Protein–RNA interactions for Protein: Q9ERP3

Trim54, Tripartite motif-containing protein 54, mousemouse

Predictions only

Length 366 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim54Q9ERP3 Coq8b-202ENSMUST00000108378 2276 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Trim54Q9ERP3 Klc1-202ENSMUST00000118471 2272 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
Trim54Q9ERP3 Gm42417-201ENSMUST00000191849 2256 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Trim54Q9ERP3 Adck1-204ENSMUST00000222695 2253 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Trim54Q9ERP3 Gm11729-201ENSMUST00000124901 713 ntTSL 3 BASIC17.68■□□□□ 0.42
Trim54Q9ERP3 Chd3os-202ENSMUST00000151617 389 ntTSL 3 BASIC17.68■□□□□ 0.42
Trim54Q9ERP3 Tsfm-207ENSMUST00000152054 655 ntTSL 3 BASIC17.68■□□□□ 0.42
Trim54Q9ERP3 H2-T-ps-201ENSMUST00000172538 1067 ntBASIC17.68■□□□□ 0.42
Trim54Q9ERP3 Cyhr1-204ENSMUST00000177359 1110 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
Trim54Q9ERP3 Bag2-203ENSMUST00000187602 378 ntTSL 2 BASIC17.68■□□□□ 0.42
Trim54Q9ERP3 Ino80dos-204ENSMUST00000188602 678 ntTSL 2 BASIC17.68■□□□□ 0.42
Trim54Q9ERP3 Gm29246-201ENSMUST00000189221 349 ntTSL 3 BASIC17.68■□□□□ 0.42
Trim54Q9ERP3 Fosl1-201ENSMUST00000025850 1707 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Trim54Q9ERP3 Tmem57-201ENSMUST00000030628 3826 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Trim54Q9ERP3 Cnksr1-201ENSMUST00000030645 2468 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Trim54Q9ERP3 Cd300c-201ENSMUST00000061637 690 ntAPPRIS ALT2 TSL 5 BASIC17.68■□□□□ 0.42
Trim54Q9ERP3 Cd300c-202ENSMUST00000092466 700 ntAPPRIS P5 TSL 5 BASIC17.68■□□□□ 0.42
Trim54Q9ERP3 Mlxip-202ENSMUST00000111596 2653 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
Trim54Q9ERP3 Mycn-202ENSMUST00000130990 2522 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Trim54Q9ERP3 Slc35b2-202ENSMUST00000223987 1766 ntBASIC17.68■□□□□ 0.42
Trim54Q9ERP3 Derl3-202ENSMUST00000217811 1316 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
Trim54Q9ERP3 Iqck-201ENSMUST00000098087 1503 ntAPPRIS ALT2 TSL 5 BASIC17.67■□□□□ 0.42
Trim54Q9ERP3 Cep83-201ENSMUST00000020212 3639 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Trim54Q9ERP3 Mettl21a-202ENSMUST00000114079 2030 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Trim54Q9ERP3 Disp3-201ENSMUST00000047720 5282 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
Trim54Q9ERP3 Cpox-201ENSMUST00000060077 3186 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Trim54Q9ERP3 Ing1-207ENSMUST00000211007 2241 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
Trim54Q9ERP3 Rmdn3-201ENSMUST00000094695 2249 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Trim54Q9ERP3 Acss2-201ENSMUST00000029135 2931 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Trim54Q9ERP3 Taf6l-213ENSMUST00000189739 1794 ntTSL 5 BASIC17.67■□□□□ 0.42
Trim54Q9ERP3 Trmt112-ps2-201ENSMUST00000117987 378 ntBASIC17.67■□□□□ 0.42
Trim54Q9ERP3 Syngr2-206ENSMUST00000177131 935 ntAPPRIS ALT2 TSL 3 BASIC17.67■□□□□ 0.42
