Protein–RNA interactions for Protein: Q6IFX3

Krt40, Keratin, type I cytoskeletal 40, mousemouse

Predictions only

Length 439 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Krt40Q6IFX3 Ch25h-201ENSMUST00000050562 1350 ntAPPRIS P1 BASIC19.27■□□□□ 0.68
Krt40Q6IFX3 Npcd-202ENSMUST00000089299 1453 ntAPPRIS P4 TSL 1 (best) BASIC19.27■□□□□ 0.67
Krt40Q6IFX3 Rhof-201ENSMUST00000031401 2208 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
Krt40Q6IFX3 Mir22hg-202ENSMUST00000149940 1752 ntTSL 1 (best) BASIC19.27■□□□□ 0.67
Krt40Q6IFX3 Fam109a-203ENSMUST00000198271 2335 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Krt40Q6IFX3 Gm26663-201ENSMUST00000181105 1882 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
Krt40Q6IFX3 Layn-204ENSMUST00000217212 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
Krt40Q6IFX3 Mink1-201ENSMUST00000072237 4994 ntAPPRIS ALT2 TSL 5 BASIC19.26■□□□□ 0.67
Krt40Q6IFX3 Sprtn-201ENSMUST00000034467 4464 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Krt40Q6IFX3 9130019P16Rik-201ENSMUST00000135612 1019 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
Krt40Q6IFX3 Dgcr6-208ENSMUST00000153123 920 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
Krt40Q6IFX3 Gm44357-201ENSMUST00000195897 142 ntBASIC19.26■□□□□ 0.67
Krt40Q6IFX3 Gm19658-201ENSMUST00000196231 138 ntBASIC19.26■□□□□ 0.67
Krt40Q6IFX3 Gm44367-201ENSMUST00000196836 138 ntBASIC19.26■□□□□ 0.67
Krt40Q6IFX3 Gm44350-201ENSMUST00000197197 138 ntBASIC19.26■□□□□ 0.67
Krt40Q6IFX3 Gm44390-201ENSMUST00000197533 144 ntBASIC19.26■□□□□ 0.67
Krt40Q6IFX3 Gm44313-201ENSMUST00000198018 138 ntBASIC19.26■□□□□ 0.67
Krt40Q6IFX3 Gm44486-201ENSMUST00000198508 138 ntBASIC19.26■□□□□ 0.67
Krt40Q6IFX3 Gm44314-201ENSMUST00000199263 138 ntBASIC19.26■□□□□ 0.67
Krt40Q6IFX3 Gm44394-201ENSMUST00000199558 138 ntBASIC19.26■□□□□ 0.67
Krt40Q6IFX3 Gm44484-201ENSMUST00000199873 138 ntBASIC19.26■□□□□ 0.67
Krt40Q6IFX3 Gm44466-201ENSMUST00000200264 138 ntBASIC19.26■□□□□ 0.67
Krt40Q6IFX3 Gm44359-201ENSMUST00000200671 138 ntBASIC19.26■□□□□ 0.67
Krt40Q6IFX3 Methig1-201ENSMUST00000075675 1029 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Krt40Q6IFX3 Dusp9-201ENSMUST00000019701 2722 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Krt40Q6IFX3 Cbarp-201ENSMUST00000105369 3121 ntAPPRIS P2 TSL 5 BASIC19.26■□□□□ 0.67
Krt40Q6IFX3 Rab7-203ENSMUST00000113597 1859 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Krt40Q6IFX3 Ccnl1-201ENSMUST00000029416 2169 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Krt40Q6IFX3 Taf6l-205ENSMUST00000176496 2224 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
Krt40Q6IFX3 Unc13a-208ENSMUST00000177517 5654 ntAPPRIS ALT2 TSL 5 BASIC19.25■□□□□ 0.67
Krt40Q6IFX3 Asap2-204ENSMUST00000101562 5552 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
Krt40Q6IFX3 Syt3-202ENSMUST00000118962 2494 ntAPPRIS P1 TSL 5 BASIC19.25■□□□□ 0.67
Krt40Q6IFX3 Dbnl-202ENSMUST00000102928 2295 ntAPPRIS P3 TSL 1 (best) BASIC19.25■□□□□ 0.67
