Protein–RNA interactions for Protein: Q9D5Y1

Ccdc39, Coiled-coil domain-containing protein 39, mousemouse

Predictions only

Length 937 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc39Q9D5Y1 Rasgef1b-205ENSMUST00000161148 2430 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
Ccdc39Q9D5Y1 Rnf38-203ENSMUST00000102934 5240 ntAPPRIS P1 TSL 5 BASIC19.42■□□□□ 0.7
Ccdc39Q9D5Y1 Irak1-205ENSMUST00000114353 1896 ntAPPRIS ALT2 TSL 5 BASIC19.42■□□□□ 0.7
Ccdc39Q9D5Y1 Elk4-202ENSMUST00000086556 4433 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Ccdc39Q9D5Y1 Adal-203ENSMUST00000110662 1231 ntTSL 5 BASIC19.42■□□□□ 0.7
Ccdc39Q9D5Y1 Gm10052-201ENSMUST00000168019 960 ntBASIC19.42■□□□□ 0.7
Ccdc39Q9D5Y1 Gm20675-201ENSMUST00000175861 338 ntTSL 3 BASIC19.42■□□□□ 0.7
Ccdc39Q9D5Y1 AC124569.2-201ENSMUST00000225998 818 ntBASIC19.42■□□□□ 0.7
Ccdc39Q9D5Y1 Gm7729-201ENSMUST00000050143 801 ntBASIC19.42■□□□□ 0.7
Ccdc39Q9D5Y1 Cldn19-201ENSMUST00000084309 924 ntAPPRIS P4 TSL 1 (best) BASIC19.42■□□□□ 0.7
Ccdc39Q9D5Y1 Btbd11-203ENSMUST00000105307 5788 ntAPPRIS P3 TSL 1 (best) BASIC19.42■□□□□ 0.7
Ccdc39Q9D5Y1 Itgb7-201ENSMUST00000001327 2674 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Ccdc39Q9D5Y1 Igf2-205ENSMUST00000121128 4722 ntTSL 2 BASIC19.42■□□□□ 0.7
Ccdc39Q9D5Y1 Gss-203ENSMUST00000130881 1724 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
Ccdc39Q9D5Y1 Anxa2-201ENSMUST00000034756 1447 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Ccdc39Q9D5Y1 Haghl-201ENSMUST00000077938 1405 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Ccdc39Q9D5Y1 Strn-203ENSMUST00000145910 8629 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Ccdc39Q9D5Y1 Gm26526-201ENSMUST00000181075 2927 ntTSL 5 BASIC19.41■□□□□ 0.7
Ccdc39Q9D5Y1 Dusp14-205ENSMUST00000164891 1454 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Ccdc39Q9D5Y1 Yipf2-202ENSMUST00000078572 1894 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Ccdc39Q9D5Y1 Thsd7a-202ENSMUST00000119581 5678 ntAPPRIS P2 TSL 5 BASIC19.41■□□□□ 0.7
Ccdc39Q9D5Y1 Adck1-204ENSMUST00000222695 2253 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Ccdc39Q9D5Y1 Dlgap1-206ENSMUST00000133717 2355 ntAPPRIS ALT2 TSL 5 BASIC19.41■□□□□ 0.7
Ccdc39Q9D5Y1 Ubr3-202ENSMUST00000112251 8081 ntAPPRIS ALT2 TSL 5 BASIC19.41■□□□□ 0.7
Ccdc39Q9D5Y1 Adgra3-201ENSMUST00000030971 4480 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Ccdc39Q9D5Y1 Parg-208ENSMUST00000170840 2894 ntAPPRIS ALT2 TSL 5 BASIC19.41■□□□□ 0.7
Ccdc39Q9D5Y1 Chtf8-206ENSMUST00000177068 2931 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Ccdc39Q9D5Y1 Polr3e-203ENSMUST00000207481 2545 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
Ccdc39Q9D5Y1 Gm15295-201ENSMUST00000139874 488 ntTSL 5 BASIC19.41■□□□□ 0.7
Ccdc39Q9D5Y1 Npcd-201ENSMUST00000023060 1162 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
Ccdc39Q9D5Y1 Tbx18-201ENSMUST00000034991 4679 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Ccdc39Q9D5Y1 Spr-ps1-201ENSMUST00000089584 605 ntBASIC19.41■□□□□ 0.7
Ccdc39Q9D5Y1 Rgl2-201ENSMUST00000047503 3252 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Ccdc39Q9D5Y1 Rasal2-201ENSMUST00000078308 10047 ntAPPRIS P2 TSL 1 (best) BASIC19.41■□□□□ 0.7
