Protein–RNA interactions for Protein: Q5SNZ0

Ccdc88a, Girdin, mousemouse

Predictions only

Length 1,873 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc88aQ5SNZ0 Mvk-201ENSMUST00000043760 1660 ntAPPRIS P3 TSL 1 (best) BASIC18.85■□□□□ 0.61
Ccdc88aQ5SNZ0 Sco1-201ENSMUST00000092996 2412 ntAPPRIS P2 TSL 1 (best) BASIC18.85■□□□□ 0.61
Ccdc88aQ5SNZ0 Ak5-201ENSMUST00000045262 3323 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Ccdc88aQ5SNZ0 Htr3a-201ENSMUST00000003826 2082 ntAPPRIS P2 TSL 1 (best) BASIC18.84■□□□□ 0.61
Ccdc88aQ5SNZ0 Gm14261-201ENSMUST00000145105 1429 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
Ccdc88aQ5SNZ0 Mier2-212ENSMUST00000172158 1400 ntTSL 5 BASIC18.84■□□□□ 0.61
Ccdc88aQ5SNZ0 Sox2ot-202ENSMUST00000196058 753 ntTSL 3 BASIC18.84■□□□□ 0.61
Ccdc88aQ5SNZ0 Gm42413-201ENSMUST00000196216 338 ntTSL 5 BASIC18.84■□□□□ 0.61
Ccdc88aQ5SNZ0 Nudt14-203ENSMUST00000221497 355 ntTSL 2 BASIC18.84■□□□□ 0.61
Ccdc88aQ5SNZ0 CT009713.7-201ENSMUST00000224689 571 ntBASIC18.84■□□□□ 0.61
Ccdc88aQ5SNZ0 Anapc15-202ENSMUST00000035395 836 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
Ccdc88aQ5SNZ0 Fbxo33-201ENSMUST00000043204 3688 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Ccdc88aQ5SNZ0 Chrm4-201ENSMUST00000045537 1440 ntAPPRIS P1 BASIC18.84■□□□□ 0.61
Ccdc88aQ5SNZ0 Zbtb46-202ENSMUST00000087409 2577 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
Ccdc88aQ5SNZ0 Cxcl10-202ENSMUST00000118006 1353 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
Ccdc88aQ5SNZ0 E330011M16Rik-201ENSMUST00000193614 1794 ntBASIC18.84■□□□□ 0.61
Ccdc88aQ5SNZ0 Acss2-201ENSMUST00000029135 2931 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Ccdc88aQ5SNZ0 Ivns1abp-203ENSMUST00000111887 2783 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
Ccdc88aQ5SNZ0 Dcdc2c-206ENSMUST00000221349 2209 ntAPPRIS P1 TSL 5 BASIC18.84■□□□□ 0.61
Ccdc88aQ5SNZ0 Mipep-201ENSMUST00000063562 3015 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Ccdc88aQ5SNZ0 Taf3-202ENSMUST00000114906 583 ntTSL 2 BASIC18.84■□□□□ 0.61
Ccdc88aQ5SNZ0 Gm12216-201ENSMUST00000117316 1152 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
Ccdc88aQ5SNZ0 Gm14822-201ENSMUST00000122247 291 ntBASIC18.84■□□□□ 0.61
Ccdc88aQ5SNZ0 Cbr2-201ENSMUST00000026148 1110 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Ccdc88aQ5SNZ0 Lce3f-201ENSMUST00000090863 611 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Ccdc88aQ5SNZ0 Atp2b2-208ENSMUST00000205052 5658 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
Ccdc88aQ5SNZ0 Zswim1-201ENSMUST00000017908 2705 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Ccdc88aQ5SNZ0 Neo1-202ENSMUST00000214547 5414 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.61
Ccdc88aQ5SNZ0 Taf6l-205ENSMUST00000176496 2224 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
Ccdc88aQ5SNZ0 Rnf121-202ENSMUST00000096639 2249 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
Ccdc88aQ5SNZ0 Abcd4-201ENSMUST00000021666 2309 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
Ccdc88aQ5SNZ0 Zkscan3-202ENSMUST00000116433 1421 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
