Protein–RNA interactions for Protein: P43241

Cdx2, Homeobox protein CDX-2, mousemouse

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx2P43241 Gm32050-201ENSMUST00000209793 638 ntTSL 3 BASIC15.53■□□□□ 0.08
Cdx2P43241 3830406C13Rik-207ENSMUST00000223927 1010 ntBASIC15.53■□□□□ 0.08
Cdx2P43241 AC090659.1-201ENSMUST00000224334 768 ntBASIC15.53■□□□□ 0.08
Cdx2P43241 AC225888.1-201ENSMUST00000227184 728 ntBASIC15.53■□□□□ 0.08
Cdx2P43241 Aqp12-201ENSMUST00000059676 1088 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Cdx2P43241 Usp21-201ENSMUST00000065941 2219 ntAPPRIS P2 TSL 1 (best) BASIC15.53■□□□□ 0.08
Cdx2P43241 Aire-213ENSMUST00000148469 1618 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
Cdx2P43241 Napa-201ENSMUST00000006181 2517 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Cdx2P43241 Shox2-202ENSMUST00000162060 1537 ntTSL 3 BASIC15.53■□□□□ 0.08
Cdx2P43241 Cyb5d2-201ENSMUST00000079681 2393 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Cdx2P43241 Alg3-201ENSMUST00000045918 1451 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
Cdx2P43241 Nagpa-203ENSMUST00000147567 2230 ntAPPRIS ALT2 TSL 1 (best) BASIC15.52■□□□□ 0.08
Cdx2P43241 Cbx2-201ENSMUST00000026662 3807 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
Cdx2P43241 Gm5837-201ENSMUST00000191844 1369 ntBASIC15.52■□□□□ 0.08
Cdx2P43241 Tfap2a-208ENSMUST00000224999 2058 ntAPPRIS ALT1 BASIC15.52■□□□□ 0.08
Cdx2P43241 Nr1d2-201ENSMUST00000090543 4663 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
Cdx2P43241 Ncor1-203ENSMUST00000069456 3171 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
Cdx2P43241 Pofut1-204ENSMUST00000109794 1688 ntTSL 5 BASIC15.52■□□□□ 0.08
Cdx2P43241 Man1c1-201ENSMUST00000038628 4285 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
Cdx2P43241 Trim68-201ENSMUST00000082175 2388 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
Cdx2P43241 Gm7222-201ENSMUST00000117512 906 ntBASIC15.52■□□□□ 0.08
Cdx2P43241 Hmgb1-208ENSMUST00000139443 923 ntTSL 2 BASIC15.52■□□□□ 0.08
Cdx2P43241 Triqk-201ENSMUST00000143186 888 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
Cdx2P43241 Flg-204ENSMUST00000178752 756 ntAPPRIS ALT2 BASIC15.52■□□□□ 0.08
Cdx2P43241 9130024F11Rik-204ENSMUST00000187927 517 ntTSL 5 BASIC15.52■□□□□ 0.08
Cdx2P43241 Zfp787-206ENSMUST00000208746 535 ntTSL 2 BASIC15.52■□□□□ 0.08
Cdx2P43241 AC110091.2-202ENSMUST00000216718 1148 ntTSL 5 BASIC15.52■□□□□ 0.08
Cdx2P43241 Gnmt-201ENSMUST00000002846 1035 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
Cdx2P43241 Polr2f-201ENSMUST00000040077 543 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
Cdx2P43241 Clasp2-204ENSMUST00000213663 2727 ntTSL 5 BASIC15.52■□□□□ 0.08
Cdx2P43241 Ing1-202ENSMUST00000209565 1971 ntTSL 1 (best) BASIC15.52■□□□□ 0.07
Cdx2P43241 Rhobtb3-201ENSMUST00000022078 4980 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
Cdx2P43241 Slc25a47-202ENSMUST00000221080 1890 ntTSL 1 (best) BASIC15.52■□□□□ 0.07
Cdx2P43241 Ttyh1-217ENSMUST00000206869 1491 ntTSL 1 (best) BASIC15.52■□□□□ 0.07
