Protein–RNA interactions for Protein: Q8CEC0

Nup88, Nuclear pore complex protein Nup88, mousemouse

Known RBP Predictions only

Length 753 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nup88Q8CEC0 Abhd16a-201ENSMUST00000007251 1945 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Nup88Q8CEC0 Crtac1-201ENSMUST00000048630 2616 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Nup88Q8CEC0 Fam71e1-202ENSMUST00000205359 1307 ntAPPRIS ALT2 TSL 2 BASIC19.42■□□□□ 0.7
Nup88Q8CEC0 Rgl1-202ENSMUST00000111857 3037 ntTSL 5 BASIC19.42■□□□□ 0.7
Nup88Q8CEC0 Gm16867-201ENSMUST00000179116 3084 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Nup88Q8CEC0 Sufu-202ENSMUST00000111867 1747 ntAPPRIS ALT1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Nup88Q8CEC0 Rgs3-203ENSMUST00000098031 2072 ntAPPRIS ALT1 TSL 5 BASIC19.42■□□□□ 0.7
Nup88Q8CEC0 Ivns1abp-203ENSMUST00000111887 2783 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
Nup88Q8CEC0 Mcoln2-202ENSMUST00000098524 2492 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
Nup88Q8CEC0 Hipk2-206ENSMUST00000161779 7684 ntAPPRIS P3 TSL 1 (best) BASIC19.41■□□□□ 0.7
Nup88Q8CEC0 Arid3b-202ENSMUST00000098686 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
Nup88Q8CEC0 Chst2-201ENSMUST00000036267 7328 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Nup88Q8CEC0 A230103J11Rik-202ENSMUST00000156084 2086 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
Nup88Q8CEC0 Slit1-201ENSMUST00000025993 5045 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Nup88Q8CEC0 Lrrtm1-203ENSMUST00000161677 2518 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Nup88Q8CEC0 Gm9013-201ENSMUST00000132939 882 ntBASIC19.41■□□□□ 0.7
Nup88Q8CEC0 Kiss1r-202ENSMUST00000219745 979 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
Nup88Q8CEC0 Nthl1-201ENSMUST00000047611 1080 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Nup88Q8CEC0 Pym1-201ENSMUST00000065210 1156 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
Nup88Q8CEC0 Pde8b-202ENSMUST00000067082 2598 ntAPPRIS ALT2 TSL 5 BASIC19.41■□□□□ 0.7
Nup88Q8CEC0 Klf9-201ENSMUST00000036884 3263 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Nup88Q8CEC0 Comp-201ENSMUST00000003659 2416 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Nup88Q8CEC0 Gm11748-201ENSMUST00000153825 1498 ntTSL 2 BASIC19.41■□□□□ 0.7
Nup88Q8CEC0 Pigs-201ENSMUST00000048073 2501 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Nup88Q8CEC0 Acbd6-201ENSMUST00000035560 5592 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Nup88Q8CEC0 Psmd8-203ENSMUST00000186182 1512 ntAPPRIS P2 TSL 1 (best) BASIC19.41■□□□□ 0.7
Nup88Q8CEC0 Atxn7l3-202ENSMUST00000107132 3706 ntAPPRIS P4 TSL 5 BASIC19.4■□□□□ 0.7
Nup88Q8CEC0 Vim-201ENSMUST00000028062 2193 ntAPPRIS P2 TSL 1 (best) BASIC19.4■□□□□ 0.7
Nup88Q8CEC0 Cops7b-201ENSMUST00000027446 2231 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Nup88Q8CEC0 Gm14859-201ENSMUST00000117752 357 ntBASIC19.4■□□□□ 0.7
Nup88Q8CEC0 Gm13420-201ENSMUST00000129574 1091 ntAPPRIS P1 TSL 5 BASIC19.4■□□□□ 0.7
Nup88Q8CEC0 Gm38282-201ENSMUST00000192751 695 ntTSL 5 BASIC19.4■□□□□ 0.7
