Protein–RNA interactions for Protein: B1AR17

Chd3, Chromodomain helicase DNA-binding protein 3, mousemouse

Predictions only

Length 2,055 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chd3B1AR17 Sntg2-201ENSMUST00000021004 2411 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
Chd3B1AR17 Gm13036-201ENSMUST00000117799 748 ntBASIC15.99■□□□□ 0.15
Chd3B1AR17 Gm12497-201ENSMUST00000138778 237 ntBASIC15.99■□□□□ 0.15
Chd3B1AR17 Gm15234-201ENSMUST00000141485 1058 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
Chd3B1AR17 Gm28659-201ENSMUST00000188013 759 ntBASIC15.99■□□□□ 0.15
Chd3B1AR17 Bpifa3-201ENSMUST00000028984 1107 ntAPPRIS P3 TSL 1 (best) BASIC15.99■□□□□ 0.15
Chd3B1AR17 Rpl27-201ENSMUST00000077856 614 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
Chd3B1AR17 Gm26596-201ENSMUST00000180464 2655 ntBASIC15.99■□□□□ 0.15
Chd3B1AR17 Gm6858-201ENSMUST00000208582 1468 ntBASIC15.99■□□□□ 0.15
Chd3B1AR17 Dnajb14-201ENSMUST00000090178 9477 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
Chd3B1AR17 Acp7-201ENSMUST00000040112 1978 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
Chd3B1AR17 Adrb2-201ENSMUST00000053640 2143 ntAPPRIS P1 BASIC15.99■□□□□ 0.15
Chd3B1AR17 Nr1d2-201ENSMUST00000090543 4663 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
Chd3B1AR17 Nsmf-207ENSMUST00000116574 2863 ntTSL 5 BASIC15.98■□□□□ 0.15
Chd3B1AR17 Gm11452-201ENSMUST00000122376 690 ntBASIC15.98■□□□□ 0.15
Chd3B1AR17 Opn4-202ENSMUST00000168444 2075 ntAPPRIS ALT2 TSL 1 (best) BASIC15.98■□□□□ 0.15
Chd3B1AR17 Smim22-208ENSMUST00000185147 399 ntAPPRIS ALT2 TSL 2 BASIC15.98■□□□□ 0.15
Chd3B1AR17 Gm13830-205ENSMUST00000201195 1155 ntBASIC15.98■□□□□ 0.15
Chd3B1AR17 Zfp747-202ENSMUST00000205832 618 ntTSL 3 BASIC15.98■□□□□ 0.15
Chd3B1AR17 Gm44771-201ENSMUST00000206975 626 ntBASIC15.98■□□□□ 0.15
Chd3B1AR17 AC133183.1-201ENSMUST00000221229 429 ntAPPRIS P1 TSL 3 BASIC15.98■□□□□ 0.15
Chd3B1AR17 Methig1-201ENSMUST00000075675 1029 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
Chd3B1AR17 Fmnl2-201ENSMUST00000049483 5461 ntTSL 5 BASIC15.98■□□□□ 0.15
Chd3B1AR17 Rap2a-201ENSMUST00000062117 4191 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
Chd3B1AR17 Tprn-201ENSMUST00000114336 2787 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
Chd3B1AR17 Ostf1-201ENSMUST00000025631 2726 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
Chd3B1AR17 Map3k21-201ENSMUST00000034316 5693 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
Chd3B1AR17 Puf60-201ENSMUST00000002599 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC15.98■□□□□ 0.15
Chd3B1AR17 CT010456.1-201ENSMUST00000222465 1688 ntTSL 5 BASIC15.98■□□□□ 0.15
Chd3B1AR17 Rala-201ENSMUST00000009003 2688 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
Chd3B1AR17 Hps6-201ENSMUST00000099393 2696 ntAPPRIS P1 BASIC15.98■□□□□ 0.15
Chd3B1AR17 Platr15-201ENSMUST00000147128 768 ntTSL 5 BASIC15.98■□□□□ 0.15
Chd3B1AR17 5430416N02Rik-202ENSMUST00000181873 626 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
