Protein–RNA interactions for Protein: P43241

Cdx2, Homeobox protein CDX-2, mousemouse

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx2P43241 Gm27628-201ENSMUST00000184911 107 ntBASIC15.57■□□□□ 0.08
Cdx2P43241 Gm2756-201ENSMUST00000195851 400 ntBASIC15.57■□□□□ 0.08
Cdx2P43241 D530014G21Rik-201ENSMUST00000208416 587 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
Cdx2P43241 Nsun5-201ENSMUST00000000940 2243 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Cdx2P43241 Mif4gd-201ENSMUST00000021087 1372 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Cdx2P43241 Crocc-203ENSMUST00000102491 6582 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Cdx2P43241 Mvk-201ENSMUST00000043760 1660 ntAPPRIS P3 TSL 1 (best) BASIC15.57■□□□□ 0.08
Cdx2P43241 Dcaf8-206ENSMUST00000192704 2859 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Cdx2P43241 Btnl9-201ENSMUST00000046522 5273 ntAPPRIS P2 TSL 1 (best) BASIC15.57■□□□□ 0.08
Cdx2P43241 Taf6l-213ENSMUST00000189739 1794 ntTSL 5 BASIC15.57■□□□□ 0.08
Cdx2P43241 Tmem127-201ENSMUST00000035871 4811 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Cdx2P43241 Tedc2-201ENSMUST00000024930 2166 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Cdx2P43241 Nxnl1-201ENSMUST00000048243 2285 ntAPPRIS P1 TSL 2 BASIC15.56■□□□□ 0.08
Cdx2P43241 Irx5-201ENSMUST00000034184 2450 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Cdx2P43241 Ext2-212ENSMUST00000184931 2629 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
Cdx2P43241 Chst1-201ENSMUST00000065797 2680 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Cdx2P43241 Btbd2-201ENSMUST00000003434 3026 ntAPPRIS P2 TSL 5 BASIC15.56■□□□□ 0.08
Cdx2P43241 Ocel1-203ENSMUST00000110052 5285 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
Cdx2P43241 Ndufs7-202ENSMUST00000105364 983 ntAPPRIS P1 TSL 5 BASIC15.56■□□□□ 0.08
Cdx2P43241 Cdpf1-203ENSMUST00000134631 786 ntAPPRIS P1 TSL 5 BASIC15.56■□□□□ 0.08
Cdx2P43241 Acyp2-201ENSMUST00000074613 863 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Cdx2P43241 Gm17018-201ENSMUST00000047057 1345 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Cdx2P43241 Tssc4-206ENSMUST00000177841 1364 ntAPPRIS P1 TSL 2 BASIC15.56■□□□□ 0.08
Cdx2P43241 Gm26718-201ENSMUST00000181048 1378 ntTSL 5 BASIC15.56■□□□□ 0.08
Cdx2P43241 Pgc-201ENSMUST00000024782 1388 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Cdx2P43241 Mrm2-201ENSMUST00000031536 1443 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Cdx2P43241 Prlhr-201ENSMUST00000051277 1572 ntAPPRIS P1 BASIC15.56■□□□□ 0.08
Cdx2P43241 Coq6-201ENSMUST00000021661 1602 ntAPPRIS P2 TSL 1 (best) BASIC15.56■□□□□ 0.08
Cdx2P43241 Kdf1-201ENSMUST00000042919 1708 ntAPPRIS P2 TSL 1 (best) BASIC15.56■□□□□ 0.08
Cdx2P43241 E330011M16Rik-201ENSMUST00000193614 1794 ntBASIC15.56■□□□□ 0.08
Cdx2P43241 Slc25a20-201ENSMUST00000035222 1783 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Cdx2P43241 Slc39a10-201ENSMUST00000027131 5498 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Cdx2P43241 5031425F14Rik-201ENSMUST00000127920 2098 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
