Protein–RNA interactions for Protein: E0CXC2

Gm28043, E3 ubiquitin-protein ligase RNF8, mousemouse

Predictions only

Length 719 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Gm28043E0CXC2 Sema6b-201ENSMUST00000001256 3736 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Gm28043E0CXC2 Cend1-202ENSMUST00000124444 1733 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Gm28043E0CXC2 Eif4h-201ENSMUST00000036125 2367 ntAPPRIS ALT1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Gm28043E0CXC2 2810425M01Rik-201ENSMUST00000180790 1850 ntTSL 5 BASIC16.5■□□□□ 0.23
Gm28043E0CXC2 Tekt1-203ENSMUST00000108503 1397 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Gm28043E0CXC2 Mri1-203ENSMUST00000126435 2819 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Gm28043E0CXC2 Lrch1-205ENSMUST00000228252 3125 ntAPPRIS ALT2 BASIC16.5■□□□□ 0.23
Gm28043E0CXC2 Tpcn1-201ENSMUST00000046426 4712 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Gm28043E0CXC2 Dhx33-202ENSMUST00000108527 5184 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Gm28043E0CXC2 Ttll11-202ENSMUST00000112976 3077 ntAPPRIS ALT2 TSL 5 BASIC16.49■□□□□ 0.23
Gm28043E0CXC2 Csk-201ENSMUST00000034863 2749 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Gm28043E0CXC2 Foxc2-201ENSMUST00000054691 2725 ntAPPRIS P1 BASIC16.49■□□□□ 0.23
Gm28043E0CXC2 Lrriq4-203ENSMUST00000172350 1797 ntAPPRIS P3 TSL 5 BASIC16.49■□□□□ 0.23
Gm28043E0CXC2 Zswim4-201ENSMUST00000039480 4625 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Gm28043E0CXC2 Nkx2-2-203ENSMUST00000109970 1053 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
Gm28043E0CXC2 Zfp384-207ENSMUST00000112427 3072 ntAPPRIS P2 TSL 5 BASIC16.49■□□□□ 0.23
Gm28043E0CXC2 Ubtf-207ENSMUST00000128016 1062 ntTSL 2 BASIC16.49■□□□□ 0.23
Gm28043E0CXC2 Gssos2-201ENSMUST00000130859 727 ntTSL 3 BASIC16.49■□□□□ 0.23
Gm28043E0CXC2 Gm17661-201ENSMUST00000170317 270 ntBASIC16.49■□□□□ 0.23
Gm28043E0CXC2 Creb1-203ENSMUST00000171164 1287 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
Gm28043E0CXC2 Aig1-201ENSMUST00000019942 1439 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
Gm28043E0CXC2 Stard10-211ENSMUST00000210192 1258 ntAPPRIS P1 TSL 5 BASIC16.49■□□□□ 0.23
Gm28043E0CXC2 Casp3-203ENSMUST00000210534 583 ntTSL 5 BASIC16.49■□□□□ 0.23
Gm28043E0CXC2 Sae1-203ENSMUST00000210999 1254 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Gm28043E0CXC2 4930554C24Rik-202ENSMUST00000216019 1159 ntTSL 5 BASIC16.49■□□□□ 0.23
Gm28043E0CXC2 Rps12-206ENSMUST00000218221 460 ntTSL 5 BASIC16.49■□□□□ 0.23
Gm28043E0CXC2 4930474N05Rik-203ENSMUST00000226305 2313 ntAPPRIS P1 BASIC16.49■□□□□ 0.23
Gm28043E0CXC2 Serac1-201ENSMUST00000024570 2033 ntAPPRIS P3 TSL 1 (best) BASIC16.49■□□□□ 0.23
Gm28043E0CXC2 Map2k5-201ENSMUST00000034920 2310 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Gm28043E0CXC2 Taz-201ENSMUST00000069722 1851 ntAPPRIS P3 TSL 1 (best) BASIC16.49■□□□□ 0.23
Gm28043E0CXC2 Fxn-201ENSMUST00000081333 1114 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Gm28043E0CXC2 Casc4-201ENSMUST00000078752 4215 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
