Protein–RNA interactions for Protein: Q9DC48

Cdc40, Pre-mRNA-processing factor 17, mousemouse

Known RBP Predictions only

Length 579 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdc40Q9DC48 Zbtb25-201ENSMUST00000167011 1681 ntAPPRIS P1 TSL 2 BASIC15.21■□□□□ 0.03
Cdc40Q9DC48 Alk-201ENSMUST00000086639 4866 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Cdc40Q9DC48 Cadps2-201ENSMUST00000018122 4723 ntAPPRIS P3 TSL 5 BASIC15.21■□□□□ 0.03
Cdc40Q9DC48 Il9r-204ENSMUST00000142396 1542 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.03
Cdc40Q9DC48 Rsu1-201ENSMUST00000028059 1546 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Cdc40Q9DC48 Tsc22d2-201ENSMUST00000099090 9799 ntAPPRIS P3 TSL 3 BASIC15.21■□□□□ 0.03
Cdc40Q9DC48 Snph-203ENSMUST00000109875 4910 ntAPPRIS P3 TSL 1 (best) BASIC15.21■□□□□ 0.02
Cdc40Q9DC48 Slc6a8-206ENSMUST00000164449 2151 ntTSL 5 BASIC15.21■□□□□ 0.02
Cdc40Q9DC48 Hsf4-202ENSMUST00000163734 1630 ntTSL 1 (best) BASIC15.21■□□□□ 0.02
Cdc40Q9DC48 Gm16835-201ENSMUST00000140488 2809 ntTSL 1 (best) BASIC15.21■□□□□ 0.02
Cdc40Q9DC48 Gtpbp3-208ENSMUST00000168847 2803 ntAPPRIS ALT2 TSL 5 BASIC15.21■□□□□ 0.02
Cdc40Q9DC48 Nfat5-203ENSMUST00000125721 5899 ntAPPRIS ALT2 TSL 5 BASIC15.2■□□□□ 0.02
Cdc40Q9DC48 Kctd9-205ENSMUST00000152243 2528 ntTSL 2 BASIC15.2■□□□□ 0.02
Cdc40Q9DC48 H2-D1-202ENSMUST00000172785 2102 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Cdc40Q9DC48 Casd1-201ENSMUST00000015333 3961 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Cdc40Q9DC48 Pkn2-201ENSMUST00000043812 6207 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Cdc40Q9DC48 Prodh-201ENSMUST00000003620 2385 ntAPPRIS P2 TSL 1 (best) BASIC15.2■□□□□ 0.02
Cdc40Q9DC48 Stk33-201ENSMUST00000090414 2221 ntAPPRIS P1 TSL 5 BASIC15.2■□□□□ 0.02
Cdc40Q9DC48 Slmap-203ENSMUST00000102956 5476 ntAPPRIS P3 TSL 5 BASIC15.2■□□□□ 0.02
Cdc40Q9DC48 Lrp4-201ENSMUST00000028689 7926 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Cdc40Q9DC48 Bpifa3-202ENSMUST00000109746 1102 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
Cdc40Q9DC48 Gm13216-201ENSMUST00000117145 591 ntBASIC15.2■□□□□ 0.02
Cdc40Q9DC48 Blvrb-204ENSMUST00000133750 509 ntTSL 2 BASIC15.2■□□□□ 0.02
Cdc40Q9DC48 Mrps12-204ENSMUST00000171183 883 ntAPPRIS P1 TSL 2 BASIC15.2■□□□□ 0.02
Cdc40Q9DC48 Ndufb8-201ENSMUST00000026222 680 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Cdc40Q9DC48 Crb2-201ENSMUST00000050372 6372 ntAPPRIS P1 TSL 5 BASIC15.2■□□□□ 0.02
Cdc40Q9DC48 Nell1-201ENSMUST00000081872 6617 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Cdc40Q9DC48 Col13a1-204ENSMUST00000105453 2935 ntTSL 2 BASIC15.2■□□□□ 0.02
Cdc40Q9DC48 Actl10-201ENSMUST00000104928 1501 ntAPPRIS P1 BASIC15.2■□□□□ 0.02
Cdc40Q9DC48 4933427J07Rik-201ENSMUST00000156275 1533 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
Cdc40Q9DC48 Actl10-202ENSMUST00000226583 1501 ntBASIC15.2■□□□□ 0.02
Cdc40Q9DC48 Skp1a-203ENSMUST00000109072 1754 ntAPPRIS P1 TSL 5 BASIC15.2■□□□□ 0.02
Cdc40Q9DC48 Tmem56-203ENSMUST00000128909 6696 ntAPPRIS P2 TSL 1 (best) BASIC15.2■□□□□ 0.02
