Protein–RNA interactions for Protein: Q8BY87

Usp47, Ubiquitin carboxyl-terminal hydrolase 47, mousemouse

Predictions only

Length 1,376 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp47Q8BY87 Rtn1-201ENSMUST00000021497 1544 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
Usp47Q8BY87 Ubb-201ENSMUST00000019649 1499 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
Usp47Q8BY87 Atp2c1-201ENSMUST00000038118 4876 ntAPPRIS P3 TSL 1 (best) BASIC23.16■■□□□ 1.3
Usp47Q8BY87 Impdh1-202ENSMUST00000159124 2600 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
Usp47Q8BY87 Hhipl1-201ENSMUST00000021685 5174 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
Usp47Q8BY87 Hnrnpa1l2-ps-201ENSMUST00000129154 964 ntBASIC23.15■■□□□ 1.3
Usp47Q8BY87 Gm1818-201ENSMUST00000169406 1184 ntBASIC23.15■■□□□ 1.3
Usp47Q8BY87 Samd13-205ENSMUST00000197989 591 ntTSL 5 BASIC23.15■■□□□ 1.3
Usp47Q8BY87 Naprt-201ENSMUST00000023237 1890 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
Usp47Q8BY87 Fam76a-202ENSMUST00000097856 1863 ntTSL 1 (best) BASIC23.15■■□□□ 1.3
Usp47Q8BY87 Sirt6-202ENSMUST00000119324 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC23.15■■□□□ 1.3
Usp47Q8BY87 Fam72a-201ENSMUST00000068613 2191 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
Usp47Q8BY87 Fiz1-202ENSMUST00000165320 2653 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
Usp47Q8BY87 Akap8l-201ENSMUST00000050214 2075 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
Usp47Q8BY87 Rfesd-203ENSMUST00000179078 1436 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
Usp47Q8BY87 Myo1b-203ENSMUST00000114537 4618 ntTSL 5 BASIC23.15■■□□□ 1.3
Usp47Q8BY87 Arpc1b-211ENSMUST00000196111 1394 ntAPPRIS ALT1 TSL 1 (best) BASIC23.15■■□□□ 1.3
Usp47Q8BY87 Pth1r-204ENSMUST00000198865 2201 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
Usp47Q8BY87 Krt6b-201ENSMUST00000023786 2226 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
Usp47Q8BY87 Lrrc47-205ENSMUST00000169622 3468 ntAPPRIS ALT2 TSL 1 (best) BASIC23.15■■□□□ 1.3
Usp47Q8BY87 Dupd1-201ENSMUST00000073870 1138 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.3
Usp47Q8BY87 Methig1-201ENSMUST00000075675 1029 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.3
Usp47Q8BY87 Trpc4ap-201ENSMUST00000041059 3204 ntAPPRIS ALT2 TSL 1 (best) BASIC23.14■■□□□ 1.3
Usp47Q8BY87 Klhdc8b-201ENSMUST00000035232 1897 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.3
Usp47Q8BY87 Uso1-204ENSMUST00000202155 3707 ntAPPRIS ALT2 TSL 1 (best) BASIC23.14■■□□□ 1.3
Usp47Q8BY87 Mtx2-201ENSMUST00000028511 2950 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.3
Usp47Q8BY87 Zbtb48-201ENSMUST00000066715 2218 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.29
Usp47Q8BY87 Snx11-202ENSMUST00000107661 2197 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.29
Usp47Q8BY87 Dnase2a-202ENSMUST00000109744 1958 ntAPPRIS ALT2 TSL 1 (best) BASIC23.14■■□□□ 1.29
Usp47Q8BY87 Pofut2-201ENSMUST00000020493 2290 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.29
