Protein–RNA interactions for Protein: P08121

Col3a1, Collagen alpha-1(III) chain, mousemouse

Predictions only

Length 1,464 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col3a1P08121 Egfl8-202ENSMUST00000097345 1064 ntAPPRIS ALT2 TSL 1 (best) BASIC19.45■□□□□ 0.7
Col3a1P08121 Dlgap1-206ENSMUST00000133717 2355 ntAPPRIS ALT2 TSL 5 BASIC19.45■□□□□ 0.7
Col3a1P08121 Gm26608-201ENSMUST00000180740 1954 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
Col3a1P08121 Gm36447-201ENSMUST00000201101 1978 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
Col3a1P08121 Tmem267-205ENSMUST00000223912 1789 ntAPPRIS P1 BASIC19.45■□□□□ 0.7
Col3a1P08121 Syt3-202ENSMUST00000118962 2494 ntAPPRIS P1 TSL 5 BASIC19.45■□□□□ 0.7
Col3a1P08121 Pou3f3-201ENSMUST00000054883 7409 ntAPPRIS P1 BASIC19.44■□□□□ 0.7
Col3a1P08121 Rgs9-202ENSMUST00000103062 1743 ntTSL 5 BASIC19.44■□□□□ 0.7
Col3a1P08121 Hsf4-201ENSMUST00000036127 1739 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Col3a1P08121 Nkpd1-201ENSMUST00000078908 2753 ntAPPRIS P2 TSL 1 (best) BASIC19.44■□□□□ 0.7
Col3a1P08121 Taz-202ENSMUST00000114180 1786 ntAPPRIS ALT1 TSL 5 BASIC19.44■□□□□ 0.7
Col3a1P08121 Stxbp3-205ENSMUST00000138552 1789 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
Col3a1P08121 Inhba-202ENSMUST00000164993 1529 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Col3a1P08121 Gm42743-201ENSMUST00000051089 1511 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
Col3a1P08121 Gm16183-201ENSMUST00000127527 1193 ntTSL 5 BASIC19.44■□□□□ 0.7
Col3a1P08121 Prss45-202ENSMUST00000146794 1208 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
Col3a1P08121 4930442P19Rik-201ENSMUST00000193163 1240 ntBASIC19.44■□□□□ 0.7
Col3a1P08121 Ap2s1-204ENSMUST00000205607 372 ntTSL 3 BASIC19.44■□□□□ 0.7
Col3a1P08121 Psmb5-202ENSMUST00000227257 622 ntBASIC19.44■□□□□ 0.7
Col3a1P08121 Saysd1-201ENSMUST00000059666 2315 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Col3a1P08121 Atg5-201ENSMUST00000039286 2352 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Col3a1P08121 Gm3928-201ENSMUST00000121141 1307 ntBASIC19.44■□□□□ 0.7
Col3a1P08121 Fam221a-202ENSMUST00000121903 1304 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
Col3a1P08121 Zcchc14-201ENSMUST00000046386 7444 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Col3a1P08121 Gpr150-201ENSMUST00000056130 2146 ntAPPRIS P1 BASIC19.44■□□□□ 0.7
Col3a1P08121 Dap3-202ENSMUST00000107491 1375 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
Col3a1P08121 Atp5a1-201ENSMUST00000026495 2471 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Col3a1P08121 Pcdhb22-201ENSMUST00000097609 2266 ntTSL 2 BASIC19.44■□□□□ 0.7
Col3a1P08121 Sorbs1-225ENSMUST00000226047 2582 ntAPPRIS ALT2 BASIC19.44■□□□□ 0.7
Col3a1P08121 Hp1bp3-205ENSMUST00000105827 5155 ntAPPRIS ALT2 TSL 5 BASIC19.43■□□□□ 0.7
Col3a1P08121 Gm13036-201ENSMUST00000117799 748 ntBASIC19.43■□□□□ 0.7
Col3a1P08121 Tbcc-201ENSMUST00000040434 1164 ntAPPRIS P1 BASIC19.43■□□□□ 0.7