Gm28043E0CXC2 Ppp1r2-201ENSMUST00000060188 4078 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Gm28043E0CXC2 Ets1-206ENSMUST00000184887 2107 ntTSL 5 BASIC16.49■□□□□ 0.23
Gm28043E0CXC2 Cadm3-202ENSMUST00000111220 5155 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Gm28043E0CXC2 Uvrag-201ENSMUST00000037968 5157 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Gm28043E0CXC2 App-203ENSMUST00000226801 3299 ntAPPRIS ALT2 BASIC16.49■□□□□ 0.23
Gm28043E0CXC2 Msl2-201ENSMUST00000085177 4889 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Gm28043E0CXC2 Itgb7-201ENSMUST00000001327 2674 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Gm28043E0CXC2 Spg21-201ENSMUST00000034955 2680 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Gm28043E0CXC2 Pcdha2-201ENSMUST00000115662 5361 ntAPPRIS P2 TSL 1 (best) BASIC16.49■□□□□ 0.23
Gm28043E0CXC2 Scamp3-201ENSMUST00000029684 1489 ntAPPRIS P3 TSL 1 (best) BASIC16.48■□□□□ 0.23
Gm28043E0CXC2 Anks1-203ENSMUST00000114842 5610 ntAPPRIS P3 TSL 1 (best) BASIC16.48■□□□□ 0.23
Gm28043E0CXC2 Letm2-208ENSMUST00000210616 2974 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
Gm28043E0CXC2 Naa35-201ENSMUST00000022038 3793 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Gm28043E0CXC2 Slc12a5-207ENSMUST00000202223 5690 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
Gm28043E0CXC2 Cacna1g-201ENSMUST00000021234 8139 ntAPPRIS ALT2 TSL 5 BASIC16.48■□□□□ 0.23
Gm28043E0CXC2 Krt90-201ENSMUST00000023714 2534 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Gm28043E0CXC2 Nr1h2-204ENSMUST00000107912 1839 ntAPPRIS P3 TSL 1 (best) BASIC16.48■□□□□ 0.23
Gm28043E0CXC2 Bend5-201ENSMUST00000030274 1826 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Gm28043E0CXC2 Relb-201ENSMUST00000049912 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
Gm28043E0CXC2 Tlx1os-201ENSMUST00000173437 620 ntTSL 3 BASIC16.48■□□□□ 0.23
Gm28043E0CXC2 Rsu1-209ENSMUST00000191959 720 ntTSL 3 BASIC16.48■□□□□ 0.23
Gm28043E0CXC2 Ube2a-208ENSMUST00000202812 719 ntTSL 2 BASIC16.48■□□□□ 0.23
Gm28043E0CXC2 Otx2os1-204ENSMUST00000227221 751 ntBASIC16.48■□□□□ 0.23
Gm28043E0CXC2 Wscd1-203ENSMUST00000108511 2866 ntAPPRIS P1 TSL 5 BASIC16.48■□□□□ 0.23
Gm28043E0CXC2 Fam184a-201ENSMUST00000020003 4164 ntAPPRIS P1 TSL 5 BASIC16.48■□□□□ 0.23
Gm28043E0CXC2 Kitl-202ENSMUST00000105283 5648 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Gm28043E0CXC2 Scin-201ENSMUST00000002640 2995 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Gm28043E0CXC2 Rfx5-202ENSMUST00000107253 4367 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
Gm28043E0CXC2 Zfp786-201ENSMUST00000058844 3191 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Gm28043E0CXC2 Actr8-201ENSMUST00000016115 2119 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Gm28043E0CXC2 Gabbr1-202ENSMUST00000172789 1460 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
Gm28043E0CXC2 4930426L09Rik-201ENSMUST00000028069 1459 ntAPPRIS P1 BASIC16.48■□□□□ 0.23
Gm28043E0CXC2 Hnrnpll-201ENSMUST00000061331 3116 ntAPPRIS P1 TSL 5 BASIC16.48■□□□□ 0.23
Gm28043E0CXC2 Rccd1-202ENSMUST00000121882 2324 ntAPPRIS P1 TSL 5 BASIC16.47■□□□□ 0.23
