Protein–RNA interactions for Protein: Q5SNZ0

Ccdc88a, Girdin, mousemouse

Predictions only

Length 1,873 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc88aQ5SNZ0 Nudt3-209ENSMUST00000176876 465 ntTSL 2 BASIC18.8■□□□□ 0.6
Ccdc88aQ5SNZ0 Nudt3-202ENSMUST00000062397 558 ntTSL 3 BASIC18.8■□□□□ 0.6
Ccdc88aQ5SNZ0 Comp-201ENSMUST00000003659 2416 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Ccdc88aQ5SNZ0 Tesk1-201ENSMUST00000060864 3947 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Ccdc88aQ5SNZ0 BC051019-202ENSMUST00000106735 1957 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Ccdc88aQ5SNZ0 Rala-201ENSMUST00000009003 2688 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Ccdc88aQ5SNZ0 Rnpep-202ENSMUST00000077340 2288 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Ccdc88aQ5SNZ0 Slc9a6-201ENSMUST00000077741 4976 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Ccdc88aQ5SNZ0 Krt83-201ENSMUST00000023718 1756 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Ccdc88aQ5SNZ0 Lgr4-201ENSMUST00000046548 5060 ntAPPRIS P1 TSL 2 BASIC18.79■□□□□ 0.6
Ccdc88aQ5SNZ0 Ube2j2-203ENSMUST00000105581 1391 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Ccdc88aQ5SNZ0 Ubr5-201ENSMUST00000110336 9242 ntTSL 5 BASIC18.79■□□□□ 0.6
Ccdc88aQ5SNZ0 Cdc23-201ENSMUST00000025228 2084 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
Ccdc88aQ5SNZ0 Ccdc106-201ENSMUST00000045543 1534 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Ccdc88aQ5SNZ0 Cobll1-202ENSMUST00000102726 5031 ntAPPRIS P3 TSL 1 (best) BASIC18.79■□□□□ 0.6
Ccdc88aQ5SNZ0 Cobll1-203ENSMUST00000112429 5045 ntAPPRIS ALT2 TSL 5 BASIC18.79■□□□□ 0.6
Ccdc88aQ5SNZ0 2810013P06Rik-201ENSMUST00000186531 2137 ntBASIC18.79■□□□□ 0.6
Ccdc88aQ5SNZ0 4931406C07Rik-209ENSMUST00000217042 691 ntTSL 3 BASIC18.79■□□□□ 0.6
Ccdc88aQ5SNZ0 Cspp1-203ENSMUST00000118263 2162 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
Ccdc88aQ5SNZ0 Stxbp3-205ENSMUST00000138552 1789 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
Ccdc88aQ5SNZ0 Hand1-201ENSMUST00000036917 1904 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Ccdc88aQ5SNZ0 Cyp21a1-201ENSMUST00000025223 2058 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Ccdc88aQ5SNZ0 Gm45774-201ENSMUST00000211992 2665 ntBASIC18.79■□□□□ 0.6
Ccdc88aQ5SNZ0 Kcnq2-205ENSMUST00000103048 2827 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
Ccdc88aQ5SNZ0 Nelfb-201ENSMUST00000059849 2637 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Ccdc88aQ5SNZ0 Il3ra-203ENSMUST00000224163 2315 ntAPPRIS P2 BASIC18.78■□□□□ 0.6
Ccdc88aQ5SNZ0 Uba52-203ENSMUST00000125184 711 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Ccdc88aQ5SNZ0 Gm26768-201ENSMUST00000181097 966 ntTSL 5 BASIC18.78■□□□□ 0.6
Ccdc88aQ5SNZ0 Gm10175-201ENSMUST00000086013 645 ntBASIC18.78■□□□□ 0.6
Ccdc88aQ5SNZ0 Astn2-202ENSMUST00000084496 4675 ntAPPRIS ALT2 TSL 5 BASIC18.78■□□□□ 0.6
Ccdc88aQ5SNZ0 Taz-202ENSMUST00000114180 1786 ntAPPRIS ALT1 TSL 5 BASIC18.78■□□□□ 0.6
Ccdc88aQ5SNZ0 Mir22hg-202ENSMUST00000149940 1752 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
