Protein–RNA interactions for Protein: Q9D0R4

Ddx56, Probable ATP-dependent RNA helicase DDX56, mousemouse

Known RBP Predictions only

Length 546 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx56Q9D0R4 Cacna1a-201ENSMUST00000121390 7926 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
Ddx56Q9D0R4 Cdca7l-201ENSMUST00000021592 2957 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Ddx56Q9D0R4 Ocel1-201ENSMUST00000002469 1611 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Ddx56Q9D0R4 Capn10-201ENSMUST00000027488 2902 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Ddx56Q9D0R4 BC030336-201ENSMUST00000060175 4831 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Ddx56Q9D0R4 Chrna2-202ENSMUST00000206455 1933 ntAPPRIS P1 TSL 5 BASIC17.26■□□□□ 0.35
Ddx56Q9D0R4 Gm11355-201ENSMUST00000121120 306 ntBASIC17.26■□□□□ 0.35
Ddx56Q9D0R4 Gm13420-201ENSMUST00000129574 1091 ntAPPRIS P1 TSL 5 BASIC17.26■□□□□ 0.35
Ddx56Q9D0R4 Utp23-204ENSMUST00000161651 582 ntTSL 5 BASIC17.26■□□□□ 0.35
Ddx56Q9D0R4 Gm10231-201ENSMUST00000181584 441 ntBASIC17.26■□□□□ 0.35
Ddx56Q9D0R4 Atp5g2-202ENSMUST00000185641 731 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Ddx56Q9D0R4 Gm10175-202ENSMUST00000208752 441 ntBASIC17.26■□□□□ 0.35
Ddx56Q9D0R4 Lsm1-203ENSMUST00000211168 343 ntTSL 3 BASIC17.26■□□□□ 0.35
Ddx56Q9D0R4 Polr2f-201ENSMUST00000040077 543 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Ddx56Q9D0R4 Atp5g2-201ENSMUST00000075630 441 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Ddx56Q9D0R4 Krt6b-201ENSMUST00000023786 2226 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Ddx56Q9D0R4 Tekt1-202ENSMUST00000108502 1403 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Ddx56Q9D0R4 Fmr1-205ENSMUST00000114656 4257 ntTSL 5 BASIC17.26■□□□□ 0.35
Ddx56Q9D0R4 Slc1a6-201ENSMUST00000005490 2029 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Ddx56Q9D0R4 Pou2f2-201ENSMUST00000098679 2340 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
Ddx56Q9D0R4 Adss-201ENSMUST00000016105 2771 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Ddx56Q9D0R4 Lncpint-201ENSMUST00000115107 1676 ntTSL 5 BASIC17.26■□□□□ 0.35
Ddx56Q9D0R4 Ruvbl2-201ENSMUST00000107771 1834 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Ddx56Q9D0R4 Klhdc10-201ENSMUST00000068240 3951 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
Ddx56Q9D0R4 Cygb-201ENSMUST00000021166 2331 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Ddx56Q9D0R4 Cdc25a-201ENSMUST00000094324 3632 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Ddx56Q9D0R4 Serinc2-203ENSMUST00000122374 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
Ddx56Q9D0R4 Ikbke-204ENSMUST00000161764 2867 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
Ddx56Q9D0R4 Psip1-201ENSMUST00000030207 3251 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Ddx56Q9D0R4 Gm10013-201ENSMUST00000106074 672 ntBASIC17.25■□□□□ 0.35
Ddx56Q9D0R4 Rab3d-202ENSMUST00000119055 694 ntTSL 3 BASIC17.25■□□□□ 0.35
Ddx56Q9D0R4 Gm13025-201ENSMUST00000141469 1163 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
