Protein–RNA interactions for Protein: Q8CEC0

Nup88, Nuclear pore complex protein Nup88, mousemouse

Known RBP Predictions only

Length 753 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nup88Q8CEC0 Snip1-201ENSMUST00000052183 2345 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Nup88Q8CEC0 Lonp2-201ENSMUST00000034141 2860 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Nup88Q8CEC0 Ehmt2-204ENSMUST00000114033 3882 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
Nup88Q8CEC0 Trim25-202ENSMUST00000100627 1433 ntTSL 5 BASIC19.32■□□□□ 0.68
Nup88Q8CEC0 Cdca7l-201ENSMUST00000021592 2957 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Nup88Q8CEC0 Agpat1-201ENSMUST00000037489 2190 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Nup88Q8CEC0 Pqlc1-202ENSMUST00000091798 1989 ntAPPRIS P3 TSL 5 BASIC19.32■□□□□ 0.68
Nup88Q8CEC0 Dmap1-201ENSMUST00000102687 1566 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Nup88Q8CEC0 Eda-202ENSMUST00000113775 5088 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
Nup88Q8CEC0 Sept11-205ENSMUST00000201700 3478 ntAPPRIS ALT1 TSL 2 BASIC19.31■□□□□ 0.68
Nup88Q8CEC0 Gm26592-201ENSMUST00000180870 1730 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
Nup88Q8CEC0 Hdhd2-202ENSMUST00000097521 1716 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
Nup88Q8CEC0 Ndufv3-201ENSMUST00000046288 1537 ntAPPRIS P4 TSL 1 (best) BASIC19.31■□□□□ 0.68
Nup88Q8CEC0 Ppfibp1-201ENSMUST00000016631 4851 ntAPPRIS P3 TSL 1 (best) BASIC19.31■□□□□ 0.68
Nup88Q8CEC0 Mid1-206ENSMUST00000112107 3194 ntTSL 5 BASIC19.31■□□□□ 0.68
Nup88Q8CEC0 Adgra3-201ENSMUST00000030971 4480 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Nup88Q8CEC0 Trim67-202ENSMUST00000167588 8735 ntAPPRIS P1 TSL 5 BASIC19.31■□□□□ 0.68
Nup88Q8CEC0 Arhgef9-216ENSMUST00000197206 2227 ntTSL 5 BASIC19.31■□□□□ 0.68
Nup88Q8CEC0 Mrpl37-201ENSMUST00000030365 1498 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Nup88Q8CEC0 Bpifa3-202ENSMUST00000109746 1102 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
Nup88Q8CEC0 Echdc2-203ENSMUST00000116307 893 ntTSL 5 BASIC19.31■□□□□ 0.68
Nup88Q8CEC0 Gm28876-201ENSMUST00000188137 703 ntTSL 3 BASIC19.31■□□□□ 0.68
Nup88Q8CEC0 AC159205.3-201ENSMUST00000224614 874 ntBASIC19.31■□□□□ 0.68
Nup88Q8CEC0 Mrpl14-201ENSMUST00000024734 645 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Nup88Q8CEC0 Rpp25l-201ENSMUST00000038434 856 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Nup88Q8CEC0 Taar2-201ENSMUST00000079134 1020 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Nup88Q8CEC0 Ldlrad1-201ENSMUST00000094916 1093 ntAPPRIS P1 TSL 5 BASIC19.31■□□□□ 0.68
Nup88Q8CEC0 Gm16861-201ENSMUST00000181498 1647 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
Nup88Q8CEC0 She-201ENSMUST00000050401 5733 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Nup88Q8CEC0 Ddx51-201ENSMUST00000031478 4846 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Nup88Q8CEC0 Dap-201ENSMUST00000044524 1555 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Nup88Q8CEC0 Dhcr24-201ENSMUST00000047973 4028 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Nup88Q8CEC0 Mff-212ENSMUST00000162003 2087 ntTSL 5 BASIC19.31■□□□□ 0.68