Ccdc39Q9D5Y1 Mrs2-201ENSMUST00000021772 7035 ntAPPRIS P1 TSL 5 BASIC19.41■□□□□ 0.7
Ccdc39Q9D5Y1 Gnaz-201ENSMUST00000037813 3519 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Ccdc39Q9D5Y1 Gm7292-201ENSMUST00000194706 2527 ntBASIC19.41■□□□□ 0.7
Ccdc39Q9D5Y1 Dok3-201ENSMUST00000047877 1546 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Ccdc39Q9D5Y1 Xpo4-209ENSMUST00000174545 8680 ntAPPRIS P2 TSL 1 (best) BASIC19.41■□□□□ 0.7
Ccdc39Q9D5Y1 Sh3glb1-202ENSMUST00000198254 5945 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
Ccdc39Q9D5Y1 Slc35b2-202ENSMUST00000223987 1766 ntBASIC19.4■□□□□ 0.7
Ccdc39Q9D5Y1 Hand1-203ENSMUST00000160392 1806 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Ccdc39Q9D5Y1 Drd2-201ENSMUST00000075764 2547 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Ccdc39Q9D5Y1 Klk12-202ENSMUST00000107970 1115 ntAPPRIS P1 TSL 5 BASIC19.4■□□□□ 0.7
Ccdc39Q9D5Y1 Yif1b-203ENSMUST00000108238 1126 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
Ccdc39Q9D5Y1 Rnf181-203ENSMUST00000114095 869 ntTSL 3 BASIC19.4■□□□□ 0.7
Ccdc39Q9D5Y1 Tmem178b-203ENSMUST00000180886 712 ntTSL 5 BASIC19.4■□□□□ 0.7
Ccdc39Q9D5Y1 1810010D01Rik-204ENSMUST00000208788 889 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Ccdc39Q9D5Y1 Umpk-ps-201ENSMUST00000211897 827 ntBASIC19.4■□□□□ 0.7
Ccdc39Q9D5Y1 Gm11841-201ENSMUST00000117060 1963 ntBASIC19.4■□□□□ 0.7
Ccdc39Q9D5Y1 Shroom4-202ENSMUST00000103005 4839 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Ccdc39Q9D5Y1 Atp6v1b2-201ENSMUST00000006435 2825 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Ccdc39Q9D5Y1 Cdc42ep3-201ENSMUST00000068958 1967 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
Ccdc39Q9D5Y1 Bambi-201ENSMUST00000025075 5040 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Ccdc39Q9D5Y1 Gm14964-202ENSMUST00000149574 716 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
Ccdc39Q9D5Y1 Vegfc-203ENSMUST00000210831 555 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
Ccdc39Q9D5Y1 Tesc-201ENSMUST00000031304 1031 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Ccdc39Q9D5Y1 Nudt16l1-201ENSMUST00000050881 1269 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Ccdc39Q9D5Y1 Ifi27l2a-201ENSMUST00000055071 463 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Ccdc39Q9D5Y1 Zbtb22-201ENSMUST00000053429 2611 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Ccdc39Q9D5Y1 Ankrd17-202ENSMUST00000081914 8057 ntAPPRIS ALT2 TSL 5 BASIC19.39■□□□□ 0.69
Ccdc39Q9D5Y1 Tmem176a-201ENSMUST00000101426 1540 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Ccdc39Q9D5Y1 Ptp4a2-201ENSMUST00000030578 3646 ntAPPRIS P1 TSL 5 BASIC19.39■□□□□ 0.69
Ccdc39Q9D5Y1 Baz1a-205ENSMUST00000173433 5788 ntAPPRIS P2 TSL 5 BASIC19.39■□□□□ 0.69
Ccdc39Q9D5Y1 Cep104-201ENSMUST00000047497 5151 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Ccdc39Q9D5Y1 Mipep-201ENSMUST00000063562 3015 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Ccdc39Q9D5Y1 Susd1-202ENSMUST00000107544 3220 ntAPPRIS ALT2 TSL 5 BASIC19.38■□□□□ 0.69