Ddx56Q9D0R4 Fbxo6-208ENSMUST00000168503 1240 ntAPPRIS P1 TSL 2 BASIC17.25■□□□□ 0.35
Ddx56Q9D0R4 Pyy-201ENSMUST00000017455 555 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
Ddx56Q9D0R4 Gm28402-201ENSMUST00000188574 373 ntTSL 3 BASIC17.25■□□□□ 0.35
Ddx56Q9D0R4 Nsg1-204ENSMUST00000201363 820 ntAPPRIS P1 TSL 2 BASIC17.25■□□□□ 0.35
Ddx56Q9D0R4 D030044L04Rik-201ENSMUST00000204220 1291 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
Ddx56Q9D0R4 4732471J01Rik-202ENSMUST00000205787 991 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
Ddx56Q9D0R4 Rln3-201ENSMUST00000061923 634 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Ddx56Q9D0R4 AC115863.1-201ENSMUST00000214815 1813 ntBASIC17.25■□□□□ 0.35
Ddx56Q9D0R4 Raxos1-201ENSMUST00000181100 2547 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
Ddx56Q9D0R4 Gm20628-201ENSMUST00000177363 3215 ntBASIC17.25■□□□□ 0.35
Ddx56Q9D0R4 Ppfibp1-201ENSMUST00000016631 4851 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
Ddx56Q9D0R4 Tcf24-202ENSMUST00000185184 4193 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
Ddx56Q9D0R4 Celf6-204ENSMUST00000121266 2610 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
Ddx56Q9D0R4 Nsfl1c-201ENSMUST00000028949 1364 ntAPPRIS ALT1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Ddx56Q9D0R4 Irak1-201ENSMUST00000033769 2890 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
Ddx56Q9D0R4 Fscn1-207ENSMUST00000198017 2157 ntTSL 5 BASIC17.25■□□□□ 0.35
Ddx56Q9D0R4 Tbp-201ENSMUST00000014911 1891 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Ddx56Q9D0R4 Syngap1-204ENSMUST00000194598 6011 ntAPPRIS P2 TSL 5 BASIC17.24■□□□□ 0.35
Ddx56Q9D0R4 Col18a1-202ENSMUST00000081654 5063 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
Ddx56Q9D0R4 Pdk3-201ENSMUST00000045748 2115 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Ddx56Q9D0R4 Mal-202ENSMUST00000028854 2778 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Ddx56Q9D0R4 Guf1-202ENSMUST00000087228 3433 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Ddx56Q9D0R4 Arnt-204ENSMUST00000107160 783 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
Ddx56Q9D0R4 4930515G01Rik-201ENSMUST00000173208 1247 ntBASIC17.24■□□□□ 0.35
Ddx56Q9D0R4 Atp23-201ENSMUST00000026504 903 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
Ddx56Q9D0R4 Nudt1-201ENSMUST00000050205 954 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Ddx56Q9D0R4 Nudt1-202ENSMUST00000071881 952 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Ddx56Q9D0R4 Myo9b-206ENSMUST00000212935 6316 ntAPPRIS ALT2 TSL 5 BASIC17.24■□□□□ 0.35
Ddx56Q9D0R4 Sphk1-206ENSMUST00000106388 1891 ntAPPRIS ALT2 TSL 5 BASIC17.24■□□□□ 0.35
Ddx56Q9D0R4 Gm5421-201ENSMUST00000181698 2354 ntBASIC17.24■□□□□ 0.35
Ddx56Q9D0R4 Gbx1-201ENSMUST00000088311 3475 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Ddx56Q9D0R4 Zswim1-201ENSMUST00000017908 2705 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Ddx56Q9D0R4 Mff-211ENSMUST00000161648 1715 ntTSL 5 BASIC17.24■□□□□ 0.35
Ddx56Q9D0R4 Slc11a1-201ENSMUST00000027368 2315 ntAPPRIS P2 TSL 1 (best) BASIC17.24■□□□□ 0.35