Ccdc88aQ5SNZ0 Ubb-201ENSMUST00000019649 1499 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Ccdc88aQ5SNZ0 Rbm12b2-202ENSMUST00000095143 3147 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Ccdc88aQ5SNZ0 Tbxas1-201ENSMUST00000003017 1990 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Ccdc88aQ5SNZ0 Serpine2-201ENSMUST00000027467 2210 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Ccdc88aQ5SNZ0 Rhof-201ENSMUST00000031401 2208 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Ccdc88aQ5SNZ0 Hist1h1c-201ENSMUST00000040914 1560 ntAPPRIS P1 BASIC18.78■□□□□ 0.6
Ccdc88aQ5SNZ0 Il11ra1-204ENSMUST00000108042 1768 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Ccdc88aQ5SNZ0 Snx11-202ENSMUST00000107661 2197 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Ccdc88aQ5SNZ0 Ccl27a-202ENSMUST00000108032 350 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
Ccdc88aQ5SNZ0 Gm44264-201ENSMUST00000203049 742 ntTSL 3 BASIC18.77■□□□□ 0.6
Ccdc88aQ5SNZ0 Abhd18-206ENSMUST00000203650 797 ntTSL 5 BASIC18.77■□□□□ 0.6
Ccdc88aQ5SNZ0 AC160338.1-201ENSMUST00000214232 705 ntBASIC18.77■□□□□ 0.6
Ccdc88aQ5SNZ0 1600017P15Rik-201ENSMUST00000083427 412 ntBASIC18.77■□□□□ 0.6
Ccdc88aQ5SNZ0 Il11ra1-202ENSMUST00000108040 1837 ntAPPRIS P1 TSL 5 BASIC18.77■□□□□ 0.6
Ccdc88aQ5SNZ0 Atg5-201ENSMUST00000039286 2352 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Ccdc88aQ5SNZ0 Nfe2-208ENSMUST00000149111 1878 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Ccdc88aQ5SNZ0 Dbnl-202ENSMUST00000102928 2295 ntAPPRIS P3 TSL 1 (best) BASIC18.77■□□□□ 0.6
Ccdc88aQ5SNZ0 Ercc6l2-202ENSMUST00000021926 1592 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
Ccdc88aQ5SNZ0 Xpr1-202ENSMUST00000111774 2753 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
Ccdc88aQ5SNZ0 Dlx3-201ENSMUST00000092768 2607 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Ccdc88aQ5SNZ0 Haghl-201ENSMUST00000077938 1405 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Ccdc88aQ5SNZ0 Cd82-205ENSMUST00000116457 1683 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Ccdc88aQ5SNZ0 G3bp2-204ENSMUST00000169094 2716 ntAPPRIS P3 TSL 1 (best) BASIC18.77■□□□□ 0.6
Ccdc88aQ5SNZ0 Zfp668-203ENSMUST00000106262 3169 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Ccdc88aQ5SNZ0 Gm29246-201ENSMUST00000189221 349 ntTSL 3 BASIC18.77■□□□□ 0.6
Ccdc88aQ5SNZ0 Pdcd6-201ENSMUST00000022060 1131 ntAPPRIS P2 TSL 1 (best) BASIC18.77■□□□□ 0.6
Ccdc88aQ5SNZ0 Rpl27-201ENSMUST00000077856 614 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Ccdc88aQ5SNZ0 Fhl1-203ENSMUST00000114769 2770 ntTSL 1 (best) BASIC18.77■□□□□ 0.59
Ccdc88aQ5SNZ0 Prmt9-202ENSMUST00000118622 2768 ntAPPRIS ALT2 TSL 5 BASIC18.77■□□□□ 0.59
Ccdc88aQ5SNZ0 Matr3-214ENSMUST00000190029 2845 ntAPPRIS P1 TSL 5 BASIC18.77■□□□□ 0.59
Ccdc88aQ5SNZ0 Shox2-202ENSMUST00000162060 1537 ntTSL 3 BASIC18.77■□□□□ 0.59
Ccdc88aQ5SNZ0 Fbxl21-201ENSMUST00000045428 1965 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
Ccdc88aQ5SNZ0 Dirc2-201ENSMUST00000023554 5395 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
Ccdc88aQ5SNZ0 Zdhhc1-203ENSMUST00000212303 2056 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Ccdc88aQ5SNZ0 Dok3-201ENSMUST00000047877 1546 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Ccdc88aQ5SNZ0 Izumo1r-203ENSMUST00000117620 1095 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
