Protein–RNA interactions for Protein: Q9D1C8

Vps28, Vacuolar protein sorting-associated protein 28 homolog, mousemouse

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps28Q9D1C8 Ddn-201ENSMUST00000075444 3740 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Vps28Q9D1C8 Qprt-201ENSMUST00000032912 2050 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Vps28Q9D1C8 Pdgfa-203ENSMUST00000110896 1363 ntAPPRIS P1 TSL 5 BASIC16.81■□□□□ 0.28
Vps28Q9D1C8 Gm14029-201ENSMUST00000151051 1348 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
Vps28Q9D1C8 Rerg-204ENSMUST00000149100 635 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
Vps28Q9D1C8 F420014N23Rik-202ENSMUST00000219079 659 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
Vps28Q9D1C8 Insl6-201ENSMUST00000052380 708 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Vps28Q9D1C8 Rpl36al-201ENSMUST00000054544 526 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Vps28Q9D1C8 Gm27029-201ENSMUST00000107257 1898 ntAPPRIS ALT2 TSL 5 BASIC16.81■□□□□ 0.28
Vps28Q9D1C8 Pcmt1-202ENSMUST00000159917 2491 ntAPPRIS P3 TSL 1 (best) BASIC16.81■□□□□ 0.28
Vps28Q9D1C8 Bmp2k-201ENSMUST00000035635 7387 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Vps28Q9D1C8 Timm44-201ENSMUST00000003029 1790 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Vps28Q9D1C8 Fgfr1-214ENSMUST00000178276 4741 ntTSL 5 BASIC16.81■□□□□ 0.28
Vps28Q9D1C8 Cacna1h-202ENSMUST00000159048 8174 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
Vps28Q9D1C8 Cacna1c-216ENSMUST00000188522 7338 ntAPPRIS ALT2 TSL 5 BASIC16.81■□□□□ 0.28
Vps28Q9D1C8 Sytl3-201ENSMUST00000097430 2100 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Vps28Q9D1C8 Atg4c-201ENSMUST00000030279 3178 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Vps28Q9D1C8 Rb1-201ENSMUST00000022701 4656 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
Vps28Q9D1C8 Sec14l1-203ENSMUST00000103026 2589 ntAPPRIS ALT2 TSL 5 BASIC16.81■□□□□ 0.28
Vps28Q9D1C8 Afg1l-201ENSMUST00000041024 2513 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Vps28Q9D1C8 Brd3os-202ENSMUST00000209765 1898 ntAPPRIS P1 BASIC16.8■□□□□ 0.28
Vps28Q9D1C8 Eefsec-201ENSMUST00000165242 2679 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Vps28Q9D1C8 Aqp1-201ENSMUST00000004774 2627 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Vps28Q9D1C8 Srpx-202ENSMUST00000115543 1218 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
Vps28Q9D1C8 4930401G09Rik-201ENSMUST00000139500 637 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
Vps28Q9D1C8 Lmbrd1-202ENSMUST00000186096 688 ntTSL 2 BASIC16.8■□□□□ 0.28
Vps28Q9D1C8 Chka-202ENSMUST00000072055 2549 ntAPPRIS P3 TSL 1 (best) BASIC16.8■□□□□ 0.28
Vps28Q9D1C8 Evx1-201ENSMUST00000031787 2877 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Vps28Q9D1C8 Gm16835-201ENSMUST00000140488 2809 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
Vps28Q9D1C8 Slc29a1-202ENSMUST00000064889 1988 ntAPPRIS P3 TSL 1 (best) BASIC16.8■□□□□ 0.28
Vps28Q9D1C8 Rsph6a-202ENSMUST00000076887 1580 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