Col3a1P08121 Gm5145-201ENSMUST00000095633 837 ntAPPRIS P1 BASIC19.43■□□□□ 0.7
Col3a1P08121 Fiz1-208ENSMUST00000208944 2306 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Col3a1P08121 Selenok-201ENSMUST00000112268 1678 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Col3a1P08121 Sctr-201ENSMUST00000072886 2012 ntAPPRIS P3 TSL 2 BASIC19.43■□□□□ 0.7
Col3a1P08121 Enoph1-201ENSMUST00000031268 1420 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Col3a1P08121 Snx11-202ENSMUST00000107661 2197 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Col3a1P08121 Irgc1-204ENSMUST00000205776 1835 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Col3a1P08121 Cnih1-201ENSMUST00000015903 1538 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Col3a1P08121 Rapsn-201ENSMUST00000050323 1606 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Col3a1P08121 Tmem254c-202ENSMUST00000100819 1211 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Col3a1P08121 Gm13962-201ENSMUST00000131512 611 ntTSL 5 BASIC19.42■□□□□ 0.7
Col3a1P08121 Psmb1-201ENSMUST00000014913 1036 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Col3a1P08121 Hsd3b2-203ENSMUST00000177651 1122 ntAPPRIS P1 TSL 5 BASIC19.42■□□□□ 0.7
Col3a1P08121 1700028B04Rik-202ENSMUST00000190841 971 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
Col3a1P08121 AC110091.2-202ENSMUST00000216718 1148 ntTSL 5 BASIC19.42■□□□□ 0.7
Col3a1P08121 Vgf-201ENSMUST00000041543 2553 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Col3a1P08121 Zbtb48-201ENSMUST00000066715 2218 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Col3a1P08121 Eml2-203ENSMUST00000120595 2255 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
Col3a1P08121 Tasp1-201ENSMUST00000046656 2480 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Col3a1P08121 Klf14-201ENSMUST00000101589 3056 ntAPPRIS P1 BASIC19.42■□□□□ 0.7
Col3a1P08121 Nfib-204ENSMUST00000107246 3075 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
Col3a1P08121 Cbarp-201ENSMUST00000105369 3121 ntAPPRIS P2 TSL 5 BASIC19.42■□□□□ 0.7
Col3a1P08121 Gipc2-201ENSMUST00000046614 1596 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Col3a1P08121 Gjb1-201ENSMUST00000052130 1565 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Col3a1P08121 Atmin-201ENSMUST00000109099 4877 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Col3a1P08121 Rnpep-202ENSMUST00000077340 2288 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Col3a1P08121 Agfg1-204ENSMUST00000186302 2352 ntAPPRIS ALT1 TSL 5 BASIC19.42■□□□□ 0.7
Col3a1P08121 Gm7222-201ENSMUST00000117512 906 ntBASIC19.41■□□□□ 0.7
Col3a1P08121 Mgarp-203ENSMUST00000141156 1246 ntAPPRIS ALT2 TSL 2 BASIC19.41■□□□□ 0.7
Col3a1P08121 Gm27646-201ENSMUST00000183989 110 ntBASIC19.41■□□□□ 0.7
Col3a1P08121 Gm44107-201ENSMUST00000203242 573 ntTSL 2 BASIC19.41■□□□□ 0.7
Col3a1P08121 AC117588.1-201ENSMUST00000228510 999 ntBASIC19.41■□□□□ 0.7
Col3a1P08121 Gm15743-202ENSMUST00000182690 1901 ntBASIC19.41■□□□□ 0.7
