Protein–RNA interactions for Protein: Q9EPU0

Upf1, Regulator of nonsense transcripts 1, mousemouse

Known RBP Predictions only

Length 1,124 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf1Q9EPU0 Gpr146-202ENSMUST00000053120 1040 ntBASIC18.68■□□□□ 0.58
Upf1Q9EPU0 Sos2-206ENSMUST00000183277 4512 ntAPPRIS ALT2 TSL 5 BASIC18.68■□□□□ 0.58
Upf1Q9EPU0 Tmem51os1-202ENSMUST00000141769 2131 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
Upf1Q9EPU0 Gm15743-202ENSMUST00000182690 1901 ntBASIC18.68■□□□□ 0.58
Upf1Q9EPU0 Gm26728-202ENSMUST00000203423 1333 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
Upf1Q9EPU0 Coq10a-205ENSMUST00000220027 1307 ntAPPRIS ALT2 TSL 5 BASIC18.68■□□□□ 0.58
Upf1Q9EPU0 Tmprss12-201ENSMUST00000096200 1349 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Upf1Q9EPU0 Elac2-203ENSMUST00000108697 2612 ntAPPRIS ALT2 TSL 5 BASIC18.68■□□□□ 0.58
Upf1Q9EPU0 Chd3os-201ENSMUST00000129321 2081 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Upf1Q9EPU0 Gatad1-201ENSMUST00000007559 2545 ntAPPRIS P2 TSL 1 (best) BASIC18.67■□□□□ 0.58
Upf1Q9EPU0 Chst3-203ENSMUST00000167915 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
Upf1Q9EPU0 Slc16a7-205ENSMUST00000210780 2562 ntAPPRIS P1 TSL 5 BASIC18.67■□□□□ 0.58
Upf1Q9EPU0 Fbxo44-202ENSMUST00000105705 1034 ntTSL 2 BASIC18.67■□□□□ 0.58
Upf1Q9EPU0 Romo1-203ENSMUST00000109598 362 ntAPPRIS P1 TSL 5 BASIC18.67■□□□□ 0.58
Upf1Q9EPU0 Ppt2-202ENSMUST00000166040 1139 ntAPPRIS P1 TSL 3 BASIC18.67■□□□□ 0.58
Upf1Q9EPU0 1700055C04Rik-201ENSMUST00000176450 355 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
Upf1Q9EPU0 Gm26771-201ENSMUST00000180472 1082 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
Upf1Q9EPU0 Gm27989-201ENSMUST00000184721 107 ntBASIC18.67■□□□□ 0.58
Upf1Q9EPU0 Gm37933-201ENSMUST00000193964 981 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
Upf1Q9EPU0 AC151828.1-201ENSMUST00000219552 661 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
Upf1Q9EPU0 Nr1h2-203ENSMUST00000107911 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
Upf1Q9EPU0 Tmem81-202ENSMUST00000188789 1751 ntAPPRIS P1 BASIC18.67■□□□□ 0.58
Upf1Q9EPU0 Cbfb-204ENSMUST00000109395 2709 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
Upf1Q9EPU0 Arfip2-202ENSMUST00000084782 2254 ntAPPRIS P2 TSL 5 BASIC18.67■□□□□ 0.58
Upf1Q9EPU0 Fam155a-206ENSMUST00000208933 1569 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
Upf1Q9EPU0 Fndc4-202ENSMUST00000172435 2333 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Upf1Q9EPU0 Zpbp2-204ENSMUST00000107511 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
Upf1Q9EPU0 Cabp1-201ENSMUST00000031519 1370 ntAPPRIS P3 TSL 1 (best) BASIC18.67■□□□□ 0.58
Upf1Q9EPU0 Tnfrsf25-202ENSMUST00000035275 1603 ntAPPRIS P3 TSL 1 (best) BASIC18.67■□□□□ 0.58
Upf1Q9EPU0 Ola1-201ENSMUST00000028517 2175 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Upf1Q9EPU0 Gm10561-201ENSMUST00000181563 1943 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