Cdx2P43241 Kmt5c-201ENSMUST00000098853 2189 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Cdx2P43241 Gm37519-201ENSMUST00000191687 2210 ntBASIC15.56■□□□□ 0.08
Cdx2P43241 Gm42939-201ENSMUST00000197514 2205 ntBASIC15.56■□□□□ 0.08
Cdx2P43241 Rusc2-202ENSMUST00000098106 5325 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Cdx2P43241 Itsn1-201ENSMUST00000056482 5364 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
Cdx2P43241 Epn1-202ENSMUST00000098845 2565 ntAPPRIS P2 TSL 1 (best) BASIC15.55■□□□□ 0.08
Cdx2P43241 Il1rn-201ENSMUST00000114482 1986 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Cdx2P43241 Layn-204ENSMUST00000217212 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC15.55■□□□□ 0.08
Cdx2P43241 Cope-201ENSMUST00000066469 1300 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Cdx2P43241 Tmem217-201ENSMUST00000114683 904 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Cdx2P43241 Gm6184-201ENSMUST00000120403 1261 ntBASIC15.55■□□□□ 0.08
Cdx2P43241 Gm9727-201ENSMUST00000161387 555 ntBASIC15.55■□□□□ 0.08
Cdx2P43241 1700025J12Rik-201ENSMUST00000205586 630 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
Cdx2P43241 Gins1-201ENSMUST00000028948 1087 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Cdx2P43241 Pfn3-201ENSMUST00000054146 545 ntAPPRIS P1 BASIC15.55■□□□□ 0.08
Cdx2P43241 Fmr1nb-201ENSMUST00000069731 799 ntAPPRIS ALT2 TSL 1 (best) BASIC15.55■□□□□ 0.08
Cdx2P43241 Sumo1-201ENSMUST00000091374 1215 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Cdx2P43241 Auh-202ENSMUST00000110031 3235 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
Cdx2P43241 Rnf26-201ENSMUST00000056328 2724 ntAPPRIS P2 BASIC15.55■□□□□ 0.08
Cdx2P43241 Smox-204ENSMUST00000110181 2299 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
Cdx2P43241 Gm36447-201ENSMUST00000201101 1978 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
Cdx2P43241 Med9-201ENSMUST00000081980 1920 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Cdx2P43241 Insm1-201ENSMUST00000089257 3100 ntAPPRIS P1 BASIC15.54■□□□□ 0.08
Cdx2P43241 Hand1-203ENSMUST00000160392 1806 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Cdx2P43241 Fosl1-201ENSMUST00000025850 1707 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Cdx2P43241 Ssfa2-203ENSMUST00000111788 4976 ntAPPRIS ALT2 TSL 5 BASIC15.54■□□□□ 0.08
Cdx2P43241 Map1lc3b-204ENSMUST00000181826 2633 ntBASIC15.54■□□□□ 0.08
Cdx2P43241 Ercc6l2-202ENSMUST00000021926 1592 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
Cdx2P43241 Rnf157-201ENSMUST00000100202 4619 ntAPPRIS P2 TSL 1 (best) BASIC15.54■□□□□ 0.08
Cdx2P43241 Ubtf-204ENSMUST00000107117 3258 ntAPPRIS ALT2 TSL 5 BASIC15.54■□□□□ 0.08