Nup88Q8CEC0 Pcyox1-206ENSMUST00000204116 546 ntTSL 5 BASIC19.4■□□□□ 0.7
Nup88Q8CEC0 Ttc32-203ENSMUST00000219488 768 ntTSL 3 BASIC19.4■□□□□ 0.7
Nup88Q8CEC0 Coq7-201ENSMUST00000032887 914 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Nup88Q8CEC0 Mrs2-201ENSMUST00000021772 7035 ntAPPRIS P1 TSL 5 BASIC19.4■□□□□ 0.7
Nup88Q8CEC0 Sf1-202ENSMUST00000113487 2649 ntAPPRIS ALT1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Nup88Q8CEC0 Fmnl3-203ENSMUST00000120633 4290 ntAPPRIS ALT2 TSL 5 BASIC19.4■□□□□ 0.7
Nup88Q8CEC0 Mzf1-202ENSMUST00000182087 2197 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
Nup88Q8CEC0 Fscn1-207ENSMUST00000198017 2157 ntTSL 5 BASIC19.4■□□□□ 0.7
Nup88Q8CEC0 Tatdn2-202ENSMUST00000113022 2416 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
Nup88Q8CEC0 Epm2a-201ENSMUST00000069106 3287 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Nup88Q8CEC0 AL590614.2-201ENSMUST00000225374 1937 ntBASIC19.39■□□□□ 0.7
Nup88Q8CEC0 Slc38a10-202ENSMUST00000053692 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.7
Nup88Q8CEC0 Slc13a3-202ENSMUST00000109279 3131 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
Nup88Q8CEC0 Ccnd3-202ENSMUST00000171031 2113 ntAPPRIS P1 TSL 5 BASIC19.39■□□□□ 0.69
Nup88Q8CEC0 Rasip1-201ENSMUST00000057927 3202 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Nup88Q8CEC0 Fgfr1-214ENSMUST00000178276 4741 ntTSL 5 BASIC19.39■□□□□ 0.69
Nup88Q8CEC0 Med7-209ENSMUST00000170928 2390 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Nup88Q8CEC0 Ncoa1-201ENSMUST00000085814 7329 ntAPPRIS P2 TSL 1 (best) BASIC19.39■□□□□ 0.69
Nup88Q8CEC0 Gm9103-201ENSMUST00000119371 405 ntBASIC19.39■□□□□ 0.69
Nup88Q8CEC0 Znhit1-202ENSMUST00000085941 740 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Nup88Q8CEC0 Gm11696-201ENSMUST00000070956 2765 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
Nup88Q8CEC0 Ermp1-203ENSMUST00000159692 7058 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Nup88Q8CEC0 Rwdd2b-201ENSMUST00000039101 2009 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Nup88Q8CEC0 Aim2-204ENSMUST00000166137 2079 ntAPPRIS P1 TSL 5 BASIC19.39■□□□□ 0.69
Nup88Q8CEC0 Luc7l2-208ENSMUST00000161538 4253 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
Nup88Q8CEC0 Neu1-201ENSMUST00000007253 2474 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Nup88Q8CEC0 Kcnq2-205ENSMUST00000103048 2827 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
Nup88Q8CEC0 Xpo6-213ENSMUST00000168189 4552 ntAPPRIS ALT1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Nup88Q8CEC0 Dync1li2-201ENSMUST00000041769 4627 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Nup88Q8CEC0 Nhsl1-209ENSMUST00000207038 4854 ntAPPRIS ALT2 TSL 5 BASIC19.38■□□□□ 0.69
Nup88Q8CEC0 Ankrd17-202ENSMUST00000081914 8057 ntAPPRIS ALT2 TSL 5 BASIC19.38■□□□□ 0.69
Nup88Q8CEC0 Pou2f2-202ENSMUST00000108413 1599 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
Nup88Q8CEC0 Dbndd2-204ENSMUST00000109350 1055 ntAPPRIS P1 TSL 2 BASIC19.38■□□□□ 0.69
Nup88Q8CEC0 Kcnh2-202ENSMUST00000115098 3193 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