Cdc40Q9DC48 Tulp1-202ENSMUST00000114794 1738 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
Cdc40Q9DC48 Kcnk4-201ENSMUST00000025908 1715 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Cdc40Q9DC48 Irak2-203ENSMUST00000089023 1734 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
Cdc40Q9DC48 Zfp668-203ENSMUST00000106262 3169 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Cdc40Q9DC48 Cog6-204ENSMUST00000193432 2078 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
Cdc40Q9DC48 Cldn4-201ENSMUST00000051401 1816 ntAPPRIS P1 BASIC15.2■□□□□ 0.02
Cdc40Q9DC48 Seh1l-201ENSMUST00000025421 3516 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Cdc40Q9DC48 4933402J07Rik-201ENSMUST00000093342 1304 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Cdc40Q9DC48 Nsmf-203ENSMUST00000100334 2957 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
Cdc40Q9DC48 Hoxa10-201ENSMUST00000121043 1436 ntAPPRIS P1 TSL 2 BASIC15.19■□□□□ 0.02
Cdc40Q9DC48 Gpd1l-201ENSMUST00000084853 1436 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
Cdc40Q9DC48 Dph1-201ENSMUST00000044949 2139 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Cdc40Q9DC48 Gpd1-203ENSMUST00000162194 1515 ntTSL 5 BASIC15.19■□□□□ 0.02
Cdc40Q9DC48 Grwd1-201ENSMUST00000107723 1898 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Cdc40Q9DC48 Nfib-205ENSMUST00000107247 3267 ntAPPRIS P1 TSL 5 BASIC15.19■□□□□ 0.02
Cdc40Q9DC48 Matn4-201ENSMUST00000103103 2304 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Cdc40Q9DC48 Mir770-201ENSMUST00000103252 94 ntBASIC15.19■□□□□ 0.02
Cdc40Q9DC48 Tmsb10-202ENSMUST00000114049 690 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Cdc40Q9DC48 Gm37722-201ENSMUST00000193757 208 ntBASIC15.19■□□□□ 0.02
Cdc40Q9DC48 Gm26709-203ENSMUST00000223260 715 ntTSL 5 BASIC15.19■□□□□ 0.02
Cdc40Q9DC48 Pdcd2l-201ENSMUST00000002710 1295 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Cdc40Q9DC48 Etfb-201ENSMUST00000004729 893 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Cdc40Q9DC48 Fmnl3-203ENSMUST00000120633 4290 ntAPPRIS ALT2 TSL 5 BASIC15.19■□□□□ 0.02
Cdc40Q9DC48 Dclk2-208ENSMUST00000194452 2066 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
Cdc40Q9DC48 Mrpl49-201ENSMUST00000007482 1722 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Cdc40Q9DC48 Gm8909-201ENSMUST00000040467 1357 ntAPPRIS P2 TSL 1 (best) BASIC15.19■□□□□ 0.02
Cdc40Q9DC48 Gpr161-202ENSMUST00000178700 1827 ntAPPRIS ALT2 TSL 1 (best) BASIC15.19■□□□□ 0.02
Cdc40Q9DC48 Itga6-201ENSMUST00000028522 4310 ntAPPRIS P3 TSL 1 (best) BASIC15.19■□□□□ 0.02
Cdc40Q9DC48 Megf11-210ENSMUST00000164113 6018 ntTSL 5 BASIC15.19■□□□□ 0.02
Cdc40Q9DC48 Parg-201ENSMUST00000022470 4413 ntAPPRIS P2 TSL 1 (best) BASIC15.19■□□□□ 0.02
Cdc40Q9DC48 Pou2f2-202ENSMUST00000108413 1599 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
Cdc40Q9DC48 Tyk2-205ENSMUST00000214864 1662 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
Cdc40Q9DC48 Mst1-204ENSMUST00000162886 2209 ntAPPRIS ALT2 TSL 5 BASIC15.19■□□□□ 0.02
Cdc40Q9DC48 Arhgef9-216ENSMUST00000197206 2227 ntTSL 5 BASIC15.19■□□□□ 0.02