Trim54Q9ERP3 Olfr572-203ENSMUST00000215782 1233 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
Trim54Q9ERP3 AC161829.1-201ENSMUST00000220298 281 ntBASIC17.67■□□□□ 0.42
Trim54Q9ERP3 AC159641.1-201ENSMUST00000221117 177 ntTSL 3 BASIC17.67■□□□□ 0.42
Trim54Q9ERP3 Zfyve21-204ENSMUST00000221375 1265 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
Trim54Q9ERP3 Olfr632-201ENSMUST00000098189 954 ntAPPRIS P1 BASIC17.67■□□□□ 0.42
Trim54Q9ERP3 Pdxdc1-202ENSMUST00000115802 2466 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
Trim54Q9ERP3 AC121598.2-201ENSMUST00000228376 2325 ntBASIC17.67■□□□□ 0.42
Trim54Q9ERP3 B3gat2-203ENSMUST00000144602 1488 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
Trim54Q9ERP3 Slc30a10-201ENSMUST00000061093 5836 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Trim54Q9ERP3 Proser2-201ENSMUST00000054254 2061 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Trim54Q9ERP3 Cep104-201ENSMUST00000047497 5151 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Trim54Q9ERP3 Abhd10-201ENSMUST00000066983 2848 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Trim54Q9ERP3 Tnfrsf13c-201ENSMUST00000089161 1906 ntAPPRIS P2 TSL 1 (best) BASIC17.66■□□□□ 0.42
Trim54Q9ERP3 Acss2-202ENSMUST00000065973 2876 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
Trim54Q9ERP3 Klf13-201ENSMUST00000063694 6396 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Trim54Q9ERP3 Mfsd13a-202ENSMUST00000128041 2223 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Trim54Q9ERP3 Tcf7l2-203ENSMUST00000111646 2839 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
Trim54Q9ERP3 Ints8-201ENSMUST00000044616 3433 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Trim54Q9ERP3 Naa10-206ENSMUST00000114391 834 ntTSL 5 BASIC17.66■□□□□ 0.42
Trim54Q9ERP3 Gm15510-201ENSMUST00000123644 1172 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
Trim54Q9ERP3 Rnf170-208ENSMUST00000153528 1026 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
Trim54Q9ERP3 Gm44357-201ENSMUST00000195897 142 ntBASIC17.66■□□□□ 0.42
Trim54Q9ERP3 Gm19658-201ENSMUST00000196231 138 ntBASIC17.66■□□□□ 0.42
Trim54Q9ERP3 Gm44367-201ENSMUST00000196836 138 ntBASIC17.66■□□□□ 0.42
Trim54Q9ERP3 Gm42456-201ENSMUST00000196840 387 ntTSL 3 BASIC17.66■□□□□ 0.42
Trim54Q9ERP3 Gm44350-201ENSMUST00000197197 138 ntBASIC17.66■□□□□ 0.42
Trim54Q9ERP3 Gm44390-201ENSMUST00000197533 144 ntBASIC17.66■□□□□ 0.42
Trim54Q9ERP3 Gm44313-201ENSMUST00000198018 138 ntBASIC17.66■□□□□ 0.42
Trim54Q9ERP3 Gm44486-201ENSMUST00000198508 138 ntBASIC17.66■□□□□ 0.42
Trim54Q9ERP3 Gm44314-201ENSMUST00000199263 138 ntBASIC17.66■□□□□ 0.42
Trim54Q9ERP3 Gm44394-201ENSMUST00000199558 138 ntBASIC17.66■□□□□ 0.42
Trim54Q9ERP3 Gm44484-201ENSMUST00000199873 138 ntBASIC17.66■□□□□ 0.42
Trim54Q9ERP3 Gm44466-201ENSMUST00000200264 138 ntBASIC17.66■□□□□ 0.42
Trim54Q9ERP3 Gm44359-201ENSMUST00000200671 138 ntBASIC17.66■□□□□ 0.42
Trim54Q9ERP3 Gm45669-201ENSMUST00000209808 459 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