Ddx56Q9D0R4 Map2k5-201ENSMUST00000034920 2310 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Ddx56Q9D0R4 AC154231.1-201ENSMUST00000220564 2175 ntBASIC17.23■□□□□ 0.35
Ddx56Q9D0R4 Snx8-204ENSMUST00000196130 2547 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
Ddx56Q9D0R4 Camk2n1-201ENSMUST00000050918 4444 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Ddx56Q9D0R4 Wdtc1-201ENSMUST00000043305 4191 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Ddx56Q9D0R4 Trim54-201ENSMUST00000013771 1434 ntAPPRIS P2 TSL 1 (best) BASIC17.23■□□□□ 0.35
Ddx56Q9D0R4 Xpo4-209ENSMUST00000174545 8680 ntAPPRIS P2 TSL 1 (best) BASIC17.23■□□□□ 0.35
Ddx56Q9D0R4 Tmem214-201ENSMUST00000114716 2220 ntAPPRIS ALT2 TSL 5 BASIC17.23■□□□□ 0.35
Ddx56Q9D0R4 Fbxl21-203ENSMUST00000121871 1963 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
Ddx56Q9D0R4 Rgp1-203ENSMUST00000117140 1635 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
Ddx56Q9D0R4 Dcxr-202ENSMUST00000106148 830 ntTSL 2 BASIC17.23■□□□□ 0.35
Ddx56Q9D0R4 Gm13524-201ENSMUST00000125869 662 ntTSL 3 BASIC17.23■□□□□ 0.35
Ddx56Q9D0R4 Gm26827-201ENSMUST00000181911 148 ntTSL 5 BASIC17.23■□□□□ 0.35
Ddx56Q9D0R4 Grtp1-204ENSMUST00000209691 1030 ntTSL 5 BASIC17.23■□□□□ 0.35
Ddx56Q9D0R4 Ankrd40-201ENSMUST00000021227 1215 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
Ddx56Q9D0R4 Coq7-201ENSMUST00000032887 914 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Ddx56Q9D0R4 Cltb-201ENSMUST00000049575 1004 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
Ddx56Q9D0R4 Abcc5-203ENSMUST00000096199 1136 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
Ddx56Q9D0R4 Ifnar1-202ENSMUST00000117748 2771 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Ddx56Q9D0R4 Otub1-202ENSMUST00000123594 1728 ntTSL 5 BASIC17.23■□□□□ 0.35
Ddx56Q9D0R4 Ppp2r5e-201ENSMUST00000021447 4810 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Ddx56Q9D0R4 Trim7-201ENSMUST00000046903 2161 ntAPPRIS P1 TSL 5 BASIC17.23■□□□□ 0.35
Ddx56Q9D0R4 Bnip2-203ENSMUST00000117450 1465 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
Ddx56Q9D0R4 Abhd5-204ENSMUST00000156520 3157 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Ddx56Q9D0R4 Susd1-201ENSMUST00000040166 3295 ntAPPRIS P2 TSL 1 (best) BASIC17.23■□□□□ 0.35
Ddx56Q9D0R4 Stambp-206ENSMUST00000206400 2144 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Ddx56Q9D0R4 Gm45277-201ENSMUST00000210549 1695 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
Ddx56Q9D0R4 Dvl2-201ENSMUST00000019362 2968 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Ddx56Q9D0R4 Crhr2-203ENSMUST00000114374 1440 ntAPPRIS ALT1 TSL 5 BASIC17.22■□□□□ 0.35
Ddx56Q9D0R4 BC048679-203ENSMUST00000207871 567 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
Ddx56Q9D0R4 Rpl13a-204ENSMUST00000209711 495 ntTSL 3 BASIC17.22■□□□□ 0.35
Ddx56Q9D0R4 Nudt21-204ENSMUST00000212981 1184 ntTSL 3 BASIC17.22■□□□□ 0.35
Ddx56Q9D0R4 Spsb2-202ENSMUST00000052727 1219 ntAPPRIS P1 TSL 3 BASIC17.22■□□□□ 0.35
Ddx56Q9D0R4 C530025M09Rik-201ENSMUST00000099264 690 ntAPPRIS P1 BASIC17.22■□□□□ 0.35
Retrieved 100 of 76,532 protein–RNA pairs in 32.8 ms