Protein–RNA interactions for Protein: O88609

Lmx1b, LIM homeobox transcription factor 1-beta, mousemouse

Predictions only

Length 395 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lmx1bO88609 AL590614.2-201ENSMUST00000225374 1937 ntBASIC14.86□□□□□ -0.03
Lmx1bO88609 Slc38a10-202ENSMUST00000053692 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC14.86□□□□□ -0.03
Lmx1bO88609 Abcd4-201ENSMUST00000021666 2309 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Lmx1bO88609 Ttc14-203ENSMUST00000117915 4913 ntAPPRIS ALT2 TSL 1 (best) BASIC14.85□□□□□ -0.03
Lmx1bO88609 Susd1-202ENSMUST00000107544 3220 ntAPPRIS ALT2 TSL 5 BASIC14.85□□□□□ -0.03
Lmx1bO88609 Gabra5-202ENSMUST00000206382 2607 ntAPPRIS P1 TSL 5 BASIC14.85□□□□□ -0.03
Lmx1bO88609 Synpo-201ENSMUST00000097566 5060 ntAPPRIS P3 TSL 1 (best) BASIC14.85□□□□□ -0.03
Lmx1bO88609 Osbpl1a-208ENSMUST00000121888 2674 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
Lmx1bO88609 Akap8l-201ENSMUST00000050214 2075 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Lmx1bO88609 Celf3-208ENSMUST00000198316 2505 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
Lmx1bO88609 Atf6b-202ENSMUST00000173984 2315 ntAPPRIS ALT2 TSL 5 BASIC14.85□□□□□ -0.03
Lmx1bO88609 Rnf186-201ENSMUST00000116094 1249 ntAPPRIS P1 BASIC14.85□□□□□ -0.03
Lmx1bO88609 Gm28051-201ENSMUST00000179306 445 ntAPPRIS P1 TSL 2 BASIC14.85□□□□□ -0.03
Lmx1bO88609 Lce1a2-201ENSMUST00000029530 715 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Lmx1bO88609 Ifi27l2b-201ENSMUST00000044687 1093 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Lmx1bO88609 Lce1a1-201ENSMUST00000074142 705 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Lmx1bO88609 Adam22-201ENSMUST00000046838 2773 ntAPPRIS P3 TSL 1 (best) BASIC14.85□□□□□ -0.03
Lmx1bO88609 Iqgap2-201ENSMUST00000068603 5771 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Lmx1bO88609 Ints8-201ENSMUST00000044616 3433 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Lmx1bO88609 Clip2-202ENSMUST00000100647 4994 ntAPPRIS P4 TSL 1 (best) BASIC14.85□□□□□ -0.03
Lmx1bO88609 Myo9b-206ENSMUST00000212935 6316 ntAPPRIS ALT2 TSL 5 BASIC14.85□□□□□ -0.03
Lmx1bO88609 2810468N07Rik-201ENSMUST00000163493 1349 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
Lmx1bO88609 Pi4kb-202ENSMUST00000107251 2895 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
Lmx1bO88609 Cadm1-204ENSMUST00000114548 4482 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
Lmx1bO88609 Rap1gap-202ENSMUST00000097837 3168 ntAPPRIS ALT2 TSL 1 (best) BASIC14.85□□□□□ -0.03
Lmx1bO88609 Gm45203-201ENSMUST00000206384 1831 ntBASIC14.85□□□□□ -0.03
Lmx1bO88609 Opn4-202ENSMUST00000168444 2075 ntAPPRIS ALT2 TSL 1 (best) BASIC14.85□□□□□ -0.03
Lmx1bO88609 Acbd3-201ENSMUST00000027780 3471 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Lmx1bO88609 Isl2-201ENSMUST00000034869 1854 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Lmx1bO88609 Rbl2-201ENSMUST00000034091 4925 ntAPPRIS P3 TSL 1 (best) BASIC14.84□□□□□ -0.03
Lmx1bO88609 Dnm2-204ENSMUST00000165766 3063 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