Krt40Q6IFX3 Fbxl21-201ENSMUST00000045428 1965 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Krt40Q6IFX3 Gm13216-201ENSMUST00000117145 591 ntBASIC19.25■□□□□ 0.67
Krt40Q6IFX3 Cabp2-205ENSMUST00000162908 911 ntAPPRIS P3 TSL 1 (best) BASIC19.25■□□□□ 0.67
Krt40Q6IFX3 Sclt1-201ENSMUST00000026866 3005 ntAPPRIS P1 TSL 5 BASIC19.25■□□□□ 0.67
Krt40Q6IFX3 Hand1-201ENSMUST00000036917 1904 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Krt40Q6IFX3 Homer2-206ENSMUST00000207983 1634 ntAPPRIS P3 TSL 1 (best) BASIC19.25■□□□□ 0.67
Krt40Q6IFX3 Iqck-201ENSMUST00000098087 1503 ntAPPRIS ALT2 TSL 5 BASIC19.25■□□□□ 0.67
Krt40Q6IFX3 Ccdc6-203ENSMUST00000147545 5511 ntAPPRIS P1 TSL 5 BASIC19.25■□□□□ 0.67
Krt40Q6IFX3 Rbm3-206ENSMUST00000115621 1338 ntAPPRIS ALT1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Krt40Q6IFX3 Lrrc25-201ENSMUST00000052437 1313 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Krt40Q6IFX3 Serinc2-203ENSMUST00000122374 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
Krt40Q6IFX3 Lonp1-201ENSMUST00000047226 2963 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Krt40Q6IFX3 Zbtb46-202ENSMUST00000087409 2577 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
Krt40Q6IFX3 Cdv3-207ENSMUST00000190226 3107 ntTSL 5 BASIC19.24■□□□□ 0.67
Krt40Q6IFX3 Mir124-2hg-202ENSMUST00000186746 1368 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
Krt40Q6IFX3 Nsmf-201ENSMUST00000006646 2922 ntAPPRIS P3 TSL 1 (best) BASIC19.24■□□□□ 0.67
Krt40Q6IFX3 Gm17509-201ENSMUST00000165680 2375 ntAPPRIS P1 BASIC19.24■□□□□ 0.67
Krt40Q6IFX3 Gm7616-201ENSMUST00000143112 624 ntTSL 3 BASIC19.24■□□□□ 0.67
Krt40Q6IFX3 Rhox13-201ENSMUST00000152730 876 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Krt40Q6IFX3 Tnnt2-205ENSMUST00000178204 1172 ntAPPRIS ALT2 TSL 5 BASIC19.24■□□□□ 0.67
Krt40Q6IFX3 Tnnt2-207ENSMUST00000179863 1097 ntAPPRIS P4 TSL 5 BASIC19.24■□□□□ 0.67
Krt40Q6IFX3 Tnnt2-209ENSMUST00000188028 1200 ntAPPRIS P4 TSL 5 BASIC19.24■□□□□ 0.67
Krt40Q6IFX3 Zfp747-202ENSMUST00000205832 618 ntTSL 3 BASIC19.24■□□□□ 0.67
Krt40Q6IFX3 Gm7506-201ENSMUST00000207758 815 ntBASIC19.24■□□□□ 0.67
Krt40Q6IFX3 3830406C13Rik-207ENSMUST00000223927 1010 ntBASIC19.24■□□□□ 0.67
Krt40Q6IFX3 Apof-201ENSMUST00000050901 1258 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Krt40Q6IFX3 Pigz-201ENSMUST00000052174 2184 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Krt40Q6IFX3 Nrl-202ENSMUST00000111404 2422 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Krt40Q6IFX3 Rab37-202ENSMUST00000067754 2577 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
Krt40Q6IFX3 Stxbp3-205ENSMUST00000138552 1789 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
Krt40Q6IFX3 Ube2k-201ENSMUST00000142407 4893 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
Krt40Q6IFX3 Sctr-201ENSMUST00000072886 2012 ntAPPRIS P3 TSL 2 BASIC19.24■□□□□ 0.67
Krt40Q6IFX3 Ginm1-201ENSMUST00000039763 1557 ntAPPRIS P3 TSL 1 (best) BASIC19.23■□□□□ 0.67
Krt40Q6IFX3 Kifc3-203ENSMUST00000169748 3384 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