Nup88Q8CEC0 Htr3a-201ENSMUST00000003826 2082 ntAPPRIS P2 TSL 1 (best) BASIC19.31■□□□□ 0.68
Nup88Q8CEC0 Coro1a-202ENSMUST00000106364 1747 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Nup88Q8CEC0 Wdr13-202ENSMUST00000115623 1749 ntAPPRIS P1 TSL 5 BASIC19.31■□□□□ 0.68
Nup88Q8CEC0 Zfp691-204ENSMUST00000179290 1721 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Nup88Q8CEC0 Slc6a1-204ENSMUST00000204074 1740 ntTSL 5 BASIC19.31■□□□□ 0.68
Nup88Q8CEC0 Disc1-201ENSMUST00000074562 2597 ntAPPRIS ALT2 TSL 5 BASIC19.31■□□□□ 0.68
Nup88Q8CEC0 Disc1-203ENSMUST00000098311 2597 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
Nup88Q8CEC0 Prss54-205ENSMUST00000213096 1501 ntAPPRIS P3 TSL 5 BASIC19.3■□□□□ 0.68
Nup88Q8CEC0 Hebp2-201ENSMUST00000020000 2535 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Nup88Q8CEC0 Phtf1-202ENSMUST00000063717 3327 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Nup88Q8CEC0 Gm1043-204ENSMUST00000207866 4296 ntAPPRIS P1 TSL 5 BASIC19.3■□□□□ 0.68
Nup88Q8CEC0 Utp18-201ENSMUST00000066888 2613 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Nup88Q8CEC0 Wdr45-201ENSMUST00000043045 1609 ntAPPRIS P2 TSL 1 (best) BASIC19.3■□□□□ 0.68
Nup88Q8CEC0 Tsc22d2-203ENSMUST00000199164 4659 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
Nup88Q8CEC0 Sh3glb1-202ENSMUST00000198254 5945 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
Nup88Q8CEC0 Gm13025-201ENSMUST00000141469 1163 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
Nup88Q8CEC0 Ndufs7-201ENSMUST00000020361 758 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Nup88Q8CEC0 Pagr1a-203ENSMUST00000206416 558 ntTSL 3 BASIC19.3■□□□□ 0.68
Nup88Q8CEC0 Insl6-201ENSMUST00000052380 708 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Nup88Q8CEC0 4933427E11Rik-201ENSMUST00000056711 1214 ntBASIC19.3■□□□□ 0.68
Nup88Q8CEC0 Tctex1d4-201ENSMUST00000062206 990 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Nup88Q8CEC0 Fthl17f-201ENSMUST00000097029 847 ntAPPRIS P1 BASIC19.3■□□□□ 0.68
Nup88Q8CEC0 Men1-205ENSMUST00000113501 2508 ntTSL 5 BASIC19.3■□□□□ 0.68
Nup88Q8CEC0 Apoa5-202ENSMUST00000121598 2515 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Nup88Q8CEC0 Kif5b-201ENSMUST00000025083 6032 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Nup88Q8CEC0 Fam199x-201ENSMUST00000047852 8299 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Nup88Q8CEC0 Zpr1-206ENSMUST00000156440 2984 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Nup88Q8CEC0 Kcnn1-207ENSMUST00000212509 1608 ntAPPRIS ALT2 TSL 5 BASIC19.29■□□□□ 0.68
Nup88Q8CEC0 Cadps2-201ENSMUST00000018122 4723 ntAPPRIS P3 TSL 5 BASIC19.29■□□□□ 0.68
Nup88Q8CEC0 Simc1-202ENSMUST00000121401 4819 ntAPPRIS P2 TSL 5 BASIC19.29■□□□□ 0.68
Nup88Q8CEC0 Celf6-204ENSMUST00000121266 2610 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
Nup88Q8CEC0 Bmt2-202ENSMUST00000203078 4462 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
Nup88Q8CEC0 Renbp-202ENSMUST00000116578 1418 ntAPPRIS P2 TSL 1 (best) BASIC19.29■□□□□ 0.68
