSL 5 BASIC16.34■□□□□ 0.21
Shroom3Q9QXN0 Gm9857-201ENSMUST00000050914 393 ntAPPRIS P1 BASIC16.34■□□□□ 0.21
Shroom3Q9QXN0 Nlgn2-201ENSMUST00000056484 5003 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Shroom3Q9QXN0 Serinc2-203ENSMUST00000122374 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
Shroom3Q9QXN0 Lrrtm1-203ENSMUST00000161677 2518 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Shroom3Q9QXN0 Gm26752-201ENSMUST00000181086 1537 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
Shroom3Q9QXN0 Gm14029-201ENSMUST00000151051 1348 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
Shroom3Q9QXN0 Myef2-201ENSMUST00000067780 2999 ntAPPRIS ALT2 TSL 5 BASIC16.34■□□□□ 0.21
Shroom3Q9QXN0 Prodh-201ENSMUST00000003620 2385 ntAPPRIS P2 TSL 1 (best) BASIC16.34■□□□□ 0.21
Shroom3Q9QXN0 Fbxo9-202ENSMUST00000085311 2155 ntAPPRIS ALT1 TSL 1 (best) BASIC16.34■□□□□ 0.21
Retrieved 100 of 76,532 protein–RNA pairs in 17.4 ms