Upf1Q9EPU0 Ckb-201ENSMUST00000001304 1472 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Upf1Q9EPU0 Syt3-203ENSMUST00000120262 2096 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
Upf1Q9EPU0 Psmd8-201ENSMUST00000059642 1540 ntAPPRIS P2 TSL 1 (best) BASIC18.66■□□□□ 0.58
Upf1Q9EPU0 Ssx2ip-203ENSMUST00000106151 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
Upf1Q9EPU0 Ruvbl2-201ENSMUST00000107771 1834 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Upf1Q9EPU0 Trav3-1-201ENSMUST00000103569 385 ntAPPRIS P1 BASIC18.66■□□□□ 0.58
Upf1Q9EPU0 Trav3-4-201ENSMUST00000103670 458 ntAPPRIS P1 BASIC18.66■□□□□ 0.58
Upf1Q9EPU0 Dusp3-205ENSMUST00000143177 391 ntTSL 3 BASIC18.66■□□□□ 0.58
Upf1Q9EPU0 Grip1os3-202ENSMUST00000146294 957 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
Upf1Q9EPU0 Nup37-201ENSMUST00000052355 1267 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Upf1Q9EPU0 Nutf2-201ENSMUST00000008594 948 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Upf1Q9EPU0 Ccdc166-202ENSMUST00000183130 1563 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
Upf1Q9EPU0 Sema6d-204ENSMUST00000078621 6372 ntTSL 5 BASIC18.66■□□□□ 0.58
Upf1Q9EPU0 Brsk1-201ENSMUST00000048248 2996 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Upf1Q9EPU0 Kiz-201ENSMUST00000099278 2183 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Upf1Q9EPU0 Phf14-201ENSMUST00000090632 3985 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
Upf1Q9EPU0 Racgap1-213ENSMUST00000171702 3052 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Upf1Q9EPU0 B9d1-201ENSMUST00000102657 817 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Upf1Q9EPU0 Rpl9-202ENSMUST00000118543 1193 ntTSL 2 BASIC18.65■□□□□ 0.58
Upf1Q9EPU0 Lsamp-207ENSMUST00000189229 637 ntTSL 3 BASIC18.65■□□□□ 0.58
Upf1Q9EPU0 Lsamp-210ENSMUST00000191610 1297 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
Upf1Q9EPU0 Gm7730-201ENSMUST00000212486 454 ntBASIC18.65■□□□□ 0.58
Upf1Q9EPU0 Lcmt2-201ENSMUST00000099486 2047 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
Upf1Q9EPU0 Best4-ps-201ENSMUST00000129783 1380 ntBASIC18.65■□□□□ 0.58
Upf1Q9EPU0 Mef2d-202ENSMUST00000107558 1767 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Upf1Q9EPU0 Nrip2-202ENSMUST00000120405 1468 ntTSL 2 BASIC18.65■□□□□ 0.58
Upf1Q9EPU0 Kctd9-201ENSMUST00000078053 3157 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
Upf1Q9EPU0 Golga7b-202ENSMUST00000122375 2836 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
Upf1Q9EPU0 Pdcd7-201ENSMUST00000048184 2419 ntAPPRIS P2 TSL 1 (best) BASIC18.64■□□□□ 0.58
Upf1Q9EPU0 Gstz1-205ENSMUST00000222885 1571 ntTSL 1 (best) BASIC18.64■□□□□ 0.58
Upf1Q9EPU0 Nudt18-203ENSMUST00000228768 1578 ntBASIC18.64■□□□□ 0.58
Upf1Q9EPU0 Acbd4-201ENSMUST00000024492 2075 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.57
Upf1Q9EPU0 Mettl27-205ENSMUST00000111221 1796 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
Upf1Q9EPU0 Acaa1a-201ENSMUST00000039784 1762 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Upf1Q9EPU0 Cryba4-202ENSMUST00000112383 754 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