Lmx1bO88609 Add1-204ENSMUST00000114338 4007 ntAPPRIS ALT2 TSL 1 (best) BASIC14.84□□□□□ -0.03
Lmx1bO88609 Esyt2-205ENSMUST00000220816 4287 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Lmx1bO88609 Mycs-201ENSMUST00000058404 2368 ntAPPRIS P1 BASIC14.84□□□□□ -0.03
Lmx1bO88609 AC154231.1-201ENSMUST00000220564 2175 ntBASIC14.84□□□□□ -0.03
Lmx1bO88609 Wdr55-201ENSMUST00000049323 1498 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Lmx1bO88609 Gm37711-201ENSMUST00000194907 1749 ntTSL 5 BASIC14.84□□□□□ -0.03
Lmx1bO88609 Cnpy1-202ENSMUST00000118882 1984 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
Lmx1bO88609 Ccdc106-204ENSMUST00000207974 2492 ntTSL 2 BASIC14.84□□□□□ -0.03
Lmx1bO88609 Dok5-201ENSMUST00000029075 1768 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Lmx1bO88609 Lcn12-202ENSMUST00000114245 619 ntAPPRIS ALT2 TSL 1 (best) BASIC14.84□□□□□ -0.03
Lmx1bO88609 Dohh-202ENSMUST00000121047 946 ntTSL 2 BASIC14.84□□□□□ -0.03
Lmx1bO88609 C030037D09Rik-202ENSMUST00000136201 1216 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
Lmx1bO88609 Mpst-202ENSMUST00000167140 1279 ntAPPRIS P1 TSL 5 BASIC14.84□□□□□ -0.03
Lmx1bO88609 Ephx4-201ENSMUST00000049146 1279 ntAPPRIS P1 TSL 2 BASIC14.84□□□□□ -0.03
Lmx1bO88609 Rad51d-203ENSMUST00000092844 1228 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
Lmx1bO88609 Tmem132e-201ENSMUST00000054245 4386 ntAPPRIS P2 TSL 1 (best) BASIC14.84□□□□□ -0.03
Lmx1bO88609 Gm28265-201ENSMUST00000188201 2319 ntBASIC14.84□□□□□ -0.03
Lmx1bO88609 Pard3-226ENSMUST00000162907 4682 ntAPPRIS ALT2 TSL 1 (best) BASIC14.84□□□□□ -0.03
Lmx1bO88609 Nr1h2-204ENSMUST00000107912 1839 ntAPPRIS P3 TSL 1 (best) BASIC14.84□□□□□ -0.03
Lmx1bO88609 Pmm1-201ENSMUST00000023112 1300 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Lmx1bO88609 Ngly1-201ENSMUST00000022310 2935 ntAPPRIS P2 TSL 1 (best) BASIC14.84□□□□□ -0.03
Lmx1bO88609 Kank3-202ENSMUST00000172649 2652 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
Lmx1bO88609 Tle2-213ENSMUST00000146358 2749 ntAPPRIS P3 TSL 1 (best) BASIC14.84□□□□□ -0.03
Lmx1bO88609 Eif4a2-201ENSMUST00000023599 2208 ntAPPRIS P3 TSL 1 (best) BASIC14.84□□□□□ -0.03
Lmx1bO88609 Ptpn5-201ENSMUST00000033142 3145 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
Lmx1bO88609 Mrpl49-201ENSMUST00000007482 1722 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
Lmx1bO88609 Camsap2-203ENSMUST00000192314 4916 ntAPPRIS ALT2 TSL 1 (best) BASIC14.83□□□□□ -0.03
Lmx1bO88609 Hps6-201ENSMUST00000099393 2696 ntAPPRIS P1 BASIC14.83□□□□□ -0.03
Lmx1bO88609 Kdm2a-202ENSMUST00000075856 7242 ntAPPRIS P1 TSL 5 BASIC14.83□□□□□ -0.04
Lmx1bO88609 Dph1-201ENSMUST00000044949 2139 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Lmx1bO88609 Gpr161-202ENSMUST00000178700 1827 ntAPPRIS ALT2 TSL 1 (best) BASIC14.83□□□□□ -0.04
Lmx1bO88609 Ogfod2-201ENSMUST00000024470 1596 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Lmx1bO88609 Dnaaf3-201ENSMUST00000094897 2224 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Lmx1bO88609 Sox4-201ENSMUST00000067230 4795 ntAPPRIS P1 BASIC14.83□□□□□ -0.04
Lmx1bO88609 Gm7153-201ENSMUST00000117092 455 ntBASIC14.83□□□□□ -0.04