Ccdc88aQ5SNZ0 Sec22b-202ENSMUST00000122288 1177 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
Ccdc88aQ5SNZ0 H2-Bl-201ENSMUST00000173080 1138 ntAPPRIS P5 TSL 1 (best) BASIC18.76■□□□□ 0.59
Ccdc88aQ5SNZ0 H2-Bl-204ENSMUST00000184502 862 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
Ccdc88aQ5SNZ0 Pih1d1-206ENSMUST00000210139 1077 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Ccdc88aQ5SNZ0 Gm40849-201ENSMUST00000222330 603 ntTSL 3 BASIC18.76■□□□□ 0.59
Ccdc88aQ5SNZ0 AC114585.2-202ENSMUST00000228094 426 ntBASIC18.76■□□□□ 0.59
Ccdc88aQ5SNZ0 Lce3b-201ENSMUST00000046234 562 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Ccdc88aQ5SNZ0 Commd5-201ENSMUST00000068407 1037 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Ccdc88aQ5SNZ0 Fmr1nb-201ENSMUST00000069731 799 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
Ccdc88aQ5SNZ0 Pfkfb4-201ENSMUST00000051873 3316 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
Ccdc88aQ5SNZ0 Rflna-201ENSMUST00000036109 1681 ntAPPRIS P1 TSL 5 BASIC18.76■□□□□ 0.59
Ccdc88aQ5SNZ0 Gm13446-201ENSMUST00000124555 2033 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
Ccdc88aQ5SNZ0 Wdyhv1-204ENSMUST00000226955 1094 ntBASIC18.75■□□□□ 0.59
Ccdc88aQ5SNZ0 Slc38a10-203ENSMUST00000076697 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
Ccdc88aQ5SNZ0 Gm8189-202ENSMUST00000211035 2039 ntTSL 5 BASIC18.75■□□□□ 0.59
Ccdc88aQ5SNZ0 Mif4gd-201ENSMUST00000021087 1372 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Ccdc88aQ5SNZ0 Tmed9-201ENSMUST00000109905 1420 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Ccdc88aQ5SNZ0 Ksr1-201ENSMUST00000018478 5495 ntAPPRIS P1 TSL 5 BASIC18.75■□□□□ 0.59
Ccdc88aQ5SNZ0 4933433G15Rik-201ENSMUST00000180533 1481 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
Ccdc88aQ5SNZ0 Kptn-201ENSMUST00000006178 1630 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Ccdc88aQ5SNZ0 Kalrn-208ENSMUST00000114961 6128 ntTSL 5 BASIC18.75■□□□□ 0.59
Ccdc88aQ5SNZ0 Gm3248-201ENSMUST00000163885 2055 ntAPPRIS P1 TSL 5 BASIC18.75■□□□□ 0.59
Ccdc88aQ5SNZ0 Stk3-201ENSMUST00000018476 2914 ntAPPRIS P2 TSL 1 (best) BASIC18.75■□□□□ 0.59
Ccdc88aQ5SNZ0 9330151L19Rik-201ENSMUST00000181850 2545 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
Ccdc88aQ5SNZ0 Bola3-202ENSMUST00000120040 583 ntTSL 3 BASIC18.75■□□□□ 0.59
Ccdc88aQ5SNZ0 Dvl2-201ENSMUST00000019362 2968 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Ccdc88aQ5SNZ0 D030044L04Rik-201ENSMUST00000204220 1291 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
Ccdc88aQ5SNZ0 Gm44081-201ENSMUST00000204406 643 ntTSL 3 BASIC18.75■□□□□ 0.59
Ccdc88aQ5SNZ0 CT943659.1-201ENSMUST00000215459 326 ntBASIC18.75■□□□□ 0.59
Ccdc88aQ5SNZ0 Mrgpra9-201ENSMUST00000098436 1049 ntAPPRIS ALT2 TSL 5 BASIC18.75■□□□□ 0.59
Ccdc88aQ5SNZ0 Snupn-201ENSMUST00000068856 1391 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Ccdc88aQ5SNZ0 Mcl1-201ENSMUST00000037947 3418 ntAPPRIS P2 TSL 1 (best) BASIC18.74■□□□□ 0.59
Retrieved 100 of 76,532 protein–RNA pairs in 28.5 ms