Trim54Q9ERP3 Pard6a-204ENSMUST00000212352 1234 ntTSL 2 BASIC17.66■□□□□ 0.42
Trim54Q9ERP3 Timm13-204ENSMUST00000219896 542 ntTSL 3 BASIC17.66■□□□□ 0.42
Trim54Q9ERP3 Rfc4-201ENSMUST00000023598 1228 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Trim54Q9ERP3 Yipf2-202ENSMUST00000078572 1894 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Trim54Q9ERP3 Zmynd19-201ENSMUST00000028350 3903 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Trim54Q9ERP3 Zic1-201ENSMUST00000034927 5606 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Trim54Q9ERP3 Large1-204ENSMUST00000212459 4746 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Trim54Q9ERP3 Snap91-202ENSMUST00000074468 4336 ntAPPRIS ALT2 TSL 5 BASIC17.66■□□□□ 0.42
Trim54Q9ERP3 Mst1-204ENSMUST00000162886 2209 ntAPPRIS ALT2 TSL 5 BASIC17.66■□□□□ 0.42
Trim54Q9ERP3 Scarf2-201ENSMUST00000012161 3302 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Trim54Q9ERP3 Ccdc106-204ENSMUST00000207974 2492 ntTSL 2 BASIC17.65■□□□□ 0.42
Trim54Q9ERP3 Ptn-201ENSMUST00000101534 1614 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Trim54Q9ERP3 Arhgap39-202ENSMUST00000077821 4494 ntAPPRIS P3 TSL 1 (best) BASIC17.65■□□□□ 0.42
Trim54Q9ERP3 Ncoa5-201ENSMUST00000040381 3179 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Trim54Q9ERP3 S1pr5-201ENSMUST00000122088 2500 ntAPPRIS P1 TSL 2 BASIC17.65■□□□□ 0.42
Trim54Q9ERP3 Tigd3-201ENSMUST00000055911 2114 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Trim54Q9ERP3 Dusp14-205ENSMUST00000164891 1454 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Trim54Q9ERP3 Npcd-202ENSMUST00000089299 1453 ntAPPRIS P4 TSL 1 (best) BASIC17.65■□□□□ 0.42
Trim54Q9ERP3 Rasa2-201ENSMUST00000034984 5813 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Trim54Q9ERP3 Gm26549-201ENSMUST00000181112 1209 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
Trim54Q9ERP3 Krtcap3-208ENSMUST00000201937 889 ntAPPRIS P1 TSL 5 BASIC17.65■□□□□ 0.42
Trim54Q9ERP3 Snrpf-201ENSMUST00000020203 861 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Trim54Q9ERP3 CT009713.7-201ENSMUST00000224689 571 ntBASIC17.65■□□□□ 0.42
Trim54Q9ERP3 Gm10190-201ENSMUST00000086549 324 ntAPPRIS P1 BASIC17.65■□□□□ 0.42
Trim54Q9ERP3 Relb-201ENSMUST00000049912 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
Trim54Q9ERP3 Kat2b-ps-201ENSMUST00000128468 2490 ntBASIC17.65■□□□□ 0.42
Trim54Q9ERP3 Lrrc7-201ENSMUST00000106044 5918 ntAPPRIS ALT2 TSL 5 BASIC17.65■□□□□ 0.42
Trim54Q9ERP3 Gm9889-202ENSMUST00000206983 1577 ntBASIC17.65■□□□□ 0.42
Trim54Q9ERP3 Gm11620-201ENSMUST00000118770 1845 ntBASIC17.65■□□□□ 0.42
Trim54Q9ERP3 Gfy-201ENSMUST00000179443 1849 ntAPPRIS P1 TSL 5 BASIC17.65■□□□□ 0.42
Trim54Q9ERP3 Anks1-202ENSMUST00000088027 6781 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
Trim54Q9ERP3 Pofut1-203ENSMUST00000099192 1385 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
Trim54Q9ERP3 Zkscan3-202ENSMUST00000116433 1421 ntTSL 1 (best) BASIC17.64■□□□□ 0.42
Retrieved 100 of 76,532 protein–RNA pairs in 30.5 ms