Ccdc88aQ5SNZ0 Fam171a2-201ENSMUST00000049057 3118 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Ccdc88aQ5SNZ0 Ovol2-202ENSMUST00000103171 1547 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.6
Ccdc88aQ5SNZ0 Gm14641-201ENSMUST00000136486 452 ntTSL 3 BASIC18.83■□□□□ 0.6
Ccdc88aQ5SNZ0 Gm24513-201ENSMUST00000174964 138 ntBASIC18.83■□□□□ 0.6
Ccdc88aQ5SNZ0 Npcd-201ENSMUST00000023060 1162 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.6
Ccdc88aQ5SNZ0 Apoa1-201ENSMUST00000034588 1035 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Ccdc88aQ5SNZ0 Pla2g12b-201ENSMUST00000009790 1091 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Ccdc88aQ5SNZ0 Ccnl1-201ENSMUST00000029416 2169 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Ccdc88aQ5SNZ0 Fam46b-201ENSMUST00000051676 2287 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Ccdc88aQ5SNZ0 Prdm8-201ENSMUST00000112959 4553 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Ccdc88aQ5SNZ0 Tmem132b-201ENSMUST00000031446 7995 ntAPPRIS P1 TSL 5 BASIC18.83■□□□□ 0.6
Ccdc88aQ5SNZ0 Vgf-201ENSMUST00000041543 2553 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Ccdc88aQ5SNZ0 Yipf2-204ENSMUST00000213809 1883 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
Ccdc88aQ5SNZ0 Krt6a-201ENSMUST00000023788 2256 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Ccdc88aQ5SNZ0 Gm7862-201ENSMUST00000121461 292 ntBASIC18.82■□□□□ 0.6
Ccdc88aQ5SNZ0 Gm25911-201ENSMUST00000157621 56 ntBASIC18.82■□□□□ 0.6
Ccdc88aQ5SNZ0 Gm42456-201ENSMUST00000196840 387 ntTSL 3 BASIC18.82■□□□□ 0.6
Ccdc88aQ5SNZ0 Gnb3-201ENSMUST00000024206 1846 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Ccdc88aQ5SNZ0 Trip10-205ENSMUST00000224885 2136 ntAPPRIS ALT2 BASIC18.82■□□□□ 0.6
Ccdc88aQ5SNZ0 Gpc3-201ENSMUST00000069360 2216 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Ccdc88aQ5SNZ0 Nfib-204ENSMUST00000107246 3075 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
Ccdc88aQ5SNZ0 Atg4c-201ENSMUST00000030279 3178 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Ccdc88aQ5SNZ0 Sos1-201ENSMUST00000068714 8919 ntAPPRIS P1 TSL 2 BASIC18.82■□□□□ 0.6
Ccdc88aQ5SNZ0 A930017K11Rik-201ENSMUST00000162431 2539 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Ccdc88aQ5SNZ0 Fbxo17-205ENSMUST00000167118 861 ntAPPRIS P1 TSL 5 BASIC18.82■□□□□ 0.6
Ccdc88aQ5SNZ0 Dynlt1b-201ENSMUST00000179569 768 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Ccdc88aQ5SNZ0 Snrpf-201ENSMUST00000020203 861 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Ccdc88aQ5SNZ0 Gnmt-201ENSMUST00000002846 1035 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Ccdc88aQ5SNZ0 Aurkaip1-201ENSMUST00000084097 1159 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Ccdc88aQ5SNZ0 Ahsa1-201ENSMUST00000021425 1377 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Ccdc88aQ5SNZ0 Pcmt1-202ENSMUST00000159917 2491 ntAPPRIS P3 TSL 1 (best) BASIC18.81■□□□□ 0.6
Ccdc88aQ5SNZ0 Zcchc2-202ENSMUST00000119166 6368 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
Ccdc88aQ5SNZ0 Trpc4ap-201ENSMUST00000041059 3204 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
Ccdc88aQ5SNZ0 Slc2a8-201ENSMUST00000028129 2108 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Ccdc88aQ5SNZ0 Purb-201ENSMUST00000179343 8319 ntAPPRIS P1 BASIC18.81■□□□□ 0.6
