Protein–RNA interactions for Protein: P63158

Hmgb1, High mobility group protein B1, mousemouse

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb1P63158 Tcp1-209ENSMUST00000151287 2446 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Hmgb1P63158 Zfp264-201ENSMUST00000208656 1563 ntBASIC18.04■□□□□ 0.48
Hmgb1P63158 Rgl1-202ENSMUST00000111857 3037 ntTSL 5 BASIC18.04■□□□□ 0.48
Hmgb1P63158 Rasip1-201ENSMUST00000057927 3202 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Hmgb1P63158 Bdkrb1-202ENSMUST00000182899 1313 ntAPPRIS P1 TSL 5 BASIC18.04■□□□□ 0.48
Hmgb1P63158 Bdkrb1-201ENSMUST00000041229 1338 ntAPPRIS P1 BASIC18.04■□□□□ 0.48
Hmgb1P63158 Crhbp-201ENSMUST00000045583 1701 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
Hmgb1P63158 Luc7l2-213ENSMUST00000163047 3141 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
Hmgb1P63158 Ly6e-201ENSMUST00000051698 2281 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Hmgb1P63158 Wdr55-201ENSMUST00000049323 1498 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Hmgb1P63158 Syt8-202ENSMUST00000105976 1289 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
Hmgb1P63158 Syt8-205ENSMUST00000122393 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
Hmgb1P63158 Nnat-205ENSMUST00000153739 1146 ntAPPRIS ALT1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Hmgb1P63158 Nnat-206ENSMUST00000172487 404 ntTSL 5 BASIC18.04■□□□□ 0.48
Hmgb1P63158 Gm16998-201ENSMUST00000181899 1230 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
Hmgb1P63158 D330020A13Rik-201ENSMUST00000181956 1069 ntAPPRIS P1 BASIC18.04■□□□□ 0.48
Hmgb1P63158 2810405F15Rik-201ENSMUST00000195368 932 ntBASIC18.04■□□□□ 0.48
Hmgb1P63158 Gm21057-201ENSMUST00000206022 670 ntTSL 3 BASIC18.04■□□□□ 0.48
Hmgb1P63158 Gm30025-201ENSMUST00000218555 728 ntBASIC18.04■□□□□ 0.48
Hmgb1P63158 Pomc-204ENSMUST00000219543 1043 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Hmgb1P63158 AC159205.3-201ENSMUST00000224614 874 ntBASIC18.04■□□□□ 0.48
Hmgb1P63158 Prdx5-201ENSMUST00000025904 1262 ntAPPRIS P2 TSL 1 (best) BASIC18.04■□□□□ 0.48
Hmgb1P63158 Hist1h2ai-201ENSMUST00000070124 393 ntAPPRIS P1 BASIC18.04■□□□□ 0.48
Hmgb1P63158 Mfap2-201ENSMUST00000071977 1073 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Hmgb1P63158 Hist1h2an-201ENSMUST00000091751 393 ntAPPRIS P1 BASIC18.04■□□□□ 0.48
Hmgb1P63158 Dlx1-201ENSMUST00000037119 4111 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Hmgb1P63158 Il11ra1-204ENSMUST00000108042 1768 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Hmgb1P63158 Rassf1-204ENSMUST00000122225 1783 ntTSL 5 BASIC18.04■□□□□ 0.48
Hmgb1P63158 Tmem260-201ENSMUST00000111735 5485 ntAPPRIS P3 TSL 1 (best) BASIC18.04■□□□□ 0.48
Hmgb1P63158 Phax-201ENSMUST00000008445 1942 ntAPPRIS P3 TSL 1 (best) BASIC18.04■□□□□ 0.48
Hmgb1P63158 Mydgf-201ENSMUST00000019723 1710 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Hmgb1P63158 Rap1gap-202ENSMUST00000097837 3168 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
Hmgb1P63158 Scin-201ENSMUST00000002640 2995 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Hmgb1P63158 Scrn2-201ENSMUST00000021249 1530 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Hmgb1P63158 Nrip1-201ENSMUST00000054178 4529 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Hmgb1P63158 Spsb2-203ENSMUST00000112473 1322 ntBASIC18.03■□□□□ 0.48
Hmgb1P63158 Plppr5-201ENSMUST00000039564 4670 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Hmgb1P63158 Lcmt2-201ENSMUST00000099486 2047 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
Hmgb1P63158 Gm13327-201ENSMUST00000133391 2741 ntTSL 5 BASIC18.03■□□□□ 0.48
Hmgb1P63158 Rnf168-203ENSMUST00000171474 4460 ntAPPRIS P2 TSL 1 (best) BASIC18.03■□□□□ 0.48
Hmgb1P63158 Ralgapa1-202ENSMUST00000110687 7874 ntAPPRIS P2 TSL 1 (best) BASIC18.03■□□□□ 0.48
Hmgb1P63158 Crem-234ENSMUST00000154470 1996 ntTSL 5 BASIC18.03■□□□□ 0.48
Hmgb1P63158 Kifc3-212ENSMUST00000213004 2453 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
Hmgb1P63158 Atoh1-201ENSMUST00000101351 2121 ntAPPRIS P1 BASIC18.03■□□□□ 0.48
Hmgb1P63158 4930526A20Rik-201ENSMUST00000134228 941 ntBASIC18.03■□□□□ 0.48
Hmgb1P63158 Gm20403-201ENSMUST00000173803 372 ntAPPRIS P1 BASIC18.03■□□□□ 0.48
Hmgb1P63158 AC069562.2-201ENSMUST00000224644 2146 ntBASIC18.03■□□□□ 0.48
Hmgb1P63158 Aim2-204ENSMUST00000166137 2079 ntAPPRIS P1 TSL 5 BASIC18.03■□□□□ 0.48
Hmgb1P63158 Hhatl-201ENSMUST00000035110 1870 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Hmgb1P63158 Degs1-201ENSMUST00000035295 2048 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Hmgb1P63158 Vangl2-201ENSMUST00000027837 5698 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Hmgb1P63158 Map3k7cl-201ENSMUST00000026700 1652 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Hmgb1P63158 Gramd3-201ENSMUST00000070166 2605 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