Lmx1bO88609 Gm13216-201ENSMUST00000117145 591 ntBASIC14.83□□□□□ -0.04
Lmx1bO88609 Gzmm-201ENSMUST00000020549 1287 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Lmx1bO88609 Cmtm7-202ENSMUST00000084867 874 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
Lmx1bO88609 Spr-ps1-201ENSMUST00000089584 605 ntBASIC14.83□□□□□ -0.04
Lmx1bO88609 Irak1-201ENSMUST00000033769 2890 ntAPPRIS ALT2 TSL 1 (best) BASIC14.83□□□□□ -0.04
Lmx1bO88609 Secisbp2-202ENSMUST00000110044 1915 ntTSL 2 BASIC14.83□□□□□ -0.04
Lmx1bO88609 Slc16a7-205ENSMUST00000210780 2562 ntAPPRIS P1 TSL 5 BASIC14.83□□□□□ -0.04
Lmx1bO88609 Slc35f2-201ENSMUST00000048670 2558 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Lmx1bO88609 Kif7-202ENSMUST00000178048 4524 ntAPPRIS ALT2 TSL 1 (best) BASIC14.83□□□□□ -0.04
Lmx1bO88609 Npm1-201ENSMUST00000075641 1633 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Lmx1bO88609 Trim31-201ENSMUST00000078438 2257 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Lmx1bO88609 Plppr5-202ENSMUST00000106473 4294 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
Lmx1bO88609 Hsd17b1-201ENSMUST00000019445 1339 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Lmx1bO88609 Usp6nl-202ENSMUST00000114937 7484 ntAPPRIS ALT2 TSL 1 (best) BASIC14.83□□□□□ -0.04
Lmx1bO88609 Nr1h3-202ENSMUST00000111354 1738 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Lmx1bO88609 Atp6v1b2-201ENSMUST00000006435 2825 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Lmx1bO88609 Usb1-201ENSMUST00000034245 1758 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Lmx1bO88609 Ebf1-203ENSMUST00000109268 2864 ntAPPRIS ALT1 TSL 5 BASIC14.83□□□□□ -0.04
Lmx1bO88609 Ikzf1-203ENSMUST00000065433 4697 ntAPPRIS ALT2 TSL 5 BASIC14.83□□□□□ -0.04
Lmx1bO88609 Zfp764-201ENSMUST00000059199 2508 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Lmx1bO88609 Ccnl1-201ENSMUST00000029416 2169 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
Lmx1bO88609 Chmp2b-201ENSMUST00000004965 1838 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Lmx1bO88609 Gfra2-202ENSMUST00000227633 1480 ntBASIC14.82□□□□□ -0.04
Lmx1bO88609 Rab6b-201ENSMUST00000035155 5007 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Lmx1bO88609 Cacna1h-205ENSMUST00000159610 8230 ntAPPRIS ALT2 TSL 1 (best) BASIC14.82□□□□□ -0.04
Lmx1bO88609 Cacna1h-201ENSMUST00000078496 8220 ntAPPRIS P2 TSL 1 (best) BASIC14.82□□□□□ -0.04
Lmx1bO88609 Slc16a3-202ENSMUST00000100130 2386 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Lmx1bO88609 Gm24589-201ENSMUST00000116692 94 ntBASIC14.82□□□□□ -0.04
Lmx1bO88609 Pqlc1-208ENSMUST00000144468 1050 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
Lmx1bO88609 CAAA01066804.1-201ENSMUST00000217800 611 ntTSL 3 BASIC14.82□□□□□ -0.04
Lmx1bO88609 Mrpl36-202ENSMUST00000221730 717 ntAPPRIS P1 TSL 3 BASIC14.82□□□□□ -0.04
Lmx1bO88609 Rpl3l-202ENSMUST00000170239 1375 ntAPPRIS P1 TSL 5 BASIC14.82□□□□□ -0.04
Lmx1bO88609 Anxa2-201ENSMUST00000034756 1447 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Lmx1bO88609 Gm26774-201ENSMUST00000181534 2401 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
Retrieved 100 of 76,532 protein–RNA pairs in 36.9 ms