Ccdc39Q9D5Y1 Taok3-203ENSMUST00000111978 4467 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Ccdc39Q9D5Y1 Ermp1-203ENSMUST00000159692 7058 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Ccdc39Q9D5Y1 Hikeshi-207ENSMUST00000207309 835 ntTSL 5 BASIC19.38■□□□□ 0.69
Ccdc39Q9D5Y1 Fiz1-208ENSMUST00000208944 2306 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Ccdc39Q9D5Y1 Slc2a8-201ENSMUST00000028129 2108 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Ccdc39Q9D5Y1 Agpat3-203ENSMUST00000105388 3681 ntAPPRIS P1 TSL 5 BASIC19.38■□□□□ 0.69
Ccdc39Q9D5Y1 Slc47a1-201ENSMUST00000010267 2639 ntAPPRIS P1 TSL 2 BASIC19.38■□□□□ 0.69
Ccdc39Q9D5Y1 Dph1-201ENSMUST00000044949 2139 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Ccdc39Q9D5Y1 Mdm1-204ENSMUST00000169817 2022 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
Ccdc39Q9D5Y1 BC051019-202ENSMUST00000106735 1957 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Ccdc39Q9D5Y1 Psen2-205ENSMUST00000111108 1997 ntAPPRIS P2 TSL 1 (best) BASIC19.37■□□□□ 0.69
Ccdc39Q9D5Y1 Tgfb1i1-205ENSMUST00000165667 1812 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
Ccdc39Q9D5Y1 Tpm1-215ENSMUST00000113705 1759 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
Ccdc39Q9D5Y1 Slc25a20-201ENSMUST00000035222 1783 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Ccdc39Q9D5Y1 Anks1-202ENSMUST00000088027 6781 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
Ccdc39Q9D5Y1 Cend1-201ENSMUST00000084436 1672 ntAPPRIS P1 TSL 5 BASIC19.37■□□□□ 0.69
Ccdc39Q9D5Y1 Mras-203ENSMUST00000122384 1122 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Ccdc39Q9D5Y1 Gm38119-201ENSMUST00000192027 755 ntAPPRIS P1 TSL 5 BASIC19.37■□□□□ 0.69
Ccdc39Q9D5Y1 D030044L04Rik-201ENSMUST00000204220 1291 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
Ccdc39Q9D5Y1 Ppib-201ENSMUST00000034947 892 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Ccdc39Q9D5Y1 Dok7-202ENSMUST00000101298 2443 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
Ccdc39Q9D5Y1 Krt6a-201ENSMUST00000023788 2256 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Ccdc39Q9D5Y1 Sorcs3-201ENSMUST00000078880 5634 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Ccdc39Q9D5Y1 Mief1-203ENSMUST00000228788 5352 ntAPPRIS P1 BASIC19.37■□□□□ 0.69
Ccdc39Q9D5Y1 Tbxas1-201ENSMUST00000003017 1990 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Ccdc39Q9D5Y1 Nosip-201ENSMUST00000003513 1814 ntAPPRIS P3 TSL 1 (best) BASIC19.37■□□□□ 0.69
Ccdc39Q9D5Y1 Gck-202ENSMUST00000109822 1786 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
Ccdc39Q9D5Y1 Ephb4-203ENSMUST00000111055 4296 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
Ccdc39Q9D5Y1 Bean1-204ENSMUST00000171018 3386 ntAPPRIS P4 TSL 1 (best) BASIC19.36■□□□□ 0.69
Ccdc39Q9D5Y1 Unc13b-203ENSMUST00000107953 5034 ntAPPRIS ALT2 TSL 5 BASIC19.36■□□□□ 0.69
Ccdc39Q9D5Y1 Coro1a-201ENSMUST00000032949 1660 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Ccdc39Q9D5Y1 Dnlz-201ENSMUST00000028295 2916 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Ccdc39Q9D5Y1 Zfand5-201ENSMUST00000025659 2834 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Retrieved 100 of 76,532 protein–RNA pairs in 28.3 ms