Protein–RNA interactions for Protein: Q8CFK2

Brf1, Transcription factor IIIB 90 kDa subunit, mousemouse

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Brf1Q8CFK2 Brpf1-203ENSMUST00000113121 4603 ntAPPRIS ALT2 TSL 5 BASIC19.88■□□□□ 0.77
Brf1Q8CFK2 Clasrp-201ENSMUST00000086041 2180 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Brf1Q8CFK2 Jam2-201ENSMUST00000098407 1998 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
Brf1Q8CFK2 Col11a2-203ENSMUST00000114255 5722 ntAPPRIS ALT2 TSL 5 BASIC19.88■□□□□ 0.77
Brf1Q8CFK2 Anks1b-219ENSMUST00000182600 1697 ntTSL 5 BASIC19.88■□□□□ 0.77
Brf1Q8CFK2 Bud23-202ENSMUST00000085984 1516 ntAPPRIS P2 TSL 1 (best) BASIC19.88■□□□□ 0.77
Brf1Q8CFK2 Hoxa10-201ENSMUST00000121043 1436 ntAPPRIS P1 TSL 2 BASIC19.88■□□□□ 0.77
Brf1Q8CFK2 Miga1-205ENSMUST00000199397 2842 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
Brf1Q8CFK2 Lyzl4-202ENSMUST00000120918 959 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Brf1Q8CFK2 Gm5577-203ENSMUST00000153372 815 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
Brf1Q8CFK2 Gfod2-203ENSMUST00000155038 951 ntTSL 2 BASIC19.88■□□□□ 0.77
Brf1Q8CFK2 D030044L04Rik-201ENSMUST00000204220 1291 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
Brf1Q8CFK2 Pagr1a-203ENSMUST00000206416 558 ntTSL 3 BASIC19.88■□□□□ 0.77
Brf1Q8CFK2 Ewsr1-204ENSMUST00000093365 1290 ntTSL 5 BASIC19.88■□□□□ 0.77
Brf1Q8CFK2 Nptx2-201ENSMUST00000071782 2536 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Brf1Q8CFK2 Rasgrp2-201ENSMUST00000035716 2219 ntAPPRIS P1 TSL 2 BASIC19.88■□□□□ 0.77
Brf1Q8CFK2 Kcnn2-208ENSMUST00000211323 2046 ntAPPRIS P2 TSL 1 (best) BASIC19.88■□□□□ 0.77
Brf1Q8CFK2 Klhdc10-201ENSMUST00000068240 3951 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
Brf1Q8CFK2 Ebf1-203ENSMUST00000109268 2864 ntAPPRIS ALT1 TSL 5 BASIC19.88■□□□□ 0.77
Brf1Q8CFK2 Coq6-201ENSMUST00000021661 1602 ntAPPRIS P2 TSL 1 (best) BASIC19.87■□□□□ 0.77
Brf1Q8CFK2 Homez-202ENSMUST00000142283 4713 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Brf1Q8CFK2 Gm15442-201ENSMUST00000117905 1527 ntBASIC19.87■□□□□ 0.77
Brf1Q8CFK2 Zkscan4-202ENSMUST00000225845 1506 ntBASIC19.87■□□□□ 0.77
Brf1Q8CFK2 Il6st-208ENSMUST00000184311 2985 ntAPPRIS P2 TSL 5 BASIC19.87■□□□□ 0.77
Brf1Q8CFK2 Crocc-203ENSMUST00000102491 6582 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Brf1Q8CFK2 Snrpd2-201ENSMUST00000049294 1420 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Brf1Q8CFK2 H2-Q10-202ENSMUST00000174525 1991 ntAPPRIS P1 TSL 5 BASIC19.87■□□□□ 0.77
Brf1Q8CFK2 AA414768-201ENSMUST00000121924 1257 ntBASIC19.87■□□□□ 0.77
Brf1Q8CFK2 Zfp629-206ENSMUST00000132524 215 ntTSL 5 BASIC19.87■□□□□ 0.77
Brf1Q8CFK2 Gm19553-201ENSMUST00000175723 494 ntTSL 5 BASIC19.87■□□□□ 0.77
Brf1Q8CFK2 Fam213b-201ENSMUST00000030935 883 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Brf1Q8CFK2 Rplp2-201ENSMUST00000084434 964 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Brf1Q8CFK2 Abcc5-203ENSMUST00000096199 1136 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
Brf1Q8CFK2 Zfp367-202ENSMUST00000117241 2753 ntAPPRIS ALT2 TSL 1 (best) BASIC19.87■□□□□ 0.77