Vps28Q9D1C8 Bcar1-201ENSMUST00000166232 3142 ntAPPRIS P3 TSL 1 (best) BASIC16.8■□□□□ 0.28
Vps28Q9D1C8 Ptpro-203ENSMUST00000167679 5096 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
Vps28Q9D1C8 Antxr2-202ENSMUST00000199088 2739 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
Vps28Q9D1C8 Matn4-201ENSMUST00000103103 2304 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
Vps28Q9D1C8 Plpp6-201ENSMUST00000045674 2859 ntAPPRIS P1 BASIC16.79■□□□□ 0.28
Vps28Q9D1C8 Relt-201ENSMUST00000008462 2851 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Vps28Q9D1C8 Crhr2-203ENSMUST00000114374 1440 ntAPPRIS ALT1 TSL 5 BASIC16.79■□□□□ 0.28
Vps28Q9D1C8 Proca1-203ENSMUST00000108317 1359 ntAPPRIS ALT2 TSL 5 BASIC16.79■□□□□ 0.28
Vps28Q9D1C8 Gm11841-201ENSMUST00000117060 1963 ntBASIC16.79■□□□□ 0.28
Vps28Q9D1C8 Camsap2-203ENSMUST00000192314 4916 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
Vps28Q9D1C8 Gm10435-202ENSMUST00000162526 2878 ntTSL 5 BASIC16.79■□□□□ 0.28
Vps28Q9D1C8 Gm15890-201ENSMUST00000161024 770 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
Vps28Q9D1C8 Arl5b-206ENSMUST00000193836 481 ntTSL 2 BASIC16.79■□□□□ 0.28
Vps28Q9D1C8 Snhg10-202ENSMUST00000222812 527 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
Vps28Q9D1C8 Srrd-201ENSMUST00000031289 1110 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Vps28Q9D1C8 S100a16-202ENSMUST00000098911 1127 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Vps28Q9D1C8 Ogfod2-201ENSMUST00000024470 1596 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Vps28Q9D1C8 Cdv3-207ENSMUST00000190226 3107 ntTSL 5 BASIC16.79■□□□□ 0.28
Vps28Q9D1C8 Rnf128-201ENSMUST00000113026 2750 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Vps28Q9D1C8 Zfp318-201ENSMUST00000113481 7850 ntAPPRIS P4 TSL 5 BASIC16.79■□□□□ 0.28
Vps28Q9D1C8 Gpr137b-201ENSMUST00000021738 2971 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Vps28Q9D1C8 Adnp2-201ENSMUST00000066743 5012 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Vps28Q9D1C8 4932702P03Rik-201ENSMUST00000138447 1482 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
Vps28Q9D1C8 Otud5-202ENSMUST00000115665 3821 ntTSL 5 BASIC16.79■□□□□ 0.28
Vps28Q9D1C8 Gbx1-201ENSMUST00000088311 3475 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Vps28Q9D1C8 Ppfibp1-201ENSMUST00000016631 4851 ntAPPRIS P3 TSL 1 (best) BASIC16.79■□□□□ 0.28
Vps28Q9D1C8 Calb2-201ENSMUST00000003754 1431 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Vps28Q9D1C8 Bnipl-201ENSMUST00000098871 1414 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
Vps28Q9D1C8 Ormdl3-201ENSMUST00000052919 2184 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Vps28Q9D1C8 Stk39-201ENSMUST00000102715 3536 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Vps28Q9D1C8 Ocel1-201ENSMUST00000002469 1611 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Vps28Q9D1C8 Npm1-201ENSMUST00000075641 1633 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Vps28Q9D1C8 Fam3a-206ENSMUST00000114143 1899 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Vps28Q9D1C8 Rad23a-202ENSMUST00000109761 1842 ntAPPRIS ALT1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Vps28Q9D1C8 Apaf1-202ENSMUST00000159110 6433 ntAPPRIS P3 TSL 1 (best) BASIC16.78■□□□□ 0.28
