Protein–RNA interactions for Protein: P55288

Cdh11, Cadherin-11, mousemouse

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdh11P55288 Banf1-201ENSMUST00000025762 735 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
Cdh11P55288 Gm11273-201ENSMUST00000044043 390 ntAPPRIS P1 BASIC14.96□□□□□ -0.01
Cdh11P55288 Cdon-202ENSMUST00000119129 7503 ntAPPRIS P1 TSL 5 BASIC14.96□□□□□ -0.01
Cdh11P55288 Chgb-201ENSMUST00000028826 2740 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
Cdh11P55288 Zbtb7c-201ENSMUST00000058997 4569 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.02
Cdh11P55288 Gaa-202ENSMUST00000106258 1369 ntTSL 1 (best) BASIC14.96□□□□□ -0.02
Cdh11P55288 Cpsf4-207ENSMUST00000162244 1387 ntAPPRIS P4 TSL 1 (best) BASIC14.96□□□□□ -0.02
Cdh11P55288 Seh1l-201ENSMUST00000025421 3516 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.02
Cdh11P55288 Tmem214-201ENSMUST00000114716 2220 ntAPPRIS ALT2 TSL 5 BASIC14.96□□□□□ -0.02
Cdh11P55288 Naa35-201ENSMUST00000022038 3793 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.02
Cdh11P55288 Aldh2-202ENSMUST00000129753 1799 ntTSL 1 (best) BASIC14.96□□□□□ -0.02
Cdh11P55288 Il3ra-203ENSMUST00000224163 2315 ntAPPRIS P2 BASIC14.95□□□□□ -0.02
Cdh11P55288 Fbxl15-201ENSMUST00000026256 1348 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
Cdh11P55288 Hnrnpl-202ENSMUST00000172529 1898 ntTSL 5 BASIC14.95□□□□□ -0.02
Cdh11P55288 Cnbd2-201ENSMUST00000037096 2277 ntAPPRIS P2 TSL 1 (best) BASIC14.95□□□□□ -0.02
Cdh11P55288 Fbxl3-206ENSMUST00000145693 3352 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
Cdh11P55288 Fignl2-202ENSMUST00000213610 4462 ntAPPRIS P1 TSL 5 BASIC14.95□□□□□ -0.02
Cdh11P55288 Vangl2-202ENSMUST00000111263 6528 ntAPPRIS P1 TSL 5 BASIC14.95□□□□□ -0.02
Cdh11P55288 Mapk8ip3-205ENSMUST00000119115 4173 ntAPPRIS ALT2 TSL 1 (best) BASIC14.95□□□□□ -0.02
Cdh11P55288 Rbpms2-201ENSMUST00000055844 1987 ntAPPRIS P2 TSL 1 (best) BASIC14.95□□□□□ -0.02
Cdh11P55288 Snapc3-201ENSMUST00000030206 1405 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
Cdh11P55288 Wasf2-201ENSMUST00000084241 5642 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
Cdh11P55288 Ddah2-204ENSMUST00000174493 1254 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
Cdh11P55288 Snrnp48-202ENSMUST00000178564 847 ntTSL 5 BASIC14.95□□□□□ -0.02
Cdh11P55288 Gm18959-201ENSMUST00000208954 655 ntBASIC14.95□□□□□ -0.02
Cdh11P55288 Chmp2a-203ENSMUST00000210587 930 ntAPPRIS P1 TSL 3 BASIC14.95□□□□□ -0.02
Cdh11P55288 AC130671.1-201ENSMUST00000227384 1237 ntBASIC14.95□□□□□ -0.02
Cdh11P55288 Agap1-204ENSMUST00000190096 4078 ntAPPRIS ALT2 TSL 1 (best) BASIC14.95□□□□□ -0.02
Cdh11P55288 Pacs2-202ENSMUST00000220541 3101 ntAPPRIS ALT2 TSL 1 (best) BASIC14.95□□□□□ -0.02
Cdh11P55288 Arpc5-201ENSMUST00000077755 1914 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
Cdh11P55288 Klf5-201ENSMUST00000005279 3352 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
Cdh11P55288 Taf6l-212ENSMUST00000177216 2167 ntAPPRIS P1 TSL 5 BASIC14.95□□□□□ -0.02
Cdh11P55288 Dlgap1-207ENSMUST00000133983 7173 ntAPPRIS ALT2 TSL 1 (best) BASIC14.95□□□□□ -0.02