Brf1Q8CFK2 Mink1-202ENSMUST00000072873 4610 ntAPPRIS ALT2 TSL 5 BASIC19.87■□□□□ 0.77
Brf1Q8CFK2 Snx8-204ENSMUST00000196130 2547 ntAPPRIS ALT2 TSL 1 (best) BASIC19.86■□□□□ 0.77
Brf1Q8CFK2 Gpr137b-201ENSMUST00000021738 2971 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Brf1Q8CFK2 D16Ertd472e-203ENSMUST00000114220 2453 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Brf1Q8CFK2 Casp6-201ENSMUST00000029626 1456 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Brf1Q8CFK2 Nhs-201ENSMUST00000081569 4881 ntAPPRIS P3 TSL 1 (best) BASIC19.86■□□□□ 0.77
Brf1Q8CFK2 Slc39a1-201ENSMUST00000015467 2364 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Brf1Q8CFK2 Idh1-201ENSMUST00000097709 2302 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Brf1Q8CFK2 Gm19345-201ENSMUST00000172815 993 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Brf1Q8CFK2 Rab28-205ENSMUST00000202913 863 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
Brf1Q8CFK2 Ankrd40-201ENSMUST00000021227 1215 ntAPPRIS ALT2 TSL 1 (best) BASIC19.86■□□□□ 0.77
Brf1Q8CFK2 Mrpl36-203ENSMUST00000222030 680 ntAPPRIS P1 TSL 3 BASIC19.86■□□□□ 0.77
Brf1Q8CFK2 Il17a-201ENSMUST00000027061 1171 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Brf1Q8CFK2 Rpl21-202ENSMUST00000075453 899 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Brf1Q8CFK2 Ets1-201ENSMUST00000034534 5080 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Brf1Q8CFK2 Evx1-201ENSMUST00000031787 2877 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Brf1Q8CFK2 H2-K1-205ENSMUST00000172912 1570 ntAPPRIS ALT2 TSL 1 (best) BASIC19.86■□□□□ 0.77
Brf1Q8CFK2 Gpd1-203ENSMUST00000162194 1515 ntTSL 5 BASIC19.86■□□□□ 0.77
Brf1Q8CFK2 Fam46b-201ENSMUST00000051676 2287 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Brf1Q8CFK2 Arhgap39-202ENSMUST00000077821 4494 ntAPPRIS P3 TSL 1 (best) BASIC19.86■□□□□ 0.77
Brf1Q8CFK2 A230072E10Rik-203ENSMUST00000175942 2940 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
Brf1Q8CFK2 Il11ra1-204ENSMUST00000108042 1768 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Brf1Q8CFK2 Wrb-201ENSMUST00000023913 2495 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Brf1Q8CFK2 Mcoln2-202ENSMUST00000098524 2492 ntAPPRIS ALT2 TSL 1 (best) BASIC19.85■□□□□ 0.77
Brf1Q8CFK2 Fancg-201ENSMUST00000030165 2771 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Brf1Q8CFK2 Kat2a-202ENSMUST00000103118 3046 ntAPPRIS P4 TSL 1 (best) BASIC19.85■□□□□ 0.77
Brf1Q8CFK2 Stxbp5l-202ENSMUST00000114775 1691 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
Brf1Q8CFK2 Acsl3-205ENSMUST00000142704 2976 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Brf1Q8CFK2 Rgp1-203ENSMUST00000117140 1635 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
Brf1Q8CFK2 Gm6623-201ENSMUST00000173570 544 ntBASIC19.85■□□□□ 0.77
Brf1Q8CFK2 Tppp3-202ENSMUST00000176419 719 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Brf1Q8CFK2 A430033K04Rik-204ENSMUST00000200521 1110 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
Brf1Q8CFK2 A430033K04Rik-201ENSMUST00000032590 1109 ntTSL 5 BASIC19.85■□□□□ 0.77