Cdc40Q9DC48 Eif2ak3-201ENSMUST00000034093 4513 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Cdc40Q9DC48 Arntl-204ENSMUST00000210238 2976 ntAPPRIS P1 TSL 5 BASIC15.18■□□□□ 0.02
Cdc40Q9DC48 Sgsm2-201ENSMUST00000057631 4743 ntAPPRIS P2 TSL 1 (best) BASIC15.18■□□□□ 0.02
Cdc40Q9DC48 Whrn-201ENSMUST00000063650 4016 ntAPPRIS ALT2 TSL 1 (best) BASIC15.18■□□□□ 0.02
Cdc40Q9DC48 Gm8839-201ENSMUST00000121279 1645 ntBASIC15.18■□□□□ 0.02
Cdc40Q9DC48 Eif4g3-203ENSMUST00000084215 8134 ntAPPRIS ALT2 TSL 5 BASIC15.18■□□□□ 0.02
Cdc40Q9DC48 Erich2-201ENSMUST00000100041 1749 ntAPPRIS P2 TSL 1 (best) BASIC15.18■□□□□ 0.02
Cdc40Q9DC48 Pacsin1-202ENSMUST00000097360 1800 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Cdc40Q9DC48 Fdxr-201ENSMUST00000021078 1948 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Cdc40Q9DC48 Gm21057-201ENSMUST00000206022 670 ntTSL 3 BASIC15.18■□□□□ 0.02
Cdc40Q9DC48 AC130713.1-201ENSMUST00000228853 1096 ntBASIC15.18■□□□□ 0.02
Cdc40Q9DC48 Thrsp-201ENSMUST00000043077 1277 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Cdc40Q9DC48 4933427E11Rik-201ENSMUST00000056711 1214 ntBASIC15.18■□□□□ 0.02
Cdc40Q9DC48 Rln3-201ENSMUST00000061923 634 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Cdc40Q9DC48 Gm26774-201ENSMUST00000181534 2401 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
Cdc40Q9DC48 Bnip2-203ENSMUST00000117450 1465 ntAPPRIS ALT2 TSL 1 (best) BASIC15.18■□□□□ 0.02
Cdc40Q9DC48 Cxcl12-202ENSMUST00000112866 1878 ntAPPRIS ALT1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Cdc40Q9DC48 Desi2-201ENSMUST00000027783 8802 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Cdc40Q9DC48 Eefsec-201ENSMUST00000165242 2679 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Cdc40Q9DC48 Fam181a-203ENSMUST00000191218 1419 ntAPPRIS P1 TSL 5 BASIC15.17■□□□□ 0.02
Cdc40Q9DC48 Naa50-204ENSMUST00000161326 4487 ntAPPRIS ALT1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Cdc40Q9DC48 Rab11b-203ENSMUST00000173860 1544 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
Cdc40Q9DC48 Casp3-201ENSMUST00000093517 1520 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Cdc40Q9DC48 Acsl3-205ENSMUST00000142704 2976 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Cdc40Q9DC48 Gm45412-201ENSMUST00000210217 2275 ntBASIC15.17■□□□□ 0.02
Cdc40Q9DC48 Clasrp-201ENSMUST00000086041 2180 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Cdc40Q9DC48 Pacsin3-202ENSMUST00000059566 1867 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Cdc40Q9DC48 B4galt3-205ENSMUST00000126699 1758 ntTSL 5 BASIC15.17■□□□□ 0.02
Cdc40Q9DC48 Hps5-202ENSMUST00000107653 4702 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
Cdc40Q9DC48 Rnls-201ENSMUST00000096114 1597 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Cdc40Q9DC48 Nrip1-201ENSMUST00000054178 4529 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Cdc40Q9DC48 Pdgfa-203ENSMUST00000110896 1363 ntAPPRIS P1 TSL 5 BASIC15.17■□□□□ 0.02
Cdc40Q9DC48 Zkscan8-202ENSMUST00000110481 728 ntTSL 2 BASIC15.17■□□□□ 0.02
Retrieved 100 of 76,532 protein–RNA pairs in 57.8 ms