Cdh11P55288 Nes-201ENSMUST00000090973 6126 ntAPPRIS P2 TSL 1 (best) BASIC14.95□□□□□ -0.02
Cdh11P55288 Abhd11-206ENSMUST00000154469 1473 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
Cdh11P55288 Arhgef9-216ENSMUST00000197206 2227 ntTSL 5 BASIC14.94□□□□□ -0.02
Cdh11P55288 Capn15-205ENSMUST00000212520 5216 ntAPPRIS ALT2 TSL 1 (best) BASIC14.94□□□□□ -0.02
Cdh11P55288 Rtn3-201ENSMUST00000025667 2841 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
Cdh11P55288 0610012G03Rik-201ENSMUST00000202722 1445 ntAPPRIS P1 BASIC14.94□□□□□ -0.02
Cdh11P55288 Eif4h-201ENSMUST00000036125 2367 ntAPPRIS ALT1 TSL 1 (best) BASIC14.94□□□□□ -0.02
Cdh11P55288 Tm4sf19-201ENSMUST00000115149 1257 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
Cdh11P55288 Arrdc4-202ENSMUST00000118110 1129 ntAPPRIS ALT2 TSL 1 (best) BASIC14.94□□□□□ -0.02
Cdh11P55288 Smim1-205ENSMUST00000131325 842 ntTSL 5 BASIC14.94□□□□□ -0.02
Cdh11P55288 4833413E03Rik-201ENSMUST00000013706 1091 ntTSL 5 BASIC14.94□□□□□ -0.02
Cdh11P55288 Ctsd-202ENSMUST00000151120 2127 ntAPPRIS P2 TSL 1 (best) BASIC14.94□□□□□ -0.02
Cdh11P55288 Fgf8-201ENSMUST00000026240 1117 ntAPPRIS P4 TSL 1 (best) BASIC14.94□□□□□ -0.02
Cdh11P55288 Slc25a31-201ENSMUST00000091184 2128 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
Cdh11P55288 Ankrd44-210ENSMUST00000179030 6140 ntAPPRIS P2 TSL 1 (best) BASIC14.94□□□□□ -0.02
Cdh11P55288 Irak1-205ENSMUST00000114353 1896 ntAPPRIS ALT2 TSL 5 BASIC14.94□□□□□ -0.02
Cdh11P55288 Cadps2-202ENSMUST00000069074 3935 ntTSL 5 BASIC14.94□□□□□ -0.02
Cdh11P55288 Nr1h2-201ENSMUST00000073488 1999 ntAPPRIS P3 TSL 1 (best) BASIC14.94□□□□□ -0.02
Cdh11P55288 Lrrfip2-201ENSMUST00000035078 3260 ntTSL 5 BASIC14.94□□□□□ -0.02
Cdh11P55288 Zfp668-201ENSMUST00000054415 5768 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
Cdh11P55288 Spg21-201ENSMUST00000034955 2680 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
Cdh11P55288 Mapk8ip3-201ENSMUST00000088345 5543 ntAPPRIS P3 TSL 1 (best) BASIC14.94□□□□□ -0.02
Cdh11P55288 Btbd1-201ENSMUST00000026093 3001 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
Cdh11P55288 2810408A11Rik-201ENSMUST00000018714 1485 ntAPPRIS ALT2 TSL 1 (best) BASIC14.94□□□□□ -0.02
Cdh11P55288 Adat2-201ENSMUST00000019944 1466 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
Cdh11P55288 Casp6-201ENSMUST00000029626 1456 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
Cdh11P55288 Mgat1-201ENSMUST00000081794 2976 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
Cdh11P55288 Fus-203ENSMUST00000106251 5536 ntAPPRIS P3 TSL 1 (best) BASIC14.94□□□□□ -0.02
Cdh11P55288 Tspan9-201ENSMUST00000032503 1405 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Cdh11P55288 Cadps2-205ENSMUST00000115358 4848 ntAPPRIS ALT2 TSL 5 BASIC14.93□□□□□ -0.02
Cdh11P55288 Gm16201-202ENSMUST00000139218 2330 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
Cdh11P55288 Rtp2-201ENSMUST00000061030 2421 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Cdh11P55288 Lactbl1-201ENSMUST00000178843 2954 ntAPPRIS P1 TSL 5 BASIC14.93□□□□□ -0.02