Brf1Q8CFK2 Raxos1-201ENSMUST00000181100 2547 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
Brf1Q8CFK2 Plekha7-210ENSMUST00000182834 5257 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
Brf1Q8CFK2 Adss-201ENSMUST00000016105 2771 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Brf1Q8CFK2 Capn1-202ENSMUST00000164843 3048 ntAPPRIS P1 TSL 5 BASIC19.85■□□□□ 0.77
Brf1Q8CFK2 Sfrp1-201ENSMUST00000033952 4372 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Brf1Q8CFK2 Fbxl12os-202ENSMUST00000136376 2349 ntTSL 2 BASIC19.85■□□□□ 0.77
Brf1Q8CFK2 Sept11-205ENSMUST00000201700 3478 ntAPPRIS ALT1 TSL 2 BASIC19.85■□□□□ 0.77
Brf1Q8CFK2 Atf4-201ENSMUST00000109605 1724 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Brf1Q8CFK2 Cdc25a-201ENSMUST00000094324 3632 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Brf1Q8CFK2 Coro2a-202ENSMUST00000107756 4154 ntAPPRIS P3 TSL 1 (best) BASIC19.84■□□□□ 0.77
Brf1Q8CFK2 Mepce-201ENSMUST00000031740 3128 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Brf1Q8CFK2 Eif1b-201ENSMUST00000007139 1035 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Brf1Q8CFK2 Taar2-201ENSMUST00000079134 1020 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Brf1Q8CFK2 Olah-203ENSMUST00000194918 1764 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Brf1Q8CFK2 Fbrsl1-201ENSMUST00000056124 2700 ntTSL 2 BASIC19.84■□□□□ 0.77
Brf1Q8CFK2 Ccdc30-201ENSMUST00000044781 1464 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
Brf1Q8CFK2 Guf1-202ENSMUST00000087228 3433 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Brf1Q8CFK2 Hexb-201ENSMUST00000022169 1905 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Brf1Q8CFK2 Nox4-202ENSMUST00000068829 1861 ntAPPRIS ALT2 TSL 1 (best) BASIC19.84■□□□□ 0.77
Brf1Q8CFK2 Adam33-201ENSMUST00000052104 2795 ntAPPRIS ALT2 TSL 1 (best) BASIC19.83■□□□□ 0.77
Brf1Q8CFK2 Gm20628-201ENSMUST00000177363 3215 ntBASIC19.83■□□□□ 0.77
Brf1Q8CFK2 Nfe2l3-201ENSMUST00000005103 2544 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
Brf1Q8CFK2 Capn10-201ENSMUST00000027488 2902 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
Brf1Q8CFK2 Cops7b-201ENSMUST00000027446 2231 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
Brf1Q8CFK2 Susd1-201ENSMUST00000040166 3295 ntAPPRIS P2 TSL 1 (best) BASIC19.83■□□□□ 0.77
Brf1Q8CFK2 Mzf1-202ENSMUST00000182087 2197 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
Brf1Q8CFK2 Vim-201ENSMUST00000028062 2193 ntAPPRIS P2 TSL 1 (best) BASIC19.83■□□□□ 0.77
Brf1Q8CFK2 Wdr86-201ENSMUST00000068693 2364 ntAPPRIS P1 TSL 2 BASIC19.83■□□□□ 0.77
Brf1Q8CFK2 Hist1h2bj-201ENSMUST00000110452 463 ntAPPRIS P1 BASIC19.83■□□□□ 0.77
Brf1Q8CFK2 Hist1h2bp-202ENSMUST00000110473 621 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
Brf1Q8CFK2 Eif4e2-205ENSMUST00000113232 1125 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
Brf1Q8CFK2 Flt3l-206ENSMUST00000210197 834 ntAPPRIS ALT2 TSL 5 BASIC19.83■□□□□ 0.77
Brf1Q8CFK2 AC159205.3-201ENSMUST00000224614 874 ntBASIC19.83■□□□□ 0.77
Retrieved 100 of 76,532 protein–RNA pairs in 35.5 ms