Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 MTCO2P19-201ENST00000427513 598 ntBASIC4.89□□□□□ -1.63
COL3A1P02461 PTGES3P1-201ENST00000439531 483 ntBASIC4.89□□□□□ -1.63
COL3A1P02461 AC006480.1-201ENST00000449887 378 ntBASIC4.89□□□□□ -1.63
COL3A1P02461 AL451050.1-201ENST00000450126 415 ntBASIC4.89□□□□□ -1.63
COL3A1P02461 GUCA1C-203ENST00000471108 633 ntTSL 2 BASIC4.89□□□□□ -1.63
COL3A1P02461 RPL23AP44-201ENST00000482216 473 ntBASIC4.89□□□□□ -1.63
COL3A1P02461 AC006499.5-201ENST00000505037 514 ntBASIC4.89□□□□□ -1.63
COL3A1P02461 AC103957.1-202ENST00000519814 735 ntTSL 3 BASIC4.89□□□□□ -1.63
COL3A1P02461 AC108721.1-201ENST00000547088 348 ntTSL 3 BASIC4.89□□□□□ -1.63
COL3A1P02461 AL133370.1-201ENST00000554679 537 ntTSL 3 BASIC4.89□□□□□ -1.63
COL3A1P02461 CT45A3-201ENST00000597510 1076 ntAPPRIS P1 TSL 1 (best) BASIC4.89□□□□□ -1.63
COL3A1P02461 AF131215.7-201ENST00000602443 707 ntBASIC4.89□□□□□ -1.63
COL3A1P02461 AC012468.1-201ENST00000604888 430 ntBASIC4.89□□□□□ -1.63
COL3A1P02461 AC108747.1-201ENST00000609508 535 ntBASIC4.89□□□□□ -1.63
COL3A1P02461 AC244100.1-202ENST00000621554 382 ntBASIC4.89□□□□□ -1.63
COL3A1P02461 AC095031.1-201ENST00000623685 672 ntBASIC4.89□□□□□ -1.63
COL3A1P02461 SPAG5-AS1-202ENST00000424210 1551 ntTSL 2 BASIC4.89□□□□□ -1.63
COL3A1P02461 LINC00670-201ENST00000313495 2953 ntTSL 2 BASIC4.89□□□□□ -1.63
COL3A1P02461 STAG2-204ENST00000371157 5991 ntAPPRIS P3 TSL 1 (best) BASIC4.89□□□□□ -1.63
COL3A1P02461 RC3H1-201ENST00000258349 10988 ntAPPRIS P3 TSL 1 (best) BASIC4.89□□□□□ -1.63
COL3A1P02461 RTN4-208ENST00000404909 4102 ntTSL 1 (best) BASIC4.89□□□□□ -1.63
COL3A1P02461 ZNF90P1-201ENST00000480493 1951 ntBASIC4.89□□□□□ -1.63
COL3A1P02461 ZNF285-205ENST00000614994 6012 ntAPPRIS P3 TSL 1 (best) BASIC4.89□□□□□ -1.63
COL3A1P02461 DYNAP-201ENST00000321600 2027 ntAPPRIS P3 TSL 2 BASIC4.89□□□□□ -1.63
COL3A1P02461 AL022322.2-201ENST00000624072 20397 ntBASIC4.89□□□□□ -1.63
COL3A1P02461 MPDZ-211ENST00000536827 6176 ntAPPRIS ALT2 TSL 1 (best) BASIC4.89□□□□□ -1.63
COL3A1P02461 XIRP2-203ENST00000409195 12675 ntTSL 5 BASIC4.88□□□□□ -1.63
COL3A1P02461 LINC02232-201ENST00000509932 4079 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
COL3A1P02461 UBE2Q2P1-202ENST00000354771 883 ntBASIC4.88□□□□□ -1.63
COL3A1P02461 RNU6-796P-201ENST00000391086 107 ntBASIC4.88□□□□□ -1.63
COL3A1P02461 MS4A4E-202ENST00000398986 522 ntAPPRIS P1 TSL 5 BASIC4.88□□□□□ -1.63
COL3A1P02461 RNU2-16P-201ENST00000410712 136 ntBASIC4.88□□□□□ -1.63