Usp47Q8BY87 Bud23-201ENSMUST00000071677 1607 ntAPPRIS ALT2 TSL 1 (best) BASIC23.14■■□□□ 1.29
Usp47Q8BY87 Gm44264-201ENSMUST00000203049 742 ntTSL 3 BASIC23.14■■□□□ 1.29
Usp47Q8BY87 Manbal-201ENSMUST00000081202 1107 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.29
Usp47Q8BY87 Inhba-202ENSMUST00000164993 1529 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
Usp47Q8BY87 Irgc1-204ENSMUST00000205776 1835 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
Usp47Q8BY87 Dlgap1-206ENSMUST00000133717 2355 ntAPPRIS ALT2 TSL 5 BASIC23.13■■□□□ 1.29
Usp47Q8BY87 Klhl40-201ENSMUST00000098272 2370 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
Usp47Q8BY87 Il7-203ENSMUST00000192202 2057 ntTSL 1 (best) BASIC23.13■■□□□ 1.29
Usp47Q8BY87 Rragd-203ENSMUST00000098190 5008 ntAPPRIS P1 TSL 2 BASIC23.13■■□□□ 1.29
Usp47Q8BY87 Fiz1-208ENSMUST00000208944 2306 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
Usp47Q8BY87 Dus3l-201ENSMUST00000007747 2303 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
Usp47Q8BY87 Zbtb24-201ENSMUST00000080771 2844 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
Usp47Q8BY87 Cfap20-208ENSMUST00000213086 2544 ntTSL 2 BASIC23.13■■□□□ 1.29
Usp47Q8BY87 Sox12-201ENSMUST00000063332 4169 ntAPPRIS P1 TSL 2 BASIC23.13■■□□□ 1.29
Usp47Q8BY87 Pcmt1-202ENSMUST00000159917 2491 ntAPPRIS P3 TSL 1 (best) BASIC23.13■■□□□ 1.29
Usp47Q8BY87 Mfsd6-205ENSMUST00000156876 4932 ntAPPRIS P4 TSL 5 BASIC23.13■■□□□ 1.29
Usp47Q8BY87 Trim7-201ENSMUST00000046903 2161 ntAPPRIS P1 TSL 5 BASIC23.13■■□□□ 1.29
Usp47Q8BY87 Wscd1-202ENSMUST00000108510 2956 ntAPPRIS P1 TSL 5 BASIC23.13■■□□□ 1.29
Usp47Q8BY87 Rab6a-201ENSMUST00000032946 3214 ntAPPRIS P3 TSL 1 (best) BASIC23.13■■□□□ 1.29
Usp47Q8BY87 Mark3-201ENSMUST00000075281 3321 ntAPPRIS P2 TSL 1 (best) BASIC23.13■■□□□ 1.29
Usp47Q8BY87 Tsacc-202ENSMUST00000107556 584 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
Usp47Q8BY87 Gm12999-201ENSMUST00000124471 485 ntTSL 2 BASIC23.13■■□□□ 1.29
Usp47Q8BY87 Stard3nl-208ENSMUST00000200323 1128 ntTSL 1 (best) BASIC23.13■■□□□ 1.29
Usp47Q8BY87 AC127349.1-201ENSMUST00000224590 266 ntBASIC23.13■■□□□ 1.29
Usp47Q8BY87 Rhoc-201ENSMUST00000002303 1202 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
Usp47Q8BY87 4931422A03Rik-201ENSMUST00000056170 1037 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
Usp47Q8BY87 Gm7461-201ENSMUST00000058918 827 ntBASIC23.13■■□□□ 1.29
Usp47Q8BY87 Vamp8-201ENSMUST00000059983 820 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
Usp47Q8BY87 Cyp2w1-201ENSMUST00000031521 1512 ntAPPRIS P1 TSL 5 BASIC23.13■■□□□ 1.29
Usp47Q8BY87 Relt-201ENSMUST00000008462 2851 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
Usp47Q8BY87 Ankle2-201ENSMUST00000031474 5215 ntAPPRIS ALT2 TSL 1 (best) BASIC23.12■■□□□ 1.29
Usp47Q8BY87 Tmem132b-201ENSMUST00000031446 7995 ntAPPRIS P1 TSL 5 BASIC23.12■■□□□ 1.29
Usp47Q8BY87 Il3ra-203ENSMUST00000224163 2315 ntAPPRIS P2 BASIC23.12■■□□□ 1.29
Usp47Q8BY87 Vkorc1l1-203ENSMUST00000201855 4809 ntTSL 1 (best) BASIC23.12■■□□□ 1.29