Cdx2P43241 AC122901.1-201ENSMUST00000214203 1790 ntBASIC15.52■□□□□ 0.07
Cdx2P43241 Zfyve19-201ENSMUST00000090174 2008 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Cdx2P43241 Map4k5-201ENSMUST00000049239 4452 ntAPPRIS ALT1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Cdx2P43241 Mzt1-201ENSMUST00000042662 2240 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Cdx2P43241 Nt5dc3-201ENSMUST00000099396 5952 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Cdx2P43241 Wdr61-203ENSMUST00000121204 1290 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Cdx2P43241 Gm14822-201ENSMUST00000122247 291 ntBASIC15.51■□□□□ 0.07
Cdx2P43241 Evx1-202ENSMUST00000129243 1034 ntTSL 3 BASIC15.51■□□□□ 0.07
Cdx2P43241 Ctcflos-201ENSMUST00000142165 469 ntTSL 3 BASIC15.51■□□□□ 0.07
Cdx2P43241 Gm25406-201ENSMUST00000157599 105 ntBASIC15.51■□□□□ 0.07
Cdx2P43241 Ighv1-15-201ENSMUST00000192077 351 ntAPPRIS P1 BASIC15.51■□□□□ 0.07
Cdx2P43241 Dcps-201ENSMUST00000034539 1274 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Cdx2P43241 Pld2-203ENSMUST00000108557 3655 ntAPPRIS ALT2 TSL 1 (best) BASIC15.51■□□□□ 0.07
Cdx2P43241 Rnf112-203ENSMUST00000102661 3118 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Cdx2P43241 Agbl5-215ENSMUST00000202060 3121 ntAPPRIS ALT2 TSL 1 (best) BASIC15.51■□□□□ 0.07
Cdx2P43241 Sec14l1-203ENSMUST00000103026 2589 ntAPPRIS ALT2 TSL 5 BASIC15.51■□□□□ 0.07
Cdx2P43241 Arhgef10-201ENSMUST00000084207 5528 ntAPPRIS P4 TSL 1 (best) BASIC15.51■□□□□ 0.07
Cdx2P43241 Actg1-202ENSMUST00000071555 1952 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Cdx2P43241 Blmh-201ENSMUST00000021197 2497 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
Cdx2P43241 Atp8b2-201ENSMUST00000069805 5559 ntAPPRIS ALT2 TSL 5 BASIC15.51■□□□□ 0.07
Cdx2P43241 B020017C02Rik-201ENSMUST00000197444 1688 ntBASIC15.51■□□□□ 0.07
Cdx2P43241 Icmt-201ENSMUST00000048892 4919 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Cdx2P43241 Gm26884-201ENSMUST00000181207 3074 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
Cdx2P43241 Ctbp2-201ENSMUST00000033269 2321 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Cdx2P43241 Cyp21a1-201ENSMUST00000025223 2058 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Cdx2P43241 Tmf1-201ENSMUST00000095664 5732 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Cdx2P43241 Spata2l-202ENSMUST00000166768 2707 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Cdx2P43241 Gm29456-201ENSMUST00000189894 768 ntTSL 3 BASIC15.5■□□□□ 0.07
Cdx2P43241 Gm36967-201ENSMUST00000193814 266 ntBASIC15.5■□□□□ 0.07
Cdx2P43241 Hist1h2ab-201ENSMUST00000078369 473 ntAPPRIS P1 BASIC15.5■□□□□ 0.07
Cdx2P43241 Rogdi-202ENSMUST00000090453 652 ntTSL 5 BASIC15.5■□□□□ 0.07
Cdx2P43241 9330111N05Rik-202ENSMUST00000181043 2449 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
Cdx2P43241 Larp1b-202ENSMUST00000048490 2354 ntAPPRIS P2 TSL 1 (best) BASIC15.5■□□□□ 0.07
Cdx2P43241 Tekt1-202ENSMUST00000108502 1403 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