Vps28Q9D1C8 Mocs1-202ENSMUST00000165390 729 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
Vps28Q9D1C8 Gm27742-201ENSMUST00000184667 60 ntBASIC16.78■□□□□ 0.28
Vps28Q9D1C8 Ank2-226ENSMUST00000189368 339 ntBASIC16.78■□□□□ 0.28
Vps28Q9D1C8 Ighv6-1-201ENSMUST00000193612 343 ntBASIC16.78■□□□□ 0.28
Vps28Q9D1C8 Ube2t-201ENSMUST00000027687 1116 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Vps28Q9D1C8 Prm2-201ENSMUST00000037996 621 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Vps28Q9D1C8 Alkbh2-201ENSMUST00000053657 1073 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Vps28Q9D1C8 Abcb10-201ENSMUST00000075578 4306 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Vps28Q9D1C8 Zkscan4-202ENSMUST00000225845 1506 ntBASIC16.78■□□□□ 0.28
Vps28Q9D1C8 Rassf1-204ENSMUST00000122225 1783 ntTSL 5 BASIC16.78■□□□□ 0.28
Vps28Q9D1C8 Taf6l-213ENSMUST00000189739 1794 ntTSL 5 BASIC16.78■□□□□ 0.28
Vps28Q9D1C8 Rassf1-202ENSMUST00000093786 1787 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Vps28Q9D1C8 Kctd9-205ENSMUST00000152243 2528 ntTSL 2 BASIC16.78■□□□□ 0.28
Vps28Q9D1C8 Kbtbd11-201ENSMUST00000069399 6973 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Vps28Q9D1C8 Gm13285-201ENSMUST00000179725 1462 ntAPPRIS P1 BASIC16.78■□□□□ 0.28
Vps28Q9D1C8 Ccnl1-201ENSMUST00000029416 2169 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
Vps28Q9D1C8 Fhl3-201ENSMUST00000038684 1664 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
Vps28Q9D1C8 Gm20628-201ENSMUST00000177363 3215 ntBASIC16.77■□□□□ 0.28
Vps28Q9D1C8 Dtx2-203ENSMUST00000111144 2545 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.28
Vps28Q9D1C8 Ppt2-205ENSMUST00000169067 1392 ntAPPRIS P1 TSL 5 BASIC16.77■□□□□ 0.28
Vps28Q9D1C8 Homez-202ENSMUST00000142283 4713 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
Vps28Q9D1C8 Layn-201ENSMUST00000098782 1786 ntAPPRIS P2 TSL 5 BASIC16.77■□□□□ 0.28
Vps28Q9D1C8 Polr3e-203ENSMUST00000207481 2545 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.28
Vps28Q9D1C8 Pacs2-202ENSMUST00000220541 3101 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.27
Vps28Q9D1C8 Zfp648-201ENSMUST00000086195 1892 ntAPPRIS P1 TSL 3 BASIC16.77■□□□□ 0.27
Vps28Q9D1C8 Cnppd1-208ENSMUST00000190679 2062 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
Vps28Q9D1C8 Apbb1-205ENSMUST00000187057 1630 ntTSL 5 BASIC16.77■□□□□ 0.27
Vps28Q9D1C8 Prr14-201ENSMUST00000033095 2402 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
Vps28Q9D1C8 Gm26568-201ENSMUST00000180496 1594 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
Vps28Q9D1C8 Ngly1-201ENSMUST00000022310 2935 ntAPPRIS P2 TSL 1 (best) BASIC16.76■□□□□ 0.27
Vps28Q9D1C8 Dancr-204ENSMUST00000132389 2347 ntBASIC16.76■□□□□ 0.27
Vps28Q9D1C8 Atoh1-201ENSMUST00000101351 2121 ntAPPRIS P1 BASIC16.76■□□□□ 0.27
Vps28Q9D1C8 Nipsnap1-201ENSMUST00000038570 1926 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Vps28Q9D1C8 Bhlhb9-201ENSMUST00000068755 2823 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Retrieved 100 of 76,532 protein–RNA pairs in 100.2 ms