Nup88Q8CEC0 Ube2d1-201ENSMUST00000020085 1431 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Nup88Q8CEC0 Sirt7-202ENSMUST00000106183 427 ntTSL 3 BASIC19.29■□□□□ 0.68
Nup88Q8CEC0 Gm11355-201ENSMUST00000121120 306 ntBASIC19.29■□□□□ 0.68
Nup88Q8CEC0 Surf1-201ENSMUST00000015934 1173 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Nup88Q8CEC0 Chst10-206ENSMUST00000194361 2996 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
Nup88Q8CEC0 Shc3-203ENSMUST00000223543 1241 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
Nup88Q8CEC0 Yipf4-201ENSMUST00000024873 2133 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Nup88Q8CEC0 Insl3-201ENSMUST00000034261 623 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Nup88Q8CEC0 Nt5c1a-201ENSMUST00000068262 1220 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Nup88Q8CEC0 C530025M09Rik-201ENSMUST00000099264 690 ntAPPRIS P1 BASIC19.29■□□□□ 0.68
Nup88Q8CEC0 Dnah9-202ENSMUST00000108691 2671 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
Nup88Q8CEC0 Dnajc25-201ENSMUST00000095070 4023 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Nup88Q8CEC0 Tmem132c-201ENSMUST00000119026 5134 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Nup88Q8CEC0 Ptpdc1-201ENSMUST00000035824 4402 ntAPPRIS P2 TSL 1 (best) BASIC19.29■□□□□ 0.68
Nup88Q8CEC0 Bnip2-201ENSMUST00000034754 2464 ntAPPRIS P4 TSL 1 (best) BASIC19.29■□□□□ 0.68
Nup88Q8CEC0 Tspoap1-202ENSMUST00000100644 7390 ntAPPRIS ALT2 TSL 5 BASIC19.29■□□□□ 0.68
Nup88Q8CEC0 Carmn-201ENSMUST00000181155 1778 ntTSL 2 BASIC19.29■□□□□ 0.68
Nup88Q8CEC0 Slco3a1-201ENSMUST00000026897 4589 ntAPPRIS P4 TSL 1 (best) BASIC19.29■□□□□ 0.68
Nup88Q8CEC0 Sppl3-201ENSMUST00000031530 3204 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Nup88Q8CEC0 Prr5l-201ENSMUST00000043845 2290 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Nup88Q8CEC0 Emc8-201ENSMUST00000034277 4942 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Nup88Q8CEC0 Ep300-201ENSMUST00000068387 9566 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Nup88Q8CEC0 Mtif3-201ENSMUST00000016654 2131 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Nup88Q8CEC0 Rnf208-202ENSMUST00000114355 1333 ntAPPRIS P1 BASIC19.28■□□□□ 0.68
Nup88Q8CEC0 Ankrd23-201ENSMUST00000054665 1964 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Nup88Q8CEC0 Krt27-201ENSMUST00000017732 1550 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Nup88Q8CEC0 Clip2-202ENSMUST00000100647 4994 ntAPPRIS P4 TSL 1 (best) BASIC19.28■□□□□ 0.68
Nup88Q8CEC0 Hoxa10-201ENSMUST00000121043 1436 ntAPPRIS P1 TSL 2 BASIC19.28■□□□□ 0.68
Nup88Q8CEC0 Tfeb-204ENSMUST00000113288 2328 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
Nup88Q8CEC0 Gfod2-203ENSMUST00000155038 951 ntTSL 2 BASIC19.28■□□□□ 0.68
Nup88Q8CEC0 Grb7-201ENSMUST00000019456 2397 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Nup88Q8CEC0 Klhdc8b-201ENSMUST00000035232 1897 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Nup88Q8CEC0 Cdk10-201ENSMUST00000036880 1642 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Nup88Q8CEC0 Gm7008-201ENSMUST00000038121 1366 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
Retrieved 100 of 76,532 protein–RNA pairs in 129.8 ms