Gm28043E0CXC2 Rbmxl1-201ENSMUST00000049245 1695 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Gm28043E0CXC2 Trim31-201ENSMUST00000078438 2257 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Gm28043E0CXC2 Mthfsl-201ENSMUST00000113110 801 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Gm28043E0CXC2 Echdc2-204ENSMUST00000116309 1238 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Gm28043E0CXC2 Mthfs-203ENSMUST00000118870 705 ntTSL 3 BASIC16.47■□□□□ 0.23
Gm28043E0CXC2 Tmtc4-204ENSMUST00000126867 2952 ntAPPRIS P1 TSL 5 BASIC16.47■□□□□ 0.23
Gm28043E0CXC2 Gm17098-201ENSMUST00000166507 628 ntTSL 5 BASIC16.47■□□□□ 0.23
Gm28043E0CXC2 D330020A13Rik-201ENSMUST00000181956 1069 ntAPPRIS P1 BASIC16.47■□□□□ 0.23
Gm28043E0CXC2 Dctn3-201ENSMUST00000030158 973 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Gm28043E0CXC2 Lysmd2-201ENSMUST00000034702 1189 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Gm28043E0CXC2 Cmc1-201ENSMUST00000044220 1169 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Gm28043E0CXC2 Mthfs-201ENSMUST00000085256 816 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Gm28043E0CXC2 Nfat5-203ENSMUST00000125721 5899 ntAPPRIS ALT2 TSL 5 BASIC16.47■□□□□ 0.23
Gm28043E0CXC2 Kri1-205ENSMUST00000184326 2490 ntAPPRIS ALT2 TSL 5 BASIC16.47■□□□□ 0.23
Gm28043E0CXC2 Pi4k2a-201ENSMUST00000066778 3771 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Gm28043E0CXC2 Smarcc1-204ENSMUST00000197984 3538 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
Gm28043E0CXC2 Rffl-202ENSMUST00000071152 3633 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
Gm28043E0CXC2 Lhx6-208ENSMUST00000148852 1481 ntTSL 5 BASIC16.47■□□□□ 0.23
Gm28043E0CXC2 Tedc2-201ENSMUST00000024930 2166 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Gm28043E0CXC2 Nadk-203ENSMUST00000105613 3152 ntAPPRIS P2 TSL 1 (best) BASIC16.46■□□□□ 0.23
Gm28043E0CXC2 Wrb-201ENSMUST00000023913 2495 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Gm28043E0CXC2 Gm26526-201ENSMUST00000181075 2927 ntTSL 5 BASIC16.46■□□□□ 0.23
Gm28043E0CXC2 Hectd3-201ENSMUST00000050067 4583 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Gm28043E0CXC2 Klhl33-201ENSMUST00000164415 1602 ntTSL 5 BASIC16.46■□□□□ 0.23
Gm28043E0CXC2 E330009J07Rik-202ENSMUST00000101492 6742 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Gm28043E0CXC2 Etnk2-203ENSMUST00000135222 2297 ntAPPRIS P2 TSL 1 (best) BASIC16.46■□□□□ 0.23
Gm28043E0CXC2 Gm1673-203ENSMUST00000114383 511 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.23
Gm28043E0CXC2 Arl2-201ENSMUST00000025893 1144 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Gm28043E0CXC2 Mvb12a-201ENSMUST00000034272 1062 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Gm28043E0CXC2 Espn-202ENSMUST00000049305 1142 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
Gm28043E0CXC2 Tollip-202ENSMUST00000055819 1100 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
Gm28043E0CXC2 Nme2-202ENSMUST00000072566 734 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Gm28043E0CXC2 Gpr161-202ENSMUST00000178700 1827 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.23
Gm28043E0CXC2 Scamp4-201ENSMUST00000079883 1804 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Retrieved 100 of 76,532 protein–RNA pairs in 26 ms