Krt40Q6IFX3 Zfp326-201ENSMUST00000031227 2667 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Krt40Q6IFX3 Abcd4-201ENSMUST00000021666 2309 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Krt40Q6IFX3 Gnas-222ENSMUST00000180362 1645 ntTSL 5 BASIC19.23■□□□□ 0.67
Krt40Q6IFX3 Pitx1-201ENSMUST00000021968 2451 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Krt40Q6IFX3 Park7-203ENSMUST00000105674 937 ntAPPRIS P1 TSL 5 BASIC19.23■□□□□ 0.67
Krt40Q6IFX3 Mir6404-201ENSMUST00000183699 94 ntBASIC19.23■□□□□ 0.67
Krt40Q6IFX3 Rpl19-ps10-201ENSMUST00000205555 330 ntBASIC19.23■□□□□ 0.67
Krt40Q6IFX3 Sft2d2-201ENSMUST00000043338 5535 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Krt40Q6IFX3 Kank3-201ENSMUST00000048560 2641 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Krt40Q6IFX3 Tmem267-205ENSMUST00000223912 1789 ntAPPRIS P1 BASIC19.23■□□□□ 0.67
Krt40Q6IFX3 Rnpep-202ENSMUST00000077340 2288 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Krt40Q6IFX3 Dlg1-202ENSMUST00000064477 4663 ntAPPRIS P3 TSL 1 (best) BASIC19.23■□□□□ 0.67
Krt40Q6IFX3 Abhd13-201ENSMUST00000048216 5074 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Krt40Q6IFX3 Cope-201ENSMUST00000066469 1300 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Krt40Q6IFX3 Zbtb48-201ENSMUST00000066715 2218 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Krt40Q6IFX3 Mxi1-201ENSMUST00000003870 5156 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
Krt40Q6IFX3 Zswim8-208ENSMUST00000224751 5951 ntAPPRIS ALT2 BASIC19.22■□□□□ 0.67
Krt40Q6IFX3 Adrb2-201ENSMUST00000053640 2143 ntAPPRIS P1 BASIC19.22■□□□□ 0.67
Krt40Q6IFX3 Chga-201ENSMUST00000021610 1883 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Krt40Q6IFX3 Gm26718-201ENSMUST00000181048 1378 ntTSL 5 BASIC19.22■□□□□ 0.67
Krt40Q6IFX3 Rhoc-202ENSMUST00000106787 959 ntAPPRIS P1 TSL 2 BASIC19.22■□□□□ 0.67
Krt40Q6IFX3 Nabp2-204ENSMUST00000166608 979 ntTSL 5 BASIC19.22■□□□□ 0.67
Krt40Q6IFX3 Gm44771-201ENSMUST00000206975 626 ntBASIC19.22■□□□□ 0.67
Krt40Q6IFX3 Vti1a-206ENSMUST00000225529 1244 ntBASIC19.22■□□□□ 0.67
Krt40Q6IFX3 Rbfox2-207ENSMUST00000227533 1041 ntBASIC19.22■□□□□ 0.67
Krt40Q6IFX3 Tubb4b-201ENSMUST00000043584 1598 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Krt40Q6IFX3 Nsmf-203ENSMUST00000100334 2957 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
Krt40Q6IFX3 Csk-201ENSMUST00000034863 2749 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Krt40Q6IFX3 Cspp1-203ENSMUST00000118263 2162 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
Krt40Q6IFX3 Fam46c-201ENSMUST00000061455 5640 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Krt40Q6IFX3 Tm9sf1-205ENSMUST00000122358 2517 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Krt40Q6IFX3 Matk-202ENSMUST00000117488 1980 ntAPPRIS P3 TSL 1 (best) BASIC19.21■□□□□ 0.67
Krt40Q6IFX3 Dok4-201ENSMUST00000046461 2590 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Retrieved 100 of 76,532 protein–RNA pairs in 27 ms