Hmgb1P63158 Polr1c-201ENSMUST00000087026 1314 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
Hmgb1P63158 Stox2-208ENSMUST00000211737 4573 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
Hmgb1P63158 Chrna4-201ENSMUST00000067120 4565 ntAPPRIS P2 TSL 1 (best) BASIC18.02■□□□□ 0.48
Hmgb1P63158 Ube2j2-213ENSMUST00000166489 3339 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
Hmgb1P63158 Snx8-204ENSMUST00000196130 2547 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.48
Hmgb1P63158 Iqsec1-202ENSMUST00000101153 8036 ntAPPRIS P1 TSL 5 BASIC18.02■□□□□ 0.48
Hmgb1P63158 Rint1-205ENSMUST00000120869 1886 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
Hmgb1P63158 Gm15582-201ENSMUST00000132849 1581 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
Hmgb1P63158 Creb1-203ENSMUST00000171164 1287 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
Hmgb1P63158 A130048G24Rik-201ENSMUST00000193052 2750 ntBASIC18.02■□□□□ 0.48
Hmgb1P63158 Gm44450-201ENSMUST00000199528 114 ntBASIC18.02■□□□□ 0.48
Hmgb1P63158 Akip1-201ENSMUST00000033335 1028 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
Hmgb1P63158 Cmtm7-201ENSMUST00000035009 993 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
Hmgb1P63158 Ret-202ENSMUST00000088790 4497 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.47
Hmgb1P63158 Uchl5-201ENSMUST00000018333 1845 ntAPPRIS ALT1 TSL 1 (best) BASIC18.02■□□□□ 0.47
Hmgb1P63158 Bpifb3-201ENSMUST00000088950 1821 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
Hmgb1P63158 Dgkz-201ENSMUST00000028667 3584 ntAPPRIS P2 TSL 1 (best) BASIC18.02■□□□□ 0.47
Hmgb1P63158 Cenpw-201ENSMUST00000099985 1532 ntAPPRIS P2 TSL 1 (best) BASIC18.02■□□□□ 0.47
Hmgb1P63158 Fndc11-201ENSMUST00000050026 1387 ntTSL 1 (best) BASIC18.02■□□□□ 0.47
Hmgb1P63158 Paqr9-201ENSMUST00000079597 8367 ntAPPRIS P1 BASIC18.02■□□□□ 0.47
Hmgb1P63158 Dnajc25-201ENSMUST00000095070 4023 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Hmgb1P63158 Tfeb-204ENSMUST00000113288 2328 ntAPPRIS ALT2 TSL 1 (best) BASIC18.01■□□□□ 0.47
Hmgb1P63158 Gm17200-201ENSMUST00000170214 2022 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
Hmgb1P63158 Lrp6-201ENSMUST00000032322 9368 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Hmgb1P63158 Fam76a-202ENSMUST00000097856 1863 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
Hmgb1P63158 Stxbp3-201ENSMUST00000102621 2419 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Hmgb1P63158 Dtx2-202ENSMUST00000111142 2650 ntAPPRIS ALT2 TSL 1 (best) BASIC18.01■□□□□ 0.47
Hmgb1P63158 4930448E22Rik-201ENSMUST00000181712 1581 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
Hmgb1P63158 Gramd4-204ENSMUST00000138134 4292 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
Hmgb1P63158 Gm7854-202ENSMUST00000187409 1433 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
Hmgb1P63158 Plaa-201ENSMUST00000107107 2784 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Hmgb1P63158 Nploc4-201ENSMUST00000044271 4121 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Hmgb1P63158 Gpha2-202ENSMUST00000113526 762 ntAPPRIS P1 TSL 5 BASIC18.01■□□□□ 0.47
Hmgb1P63158 2210408F21Rik-211ENSMUST00000151800 750 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
Hmgb1P63158 Gm5091-201ENSMUST00000181658 1179 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
Hmgb1P63158 Gm42884-202ENSMUST00000202523 423 ntTSL 3 BASIC18.01■□□□□ 0.47
Hmgb1P63158 Gpha2-201ENSMUST00000025698 609 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Hmgb1P63158 Angptl8-201ENSMUST00000058777 865 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Hmgb1P63158 Exosc5-201ENSMUST00000079634 1020 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Hmgb1P63158 Anks1b-219ENSMUST00000182600 1697 ntTSL 5 BASIC18.01■□□□□ 0.47
Hmgb1P63158 Ppm1d-201ENSMUST00000020835 2899 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Hmgb1P63158 Zswim1-201ENSMUST00000017908 2705 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Hmgb1P63158 Zfp655-206ENSMUST00000200039 1765 ntAPPRIS ALT1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Hmgb1P63158 Wipf3-204ENSMUST00000132855 4516 ntAPPRIS P4 TSL 5 BASIC18.01■□□□□ 0.47
Hmgb1P63158 Rgs9-201ENSMUST00000020920 2434 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
Hmgb1P63158 Kctd6-202ENSMUST00000170111 3052 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Hmgb1P63158 Nfkbid-201ENSMUST00000046177 2039 ntAPPRIS P2 TSL 1 (best) BASIC18.01■□□□□ 0.47
Retrieved 100 of 76,532 protein–RNA pairs in 30.6 ms