Nup88Q8CEC0 Rab3d-202ENSMUST00000119055 694 ntTSL 3 BASIC19.38■□□□□ 0.69
Nup88Q8CEC0 Gm4425-201ENSMUST00000172838 2857 ntTSL 2 BASIC19.38■□□□□ 0.69
Nup88Q8CEC0 Gm27741-201ENSMUST00000185060 237 ntBASIC19.38■□□□□ 0.69
Nup88Q8CEC0 Gm17949-201ENSMUST00000210548 1179 ntAPPRIS P1 TSL 5 BASIC19.38■□□□□ 0.69
Nup88Q8CEC0 Cygb-201ENSMUST00000021166 2331 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Nup88Q8CEC0 Zdhhc1-203ENSMUST00000212303 2056 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Nup88Q8CEC0 Slc35d2-204ENSMUST00000222168 472 ntTSL 3 BASIC19.38■□□□□ 0.69
Nup88Q8CEC0 AC069562.2-201ENSMUST00000224644 2146 ntBASIC19.38■□□□□ 0.69
Nup88Q8CEC0 Wnt10b-207ENSMUST00000228594 1510 ntAPPRIS P1 BASIC19.38■□□□□ 0.69
Nup88Q8CEC0 Slc15a3-201ENSMUST00000025646 2345 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Nup88Q8CEC0 Mrps6-201ENSMUST00000047429 846 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Nup88Q8CEC0 Cltb-201ENSMUST00000049575 1004 ntAPPRIS ALT2 TSL 1 (best) BASIC19.38■□□□□ 0.69
Nup88Q8CEC0 Gpr6-201ENSMUST00000061796 1786 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Nup88Q8CEC0 Napa-201ENSMUST00000006181 2517 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Nup88Q8CEC0 Olfr317-201ENSMUST00000075607 1128 ntAPPRIS P1 BASIC19.38■□□□□ 0.69
Nup88Q8CEC0 Stk33-201ENSMUST00000090414 2221 ntAPPRIS P1 TSL 5 BASIC19.38■□□□□ 0.69
Nup88Q8CEC0 Elf2-202ENSMUST00000091144 2366 ntTSL 5 BASIC19.38■□□□□ 0.69
Nup88Q8CEC0 Pdss2-201ENSMUST00000095725 2127 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Nup88Q8CEC0 Snx30-201ENSMUST00000030080 7314 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Nup88Q8CEC0 Acvr2a-201ENSMUST00000063886 5686 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Nup88Q8CEC0 Capn10-201ENSMUST00000027488 2902 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Nup88Q8CEC0 Gm13327-201ENSMUST00000133391 2741 ntTSL 5 BASIC19.38■□□□□ 0.69
Nup88Q8CEC0 Rgs9-201ENSMUST00000020920 2434 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
Nup88Q8CEC0 Aptx-203ENSMUST00000108103 2391 ntAPPRIS ALT2 TSL 5 BASIC19.37■□□□□ 0.69
Nup88Q8CEC0 Ubr3-202ENSMUST00000112251 8081 ntAPPRIS ALT2 TSL 5 BASIC19.37■□□□□ 0.69
Nup88Q8CEC0 Pcsk5-202ENSMUST00000050715 5783 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
Nup88Q8CEC0 Trim45-202ENSMUST00000094048 1815 ntTSL 5 BASIC19.37■□□□□ 0.69
Nup88Q8CEC0 Rexo1-201ENSMUST00000057910 5250 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Nup88Q8CEC0 Tulp1-202ENSMUST00000114794 1738 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
Nup88Q8CEC0 Sprn-201ENSMUST00000059241 3374 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Nup88Q8CEC0 Tnfrsf25-202ENSMUST00000035275 1603 ntAPPRIS P3 TSL 1 (best) BASIC19.37■□□□□ 0.69
Nup88Q8CEC0 Mmp23-201ENSMUST00000030937 1434 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Nup88Q8CEC0 Tspyl2-201ENSMUST00000044509 2696 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Nup88Q8CEC0 Umad1-202ENSMUST00000159335 2615 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
Retrieved 100 of 76,532 protein–RNA pairs in 146.5 ms