Usp47Q8BY87 Slc48a1-201ENSMUST00000117892 2536 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
Usp47Q8BY87 Atat1-214ENSMUST00000149277 1388 ntAPPRIS ALT2 TSL 1 (best) BASIC23.12■■□□□ 1.29
Usp47Q8BY87 Chpt1-203ENSMUST00000117440 4863 ntAPPRIS ALT2 TSL 5 BASIC23.12■■□□□ 1.29
Usp47Q8BY87 Pi4kb-202ENSMUST00000107251 2895 ntTSL 1 (best) BASIC23.12■■□□□ 1.29
Usp47Q8BY87 Plekha4-202ENSMUST00000209517 2577 ntAPPRIS P2 TSL 5 BASIC23.12■■□□□ 1.29
Usp47Q8BY87 Mcl1-201ENSMUST00000037947 3418 ntAPPRIS P2 TSL 1 (best) BASIC23.12■■□□□ 1.29
Usp47Q8BY87 Pih1d1-202ENSMUST00000107811 1072 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
Usp47Q8BY87 Slc19a2-204ENSMUST00000169394 894 ntTSL 5 BASIC23.12■■□□□ 1.29
Usp47Q8BY87 Gm44357-201ENSMUST00000195897 142 ntBASIC23.12■■□□□ 1.29
Usp47Q8BY87 Gm19658-201ENSMUST00000196231 138 ntBASIC23.12■■□□□ 1.29
Usp47Q8BY87 Gm44367-201ENSMUST00000196836 138 ntBASIC23.12■■□□□ 1.29
Usp47Q8BY87 Gm44350-201ENSMUST00000197197 138 ntBASIC23.12■■□□□ 1.29
Usp47Q8BY87 Gm44390-201ENSMUST00000197533 144 ntBASIC23.12■■□□□ 1.29
Usp47Q8BY87 Gm44313-201ENSMUST00000198018 138 ntBASIC23.12■■□□□ 1.29
Usp47Q8BY87 Gm44486-201ENSMUST00000198508 138 ntBASIC23.12■■□□□ 1.29
Usp47Q8BY87 Gm44314-201ENSMUST00000199263 138 ntBASIC23.12■■□□□ 1.29
Usp47Q8BY87 Gm44394-201ENSMUST00000199558 138 ntBASIC23.12■■□□□ 1.29
Usp47Q8BY87 Gm44484-201ENSMUST00000199873 138 ntBASIC23.12■■□□□ 1.29
Usp47Q8BY87 Gm44466-201ENSMUST00000200264 138 ntBASIC23.12■■□□□ 1.29
Usp47Q8BY87 Gm44359-201ENSMUST00000200671 138 ntBASIC23.12■■□□□ 1.29
Usp47Q8BY87 Dcdc2c-201ENSMUST00000020963 1041 ntTSL 5 BASIC23.12■■□□□ 1.29
Usp47Q8BY87 AC171004.1-201ENSMUST00000221723 664 ntTSL 3 BASIC23.12■■□□□ 1.29
Usp47Q8BY87 AC159301.1-201ENSMUST00000225130 1182 ntBASIC23.12■■□□□ 1.29
Usp47Q8BY87 Ppt1-202ENSMUST00000097902 1191 ntTSL 1 (best) BASIC23.12■■□□□ 1.29
Usp47Q8BY87 Agpat3-201ENSMUST00000001240 5980 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
Usp47Q8BY87 Crem-228ENSMUST00000150235 2662 ntAPPRIS P2 TSL 5 BASIC23.12■■□□□ 1.29
Usp47Q8BY87 Ahsa1-201ENSMUST00000021425 1377 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
Usp47Q8BY87 Pard6g-201ENSMUST00000070219 3143 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
Usp47Q8BY87 Dlx3-201ENSMUST00000092768 2607 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
Usp47Q8BY87 Sil1-201ENSMUST00000025215 1695 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
Usp47Q8BY87 Nap1l1-201ENSMUST00000065917 1486 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
Usp47Q8BY87 Entpd4-205ENSMUST00000184314 989 ntTSL 1 (best) BASIC23.11■■□□□ 1.29
Usp47Q8BY87 Gm42456-201ENSMUST00000196840 387 ntTSL 3 BASIC23.11■■□□□ 1.29
Usp47Q8BY87 Prdx6-201ENSMUST00000051925 959 ntTSL 2 BASIC23.11■■□□□ 1.29
Usp47Q8BY87 Entpd4b-201ENSMUST00000064846 989 ntTSL 1 (best) BASIC23.11■■□□□ 1.29
Usp47Q8BY87 Cdkn1a-201ENSMUST00000023829 1910 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
Retrieved 100 of 76,532 protein–RNA pairs in 21.5 ms