Chd3B1AR17 Zfyve21-204ENSMUST00000221375 1265 ntAPPRIS ALT2 TSL 1 (best) BASIC15.98■□□□□ 0.15
Chd3B1AR17 Pth1r-204ENSMUST00000198865 2201 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
Chd3B1AR17 Ccnl1-201ENSMUST00000029416 2169 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
Chd3B1AR17 Il7-203ENSMUST00000192202 2057 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
Chd3B1AR17 Cdc23-201ENSMUST00000025228 2084 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
Chd3B1AR17 Tuba1c-201ENSMUST00000058914 1977 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
Chd3B1AR17 Akt2-214ENSMUST00000167435 2865 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
Chd3B1AR17 Vegfa-201ENSMUST00000024747 2765 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
Chd3B1AR17 Casq1-201ENSMUST00000003554 1847 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
Chd3B1AR17 Chst13-201ENSMUST00000070890 1653 ntAPPRIS P1 TSL 3 BASIC15.97■□□□□ 0.15
Chd3B1AR17 Rhobtb3-201ENSMUST00000022078 4980 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
Chd3B1AR17 Nfib-205ENSMUST00000107247 3267 ntAPPRIS P1 TSL 5 BASIC15.97■□□□□ 0.15
Chd3B1AR17 Cyp11b2-201ENSMUST00000167634 1625 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
Chd3B1AR17 Slc44a1-201ENSMUST00000102911 3102 ntAPPRIS P2 TSL 1 (best) BASIC15.97■□□□□ 0.15
Chd3B1AR17 Kctd6-202ENSMUST00000170111 3052 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
Chd3B1AR17 Gm40773-201ENSMUST00000218113 1502 ntTSL 5 BASIC15.97■□□□□ 0.15
Chd3B1AR17 Nap1l1-201ENSMUST00000065917 1486 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
Chd3B1AR17 Lrch3-211ENSMUST00000170899 2752 ntAPPRIS ALT2 TSL 1 (best) BASIC15.97■□□□□ 0.15
Chd3B1AR17 Slc25a2-201ENSMUST00000058635 1369 ntAPPRIS P1 BASIC15.97■□□□□ 0.15
Chd3B1AR17 Gm21887-202ENSMUST00000179760 483 ntAPPRIS ALT2 TSL 5 BASIC15.97■□□□□ 0.15
Chd3B1AR17 Nptxr-201ENSMUST00000023057 5004 ntAPPRIS ALT2 TSL 1 (best) BASIC15.97■□□□□ 0.15
Chd3B1AR17 Phkg2-202ENSMUST00000121004 1840 ntAPPRIS P1 TSL 5 BASIC15.97■□□□□ 0.15
Chd3B1AR17 Cgn-204ENSMUST00000155485 2361 ntTSL 2 BASIC15.97■□□□□ 0.15
Chd3B1AR17 Gm8189-202ENSMUST00000211035 2039 ntTSL 5 BASIC15.97■□□□□ 0.15
Chd3B1AR17 Ubb-201ENSMUST00000019649 1499 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
Chd3B1AR17 Relt-201ENSMUST00000008462 2851 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
Chd3B1AR17 Zfp622-201ENSMUST00000061875 2802 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
Chd3B1AR17 D430001F17Rik-201ENSMUST00000141344 1858 ntTSL 5 BASIC15.97■□□□□ 0.15
Chd3B1AR17 Naprt-201ENSMUST00000023237 1890 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
Chd3B1AR17 Trmt112-ps2-201ENSMUST00000117987 378 ntBASIC15.96■□□□□ 0.15
Chd3B1AR17 Edf1-201ENSMUST00000015236 722 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
Chd3B1AR17 Prr3-202ENSMUST00000165613 767 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
Chd3B1AR17 Spata33-204ENSMUST00000212346 715 ntTSL 2 BASIC15.96■□□□□ 0.15
Chd3B1AR17 AL669916.2-201ENSMUST00000213219 358 ntTSL 2 BASIC15.96■□□□□ 0.15