COL3A1P02461 AL161449.1-201ENST00000414531 1199 ntBASIC4.88□□□□□ -1.63
COL3A1P02461 AC093159.1-201ENST00000416845 424 ntTSL 3 BASIC4.88□□□□□ -1.63
COL3A1P02461 EIF1P1-201ENST00000421436 341 ntBASIC4.88□□□□□ -1.63
COL3A1P02461 GS1-594A7.3-201ENST00000421585 574 ntTSL 2 BASIC4.88□□□□□ -1.63
COL3A1P02461 ATP5JP1-201ENST00000431631 322 ntBASIC4.88□□□□□ -1.63
COL3A1P02461 AL050321.1-201ENST00000432363 400 ntBASIC4.88□□□□□ -1.63
COL3A1P02461 AFF2-IT1-201ENST00000435346 443 ntTSL 5 BASIC4.88□□□□□ -1.63
COL3A1P02461 FGF7P5-201ENST00000441829 291 ntBASIC4.88□□□□□ -1.63
COL3A1P02461 NFIA-AS1-201ENST00000442027 384 ntTSL 2 BASIC4.88□□□□□ -1.63
COL3A1P02461 AL353613.1-201ENST00000443163 530 ntTSL 3 BASIC4.88□□□□□ -1.63
COL3A1P02461 AL671855.1-201ENST00000446875 1203 ntBASIC4.88□□□□□ -1.63
COL3A1P02461 SEPT7P3-201ENST00000455017 621 ntBASIC4.88□□□□□ -1.63
COL3A1P02461 RPL7P15-201ENST00000461190 712 ntBASIC4.88□□□□□ -1.63
COL3A1P02461 AC106707.2-201ENST00000484182 374 ntBASIC4.88□□□□□ -1.63
COL3A1P02461 AC092045.1-201ENST00000495716 1231 ntBASIC4.88□□□□□ -1.63
COL3A1P02461 AC105924.1-201ENST00000504057 339 ntTSL 3 BASIC4.88□□□□□ -1.63
COL3A1P02461 LINC02377-202ENST00000505436 523 ntTSL 5 BASIC4.88□□□□□ -1.63
COL3A1P02461 AC096576.3-201ENST00000505528 721 ntTSL 5 BASIC4.88□□□□□ -1.63
COL3A1P02461 AC008837.1-201ENST00000511513 412 ntBASIC4.88□□□□□ -1.63
COL3A1P02461 AC008780.1-201ENST00000513392 409 ntTSL 5 BASIC4.88□□□□□ -1.63
COL3A1P02461 AC093879.2-201ENST00000513645 427 ntTSL 3 BASIC4.88□□□□□ -1.63
COL3A1P02461 AC108863.1-201ENST00000520863 650 ntTSL 3 BASIC4.88□□□□□ -1.63
COL3A1P02461 AC008489.1-201ENST00000524271 483 ntBASIC4.88□□□□□ -1.63
COL3A1P02461 AL356022.1-202ENST00000555433 379 ntTSL 2 BASIC4.88□□□□□ -1.63
COL3A1P02461 AC087465.1-201ENST00000560574 245 ntBASIC4.88□□□□□ -1.63
COL3A1P02461 AC133485.5-201ENST00000563407 866 ntTSL 3 BASIC4.88□□□□□ -1.63
COL3A1P02461 AC106734.1-201ENST00000568646 663 ntBASIC4.88□□□□□ -1.63
COL3A1P02461 AP005530.1-201ENST00000572608 567 ntTSL 3 BASIC4.88□□□□□ -1.63
COL3A1P02461 AC011824.2-203ENST00000579975 633 ntTSL 3 BASIC4.88□□□□□ -1.63
COL3A1P02461 AL583832.1-201ENST00000603227 784 ntBASIC4.88□□□□□ -1.63
COL3A1P02461 AC072039.2-201ENST00000608883 439 ntBASIC4.88□□□□□ -1.63
COL3A1P02461 OR8B2-202ENST00000641451 1056 ntAPPRIS P1 BASIC4.88□□□□□ -1.63
COL3A1P02461 OSBPL6-201ENST00000190611 10513 ntAPPRIS P3 TSL 1 (best) BASIC4.88□□□□□ -1.63
COL3A1P02461 MTND4P31-201ENST00000425607 1343 ntBASIC4.88□□□□□ -1.63