Cdh11P55288 Krt90-201ENSMUST00000023714 2534 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Cdh11P55288 Serf1-205ENSMUST00000152286 465 ntTSL 3 BASIC14.93□□□□□ -0.02
Cdh11P55288 Slc25a41-202ENSMUST00000169012 1172 ntAPPRIS ALT2 TSL 1 (best) BASIC14.93□□□□□ -0.02
Cdh11P55288 Zfas1-205ENSMUST00000189909 738 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
Cdh11P55288 Cebpg-201ENSMUST00000070191 914 ntAPPRIS P1 TSL 2 BASIC14.93□□□□□ -0.02
Cdh11P55288 3110070M22Rik-201ENSMUST00000099148 1123 ntAPPRIS P1 BASIC14.93□□□□□ -0.02
Cdh11P55288 Tmem150b-202ENSMUST00000086364 2822 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
Cdh11P55288 Lrrfip2-207ENSMUST00000197256 1819 ntTSL 5 BASIC14.93□□□□□ -0.02
Cdh11P55288 Pola2-202ENSMUST00000165143 2397 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
Cdh11P55288 Ccdc126-201ENSMUST00000055559 2351 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Cdh11P55288 Disc1-201ENSMUST00000074562 2597 ntAPPRIS ALT2 TSL 5 BASIC14.93□□□□□ -0.02
Cdh11P55288 Disc1-203ENSMUST00000098311 2597 ntAPPRIS ALT2 TSL 1 (best) BASIC14.93□□□□□ -0.02
Cdh11P55288 Ccdc17-201ENSMUST00000051869 2003 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Cdh11P55288 C130026I21Rik-201ENSMUST00000064341 1561 ntAPPRIS P3 TSL 1 (best) BASIC14.93□□□□□ -0.02
Cdh11P55288 Eva1c-202ENSMUST00000099543 1554 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
Cdh11P55288 Slc39a7-201ENSMUST00000025186 2244 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Cdh11P55288 Wbp4-201ENSMUST00000022601 3704 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Cdh11P55288 Rasgef1b-205ENSMUST00000161148 2430 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
Cdh11P55288 Tmem5-205ENSMUST00000140299 4793 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Cdh11P55288 6430548M08Rik-204ENSMUST00000108951 5531 ntAPPRIS ALT2 TSL 1 (best) BASIC14.93□□□□□ -0.02
Cdh11P55288 Ppp2r1b-204ENSMUST00000174628 2195 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
Cdh11P55288 Lrch1-205ENSMUST00000228252 3125 ntAPPRIS ALT2 BASIC14.92□□□□□ -0.02
Cdh11P55288 Itga5-201ENSMUST00000023128 4382 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
Cdh11P55288 Pacsin1-203ENSMUST00000114872 1647 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
Cdh11P55288 Pskh1-201ENSMUST00000049699 3255 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
Cdh11P55288 Izumo1r-204ENSMUST00000121116 726 ntTSL 2 BASIC14.92□□□□□ -0.02
Cdh11P55288 1810062O18Rik-202ENSMUST00000128848 745 ntTSL 3 BASIC14.92□□□□□ -0.02
Cdh11P55288 Gas5-203ENSMUST00000159119 665 ntTSL 5 BASIC14.92□□□□□ -0.02
Cdh11P55288 Gm17182-201ENSMUST00000163795 860 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
Cdh11P55288 Gm3764-209ENSMUST00000181550 1093 ntTSL 3 BASIC14.92□□□□□ -0.02
Cdh11P55288 Gadd45b-203ENSMUST00000220246 732 ntTSL 2 BASIC14.92□□□□□ -0.02
Cdh11P55288 Flt1-202ENSMUST00000031653 6895 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
Cdh11P55288 Aig1-205ENSMUST00000162610 1554 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
Cdh11P55288 Sh3yl1-201ENSMUST00000020997 1750 ntAPPRIS P3 TSL 1 (best) BASIC14.92□□□□□ -0.02
Retrieved 100 of 76,532 protein–RNA pairs in 26.8 ms