Upf1Q9EPU0 Wdr38-202ENSMUST00000112872 1194 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Upf1Q9EPU0 Rpl39-201ENSMUST00000115231 612 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Upf1Q9EPU0 Zglp1-201ENSMUST00000115494 1010 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Upf1Q9EPU0 Mir7684-201ENSMUST00000183858 60 ntBASIC18.64■□□□□ 0.57
Upf1Q9EPU0 Mir7085-201ENSMUST00000184353 66 ntBASIC18.64■□□□□ 0.57
Upf1Q9EPU0 Slc10a7-204ENSMUST00000209992 939 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
Upf1Q9EPU0 Vsig2-204ENSMUST00000215271 891 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
Upf1Q9EPU0 Rps10-201ENSMUST00000025052 519 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
Upf1Q9EPU0 Rpl8-201ENSMUST00000004072 862 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Upf1Q9EPU0 Ifng-201ENSMUST00000068592 1208 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Upf1Q9EPU0 Map3k21-201ENSMUST00000034316 5693 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Upf1Q9EPU0 Itfg2-206ENSMUST00000203374 1394 ntAPPRIS ALT2 TSL 5 BASIC18.64■□□□□ 0.57
Upf1Q9EPU0 Gfi1-203ENSMUST00000159164 2648 ntAPPRIS P3 TSL 1 (best) BASIC18.64■□□□□ 0.57
Upf1Q9EPU0 Fam133b-201ENSMUST00000115527 1491 ntAPPRIS P2 TSL 1 (best) BASIC18.64■□□□□ 0.57
Upf1Q9EPU0 Hnrnph3-201ENSMUST00000020263 2213 ntAPPRIS P3 TSL 5 BASIC18.64■□□□□ 0.57
Upf1Q9EPU0 Tifa-201ENSMUST00000054483 2245 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Upf1Q9EPU0 BC021767-201ENSMUST00000126387 1716 ntBASIC18.63■□□□□ 0.57
Upf1Q9EPU0 Sept10-203ENSMUST00000220156 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
Upf1Q9EPU0 Tmem132b-201ENSMUST00000031446 7995 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
Upf1Q9EPU0 Gm11453-201ENSMUST00000117318 1007 ntBASIC18.63■□□□□ 0.57
Upf1Q9EPU0 Rpl34-203ENSMUST00000133802 711 ntTSL 2 BASIC18.63■□□□□ 0.57
Upf1Q9EPU0 Ift27-201ENSMUST00000016781 1012 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Upf1Q9EPU0 Nab2-202ENSMUST00000099157 2311 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
Upf1Q9EPU0 Chp2-201ENSMUST00000033152 1456 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Upf1Q9EPU0 Cdk9-202ENSMUST00000120105 1565 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
Upf1Q9EPU0 Cstf2-202ENSMUST00000113286 2717 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
Upf1Q9EPU0 Fam170b-201ENSMUST00000104926 1694 ntAPPRIS P1 TSL 2 BASIC18.63■□□□□ 0.57
Upf1Q9EPU0 Gm11185-201ENSMUST00000117732 1007 ntBASIC18.62■□□□□ 0.57
Upf1Q9EPU0 Ffar3-202ENSMUST00000185748 1234 ntAPPRIS P1 BASIC18.62■□□□□ 0.57
Upf1Q9EPU0 AC149294.4-201ENSMUST00000227870 882 ntBASIC18.62■□□□□ 0.57
Upf1Q9EPU0 Ppt1-202ENSMUST00000097902 1191 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
Upf1Q9EPU0 Ccdc106-202ENSMUST00000108571 1318 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
Upf1Q9EPU0 Myog-201ENSMUST00000027730 1495 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Upf1Q9EPU0 Mvb12b-201ENSMUST00000041555 4998 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Retrieved 100 of 76,532 protein–RNA pairs in 26.1 ms