Chd3B1AR17 Cbr2-201ENSMUST00000026148 1110 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
Chd3B1AR17 Dhx32-201ENSMUST00000033290 2955 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
Chd3B1AR17 Rgs6-206ENSMUST00000186309 1693 ntAPPRIS P4 TSL 5 BASIC15.96■□□□□ 0.15
Chd3B1AR17 Sigirr-203ENSMUST00000209294 1612 ntAPPRIS P2 TSL 1 (best) BASIC15.96■□□□□ 0.15
Chd3B1AR17 Bud23-201ENSMUST00000071677 1607 ntAPPRIS ALT2 TSL 1 (best) BASIC15.96■□□□□ 0.15
Chd3B1AR17 Fam221a-201ENSMUST00000060561 2730 ntAPPRIS P3 TSL 1 (best) BASIC15.96■□□□□ 0.15
Chd3B1AR17 Gal3st1-201ENSMUST00000063004 1879 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
Chd3B1AR17 Stxbp3-205ENSMUST00000138552 1789 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
Chd3B1AR17 Pcmt1-202ENSMUST00000159917 2491 ntAPPRIS P3 TSL 1 (best) BASIC15.96■□□□□ 0.15
Chd3B1AR17 Snx9-201ENSMUST00000002436 2411 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
Chd3B1AR17 Nat8f3-202ENSMUST00000168531 1347 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
Chd3B1AR17 Dok3-202ENSMUST00000223563 1644 ntAPPRIS P1 BASIC15.96■□□□□ 0.15
Chd3B1AR17 Katnbl1-201ENSMUST00000028552 2886 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
Chd3B1AR17 Gm25406-201ENSMUST00000157599 105 ntBASIC15.96■□□□□ 0.15
Chd3B1AR17 D030044L04Rik-201ENSMUST00000204220 1291 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
Chd3B1AR17 Pts-206ENSMUST00000214873 511 ntTSL 5 BASIC15.96■□□□□ 0.15
Chd3B1AR17 Scrt1-202ENSMUST00000164703 3478 ntAPPRIS P1 TSL 2 BASIC15.96■□□□□ 0.15
Chd3B1AR17 Adss-201ENSMUST00000016105 2771 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.14
Chd3B1AR17 Ube2i-207ENSMUST00000172868 2755 ntTSL 1 (best) BASIC15.96■□□□□ 0.14
Chd3B1AR17 Hebp2-203ENSMUST00000214548 2083 ntTSL 1 (best) BASIC15.96■□□□□ 0.14
Chd3B1AR17 Ccdc30-201ENSMUST00000044781 1464 ntTSL 1 (best) BASIC15.96■□□□□ 0.14
Chd3B1AR17 Krt84-201ENSMUST00000023720 2570 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
Chd3B1AR17 Sncaip-205ENSMUST00000178011 3433 ntAPPRIS P3 TSL 1 (best) BASIC15.95■□□□□ 0.14
Chd3B1AR17 Zbtb24-201ENSMUST00000080771 2844 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
Chd3B1AR17 Wdr1-201ENSMUST00000005234 3089 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
Chd3B1AR17 Krt73-201ENSMUST00000063292 2165 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
Chd3B1AR17 Slbp-205ENSMUST00000139518 1191 ntAPPRIS ALT2 TSL 2 BASIC15.95■□□□□ 0.14
Chd3B1AR17 AC161829.1-201ENSMUST00000220298 281 ntBASIC15.95■□□□□ 0.14
Chd3B1AR17 Krt6b-201ENSMUST00000023786 2226 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
Chd3B1AR17 Syngr3-201ENSMUST00000007236 1965 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
Chd3B1AR17 Cd164-201ENSMUST00000019962 2922 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
Chd3B1AR17 Klhl33-202ENSMUST00000170855 1422 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
Chd3B1AR17 Il3ra-203ENSMUST00000224163 2315 ntAPPRIS P2 BASIC15.95■□□□□ 0.14
Retrieved 100 of 76,532 protein–RNA pairs in 28.5 ms