Cdx2P43241 Hebp2-203ENSMUST00000214548 2083 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
Cdx2P43241 Mst1-204ENSMUST00000162886 2209 ntAPPRIS ALT2 TSL 5 BASIC15.49■□□□□ 0.07
Cdx2P43241 Relb-201ENSMUST00000049912 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC15.49■□□□□ 0.07
Cdx2P43241 Ilkap-201ENSMUST00000027534 1368 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Cdx2P43241 Ache-201ENSMUST00000024099 2186 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Cdx2P43241 4921511I17Rik-201ENSMUST00000220545 1341 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
Cdx2P43241 Ankra2-203ENSMUST00000123924 2328 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
Cdx2P43241 Pea15a-201ENSMUST00000013842 2501 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Cdx2P43241 Fam171a1-204ENSMUST00000115099 4149 ntAPPRIS P3 TSL 1 (best) BASIC15.49■□□□□ 0.07
Cdx2P43241 Trim24-201ENSMUST00000031859 4042 ntAPPRIS P3 TSL 1 (best) BASIC15.49■□□□□ 0.07
Cdx2P43241 Thap7-201ENSMUST00000100125 1248 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Cdx2P43241 Snhg15-203ENSMUST00000134527 675 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
Cdx2P43241 Pmf1-205ENSMUST00000193338 795 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
Cdx2P43241 Rpl31-205ENSMUST00000194746 703 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
Cdx2P43241 Gm45683-201ENSMUST00000210825 1247 ntBASIC15.49■□□□□ 0.07
Cdx2P43241 AC154621.1-201ENSMUST00000226155 1119 ntBASIC15.49■□□□□ 0.07
Cdx2P43241 Commd5-201ENSMUST00000068407 1037 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Cdx2P43241 Lhb-201ENSMUST00000072453 678 ntAPPRIS P1 TSL 2 BASIC15.49■□□□□ 0.07
Cdx2P43241 Hacd1-201ENSMUST00000074854 926 ntAPPRIS P1 TSL 5 BASIC15.49■□□□□ 0.07
Cdx2P43241 Efnb2-201ENSMUST00000001319 4793 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Cdx2P43241 Psmc4-201ENSMUST00000032824 1440 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Cdx2P43241 Lrrfip1-212ENSMUST00000189617 2155 ntAPPRIS ALT2 TSL 1 (best) BASIC15.49■□□□□ 0.07
Cdx2P43241 Thumpd3-201ENSMUST00000032398 2163 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Cdx2P43241 Ankra2-201ENSMUST00000022164 1755 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Cdx2P43241 Fbxo24-202ENSMUST00000111002 2306 ntTSL 5 BASIC15.49■□□□□ 0.07
Cdx2P43241 Trap1-201ENSMUST00000006137 2320 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Cdx2P43241 Map3k5-201ENSMUST00000095806 5450 ntAPPRIS P2 TSL 1 (best) BASIC15.49■□□□□ 0.07
Cdx2P43241 Arhgef16-201ENSMUST00000030898 2860 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
Cdx2P43241 Nsmf-205ENSMUST00000114386 2685 ntTSL 5 BASIC15.49■□□□□ 0.07
Cdx2P43241 Agap3-205ENSMUST00000199856 2685 ntTSL 5 BASIC15.49■□□□□ 0.07
Cdx2P43241 Prdm11-201ENSMUST00000111272 3012 ntAPPRIS P1 TSL 5 BASIC15.49■□□□□ 0.07
Cdx2P43241 Atp8b2-202ENSMUST00000107396 5705 ntAPPRIS ALT2 TSL 5 BASIC15.48■□□□□ 0.07
Retrieved 100 of 76,532 protein–RNA pairs in 32.4 ms