COL3A1P02461 ADAM7-202ENST00000380789 3358 ntAPPRIS ALT2 TSL 5 BASIC4.88□□□□□ -1.63
COL3A1P02461 ZNF99-202ENST00000596209 7817 ntTSL 5 BASIC4.88□□□□□ -1.63
COL3A1P02461 TTC41P-203ENST00000548527 1475 ntTSL 5 BASIC4.88□□□□□ -1.63
COL3A1P02461 IL1R1-204ENST00000409929 1858 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
COL3A1P02461 CPD-202ENST00000543464 4007 ntTSL 2 BASIC4.88□□□□□ -1.63
COL3A1P02461 PLCB1-210ENST00000612075 6576 ntTSL 5 BASIC4.88□□□□□ -1.63
COL3A1P02461 RNU6-797P-201ENST00000363101 109 ntBASIC4.88□□□□□ -1.63
COL3A1P02461 U6.112-201ENST00000384129 70 ntBASIC4.88□□□□□ -1.63
COL3A1P02461 Y_RNA.516-201ENST00000384541 124 ntBASIC4.88□□□□□ -1.63
COL3A1P02461 CLYBL-AS1-201ENST00000416009 621 ntTSL 3 BASIC4.88□□□□□ -1.63
COL3A1P02461 AC096644.3-201ENST00000416788 338 ntBASIC4.88□□□□□ -1.63
COL3A1P02461 AL035423.1-201ENST00000420331 213 ntBASIC4.88□□□□□ -1.63
COL3A1P02461 HIGD1AP12-201ENST00000427832 281 ntBASIC4.88□□□□□ -1.63
COL3A1P02461 OFD1P13Y-201ENST00000431179 1232 ntBASIC4.88□□□□□ -1.63
COL3A1P02461 AC009263.1-201ENST00000441193 1239 ntBASIC4.88□□□□□ -1.63
COL3A1P02461 RBMX2P4-201ENST00000441256 376 ntBASIC4.88□□□□□ -1.63
COL3A1P02461 CASP3P1-201ENST00000446037 609 ntBASIC4.88□□□□□ -1.63
COL3A1P02461 AP000936.2-201ENST00000447151 681 ntBASIC4.88□□□□□ -1.63
COL3A1P02461 AL355592.1-201ENST00000450292 386 ntTSL 2 BASIC4.88□□□□□ -1.63
COL3A1P02461 SUMO2P2-201ENST00000456482 255 ntBASIC4.88□□□□□ -1.63
COL3A1P02461 PLS1-AS1-201ENST00000485338 346 ntTSL 3 BASIC4.88□□□□□ -1.63
COL3A1P02461 AC116353.2-201ENST00000505332 712 ntBASIC4.88□□□□□ -1.63
COL3A1P02461 AC133963.2-201ENST00000513686 578 ntBASIC4.88□□□□□ -1.63
COL3A1P02461 Y_RNA.695-201ENST00000516715 107 ntBASIC4.88□□□□□ -1.63
COL3A1P02461 AP006245.1-201ENST00000522549 120 ntBASIC4.88□□□□□ -1.63
COL3A1P02461 OR4R3P-201ENST00000525084 838 ntBASIC4.88□□□□□ -1.63
COL3A1P02461 LINC02378-201ENST00000540399 1003 ntTSL 5 BASIC4.88□□□□□ -1.63
COL3A1P02461 AC245505.1-201ENST00000556398 224 ntBASIC4.88□□□□□ -1.63
COL3A1P02461 AP001269.3-201ENST00000588718 329 ntBASIC4.88□□□□□ -1.63
COL3A1P02461 NEAT1-205ENST00000616315 483 ntTSL 2 BASIC4.88□□□□□ -1.63
COL3A1P02461 AC243756.2-201ENST00000618406 463 ntBASIC4.88□□□□□ -1.63
COL3A1P02461 AC009878.1-201ENST00000621819 340 ntBASIC4.88□□□□□ -1.63
COL3A1P02461 RBM12B-AS1-201ENST00000623283 653 ntBASIC4.88□□□□□ -1.63
COL3A1P02461 OR1S1-201ENST00000624470 978 ntBASIC4.88□□□□□ -1.63
Retrieved 100 of 98,524 protein–RNA pairs in 94 ms