Cdx2P43241 Pth1r-204ENSMUST00000198865 2201 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Cdx2P43241 Lancl2-202ENSMUST00000072954 2245 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Cdx2P43241 Gm10518-201ENSMUST00000097454 1301 ntAPPRIS P1 BASIC15.54■□□□□ 0.08
Cdx2P43241 Nmt2-203ENSMUST00000102989 2162 ntAPPRIS P1 TSL 5 BASIC15.54■□□□□ 0.08
Cdx2P43241 Gm23935-201ENSMUST00000102303 57 ntBASIC15.54■□□□□ 0.08
Cdx2P43241 Gm24270-201ENSMUST00000102326 57 ntBASIC15.54■□□□□ 0.08
Cdx2P43241 Gm4995-201ENSMUST00000117247 432 ntBASIC15.54■□□□□ 0.08
Cdx2P43241 Gm14641-201ENSMUST00000136486 452 ntTSL 3 BASIC15.54■□□□□ 0.08
Cdx2P43241 Gm24245-201ENSMUST00000157318 57 ntBASIC15.54■□□□□ 0.08
Cdx2P43241 Ankrd65-202ENSMUST00000165000 1140 ntAPPRIS ALT2 TSL 5 BASIC15.54■□□□□ 0.08
Cdx2P43241 Nudt3-209ENSMUST00000176876 465 ntTSL 2 BASIC15.54■□□□□ 0.08
Cdx2P43241 Rpl18-204ENSMUST00000209693 535 ntTSL 5 BASIC15.54■□□□□ 0.08
Cdx2P43241 Gm9172-201ENSMUST00000212092 954 ntBASIC15.54■□□□□ 0.08
Cdx2P43241 Nudt3-202ENSMUST00000062397 558 ntTSL 3 BASIC15.54■□□□□ 0.08
Cdx2P43241 Gne-202ENSMUST00000102936 2920 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Cdx2P43241 Ppp2r1b-211ENSMUST00000176798 2074 ntAPPRIS ALT2 TSL 5 BASIC15.54■□□□□ 0.08
Cdx2P43241 Pigw-201ENSMUST00000067058 2675 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Cdx2P43241 Fam104a-201ENSMUST00000120194 2619 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Cdx2P43241 Ppp1r3f-205ENSMUST00000150787 4760 ntAPPRIS ALT2 TSL 1 (best) BASIC15.54■□□□□ 0.08
Cdx2P43241 Dok3-202ENSMUST00000223563 1644 ntAPPRIS P1 BASIC15.54■□□□□ 0.08
Cdx2P43241 Spatc1-201ENSMUST00000074173 1605 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Cdx2P43241 Bcl11b-203ENSMUST00000109891 2888 ntAPPRIS ALT2 TSL 1 (best) BASIC15.54■□□□□ 0.08
Cdx2P43241 Sox4-201ENSMUST00000067230 4795 ntAPPRIS P1 BASIC15.54■□□□□ 0.08
Cdx2P43241 Nfatc3-201ENSMUST00000109308 5984 ntAPPRIS P2 TSL 1 (best) BASIC15.53■□□□□ 0.08
Cdx2P43241 Mex3b-201ENSMUST00000082237 3355 ntAPPRIS P1 TSL 2 BASIC15.53■□□□□ 0.08
Cdx2P43241 Pqlc2-205ENSMUST00000172747 1405 ntAPPRIS P2 TSL 5 BASIC15.53■□□□□ 0.08
Cdx2P43241 Gm26795-201ENSMUST00000180993 1952 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
Cdx2P43241 AC131586.3-201ENSMUST00000228355 1367 ntBASIC15.53■□□□□ 0.08
Cdx2P43241 Tdh-201ENSMUST00000022522 1881 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Cdx2P43241 Gm3928-201ENSMUST00000121141 1307 ntBASIC15.53■□□□□ 0.08
Cdx2P43241 Ero1l-201ENSMUST00000022378 4418 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
Cdx2P43241 Qdpr-204ENSMUST00000120867 1234 ntTSL 5 BASIC15.53■□□□□ 0.08
Cdx2P43241 E530001F21Rik-201ENSMUST00000120991 730 ntBASIC15.53■□□□□ 0.08
Cdx2P43241 Gm11536-201ENSMUST00000130733 535 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
Cdx2P43241 Btf3-204ENSMUST00000134542 780 ntAPPRIS P1 TSL 2 BASIC15.53■□□□□ 0.08
Cdx2P43241 Gm24513-201ENSMUST00000174964 138 ntBASIC15.53■□□□□ 0.08
Cdx2P43241 Gm27397-201ENSMUST00000184997 107 ntBASIC15.53■□□□□ 0.08
Retrieved 100 of 76,532 protein–RNA pairs in 649 ms