Ccdc88aQ5SNZ0 Dnajc2-204ENSMUST00000115195 1994 ntTSL 5 BASIC18.81■□□□□ 0.6
Ccdc88aQ5SNZ0 Col23a1-201ENSMUST00000102765 5658 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
Ccdc88aQ5SNZ0 Gm15165-201ENSMUST00000118140 502 ntBASIC18.81■□□□□ 0.6
Ccdc88aQ5SNZ0 Gm15690-201ENSMUST00000128728 432 ntTSL 3 BASIC18.81■□□□□ 0.6
Ccdc88aQ5SNZ0 Ighv1-15-201ENSMUST00000192077 351 ntAPPRIS P1 BASIC18.81■□□□□ 0.6
Ccdc88aQ5SNZ0 Fam159a-201ENSMUST00000053157 593 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
Ccdc88aQ5SNZ0 Pfn3-201ENSMUST00000054146 545 ntAPPRIS P1 BASIC18.81■□□□□ 0.6
Ccdc88aQ5SNZ0 Agpat1-201ENSMUST00000037489 2190 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Ccdc88aQ5SNZ0 Cdc27-202ENSMUST00000106961 1863 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
Ccdc88aQ5SNZ0 Rbm3-206ENSMUST00000115621 1338 ntAPPRIS ALT1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Ccdc88aQ5SNZ0 AC154527.4-201ENSMUST00000224364 1667 ntBASIC18.8■□□□□ 0.6
Ccdc88aQ5SNZ0 Grk3-203ENSMUST00000197776 1570 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
Ccdc88aQ5SNZ0 Gna11-201ENSMUST00000043604 3414 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Ccdc88aQ5SNZ0 Snx8-204ENSMUST00000196130 2547 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
Ccdc88aQ5SNZ0 Dscr3-201ENSMUST00000023615 2547 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Ccdc88aQ5SNZ0 Zscan10-204ENSMUST00000118369 1006 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
Ccdc88aQ5SNZ0 Gm14140-201ENSMUST00000119999 995 ntBASIC18.8■□□□□ 0.6
Ccdc88aQ5SNZ0 Arid2-202ENSMUST00000134985 809 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
Ccdc88aQ5SNZ0 9130024F11Rik-204ENSMUST00000187927 517 ntTSL 5 BASIC18.8■□□□□ 0.6
Ccdc88aQ5SNZ0 Gm43935-201ENSMUST00000203569 1050 ntBASIC18.8■□□□□ 0.6
Ccdc88aQ5SNZ0 Icam4-202ENSMUST00000215077 1028 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
Ccdc88aQ5SNZ0 Tsfm-201ENSMUST00000040560 1206 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Ccdc88aQ5SNZ0 Ydjc-201ENSMUST00000069064 1297 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Ccdc88aQ5SNZ0 Pole4-201ENSMUST00000095786 1769 ntAPPRIS P2 TSL 1 (best) BASIC18.8■□□□□ 0.6
Ccdc88aQ5SNZ0 Irf7-202ENSMUST00000097952 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
Ccdc88aQ5SNZ0 4930528D03Rik-201ENSMUST00000181528 1339 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
Ccdc88aQ5SNZ0 Krt84-201ENSMUST00000023720 2570 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Ccdc88aQ5SNZ0 Sertad4-204ENSMUST00000155579 3350 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Ccdc88aQ5SNZ0 Cyp2w1-201ENSMUST00000031521 1512 ntAPPRIS P1 TSL 5 BASIC18.8■□□□□ 0.6
Ccdc88aQ5SNZ0 Hpcal1-201ENSMUST00000071858 1526 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Ccdc88aQ5SNZ0 Gm26596-201ENSMUST00000180464 2655 ntBASIC18.8■□□□□ 0.6
Ccdc88aQ5SNZ0 Tmem217-201ENSMUST00000114683 904 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Ccdc88aQ5SNZ0 Sumo3-204ENSMUST00000129492 487 ntAPPRIS ALT2 TSL 2 BASIC18.8■□□□□ 0.6
Retrieved 100 of 76,532 protein–RNA pairs in 18.8 ms