Col3a1P08121 Fbxo22-201ENSMUST00000034859 2112 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Col3a1P08121 Alg3-201ENSMUST00000045918 1451 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Col3a1P08121 Cyp4f14-202ENSMUST00000179434 2207 ntAPPRIS P1 TSL 5 BASIC19.41■□□□□ 0.7
Col3a1P08121 Cyp4f14-201ENSMUST00000054174 2207 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Col3a1P08121 Dbnl-202ENSMUST00000102928 2295 ntAPPRIS P3 TSL 1 (best) BASIC19.41■□□□□ 0.7
Col3a1P08121 Rassf7-208ENSMUST00000209500 1560 ntAPPRIS ALT2 TSL 5 BASIC19.41■□□□□ 0.7
Col3a1P08121 Erlin1-201ENSMUST00000071698 3228 ntAPPRIS P1 TSL 5 BASIC19.41■□□□□ 0.7
Col3a1P08121 Gm45774-201ENSMUST00000211992 2665 ntBASIC19.41■□□□□ 0.7
Col3a1P08121 Zdhhc1-203ENSMUST00000212303 2056 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Col3a1P08121 Cox6c-205ENSMUST00000156915 606 ntAPPRIS P1 TSL 5 BASIC19.41■□□□□ 0.7
Col3a1P08121 Gm16845-202ENSMUST00000216270 567 ntTSL 2 BASIC19.41■□□□□ 0.7
Col3a1P08121 Gm5364-201ENSMUST00000216789 889 ntBASIC19.41■□□□□ 0.7
Col3a1P08121 Gm28111-201ENSMUST00000187786 1393 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
Col3a1P08121 Cmc2-205ENSMUST00000148235 1459 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Col3a1P08121 Klhdc8b-201ENSMUST00000035232 1897 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Col3a1P08121 Abhd16a-201ENSMUST00000007251 1945 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Col3a1P08121 A930017K11Rik-201ENSMUST00000162431 2539 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Col3a1P08121 Rala-201ENSMUST00000009003 2688 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Col3a1P08121 Kif27-203ENSMUST00000225388 5121 ntAPPRIS P1 BASIC19.4■□□□□ 0.7
Col3a1P08121 Kalrn-208ENSMUST00000114961 6128 ntTSL 5 BASIC19.4■□□□□ 0.7
Col3a1P08121 Pofut1-204ENSMUST00000109794 1688 ntTSL 5 BASIC19.4■□□□□ 0.7
Col3a1P08121 Gm11779-201ENSMUST00000118541 368 ntBASIC19.4■□□□□ 0.7
Col3a1P08121 Tpt1-205ENSMUST00000142061 996 ntTSL 5 BASIC19.4■□□□□ 0.7
Col3a1P08121 Tdrkh-208ENSMUST00000200486 1231 ntTSL 3 BASIC19.4■□□□□ 0.7
Col3a1P08121 Gm18622-201ENSMUST00000219361 595 ntBASIC19.4■□□□□ 0.7
Col3a1P08121 Csrp2-207ENSMUST00000220409 780 ntTSL 2 BASIC19.4■□□□□ 0.7
Col3a1P08121 AC159106.1-201ENSMUST00000224421 690 ntBASIC19.4■□□□□ 0.7
Col3a1P08121 Krt84-201ENSMUST00000023720 2570 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Col3a1P08121 Psmc4-201ENSMUST00000032824 1440 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Col3a1P08121 Arntl-203ENSMUST00000210074 2554 ntTSL 1 (best) BASIC19.39■□□□□ 0.7
Col3a1P08121 Raxos1-201ENSMUST00000181100 2547 ntTSL 1 (best) BASIC19.39■□□□□ 0.7
Col3a1P08121 Mef2d-203ENSMUST00000107559 1791 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
Col3a1P08121 Gid8-201ENSMUST00000029090 1655 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Col3a1P08121 Eif2b5-201ENSMUST00000003320 3186 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Col3a1P08121 Gm37500-201ENSMUST00000192059 1443 ntBASIC19.39■□□□□ 0.69
Retrieved 100 of 76,532 protein–RNA pairs in 22.7 ms