Protein–RNA interactions for Protein: Q4QRL3

Ccdc88b, Coiled-coil domain-containing protein 88B, mousemouse

Predictions only

Length 1,481 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc88bQ4QRL3 5830454E08Rik-202ENSMUST00000213974 744 ntBASIC26.68■■□□□ 1.86
Ccdc88bQ4QRL3 Rogdi-202ENSMUST00000090453 652 ntTSL 5 BASIC26.68■■□□□ 1.86
Ccdc88bQ4QRL3 Gm14317-201ENSMUST00000151754 1464 ntTSL 1 (best) BASIC26.68■■□□□ 1.86
Ccdc88bQ4QRL3 Ppif-201ENSMUST00000022419 1549 ntAPPRIS P1 TSL 1 (best) BASIC26.68■■□□□ 1.86
Ccdc88bQ4QRL3 Prlhr-201ENSMUST00000051277 1572 ntAPPRIS P1 BASIC26.68■■□□□ 1.86
Ccdc88bQ4QRL3 Axin1-203ENSMUST00000163421 2890 ntAPPRIS ALT2 TSL 5 BASIC26.68■■□□□ 1.86
Ccdc88bQ4QRL3 Gm15743-202ENSMUST00000182690 1901 ntBASIC26.68■■□□□ 1.86
Ccdc88bQ4QRL3 Tatdn2-202ENSMUST00000113022 2416 ntAPPRIS ALT2 TSL 1 (best) BASIC26.68■■□□□ 1.86
Ccdc88bQ4QRL3 Tmem33-206ENSMUST00000162543 664 ntTSL 1 (best) BASIC26.68■■□□□ 1.86
Ccdc88bQ4QRL3 Lcat-201ENSMUST00000038896 1342 ntAPPRIS P1 TSL 1 (best) BASIC26.68■■□□□ 1.86
Ccdc88bQ4QRL3 Gm5837-201ENSMUST00000191844 1369 ntBASIC26.68■■□□□ 1.86
Ccdc88bQ4QRL3 Slc25a39-201ENSMUST00000018821 1685 ntAPPRIS P2 TSL 1 (best) BASIC26.67■■□□□ 1.86
Ccdc88bQ4QRL3 Pigz-201ENSMUST00000052174 2184 ntAPPRIS P1 TSL 1 (best) BASIC26.67■■□□□ 1.86
Ccdc88bQ4QRL3 Mterf1a-202ENSMUST00000117463 2413 ntAPPRIS P1 TSL 1 (best) BASIC26.67■■□□□ 1.86
Ccdc88bQ4QRL3 Slc47a1-201ENSMUST00000010267 2639 ntAPPRIS P1 TSL 2 BASIC26.67■■□□□ 1.86
Ccdc88bQ4QRL3 Tmem163-203ENSMUST00000160616 2657 ntAPPRIS P1 TSL 2 BASIC26.67■■□□□ 1.86
Ccdc88bQ4QRL3 Fcho1-209ENSMUST00000146100 3188 ntAPPRIS P1 TSL 1 (best) BASIC26.67■■□□□ 1.86
Ccdc88bQ4QRL3 Gm20604-201ENSMUST00000174651 2795 ntAPPRIS P1 TSL 2 BASIC26.67■■□□□ 1.86
Ccdc88bQ4QRL3 Tm9sf1-205ENSMUST00000122358 2517 ntAPPRIS P1 TSL 1 (best) BASIC26.67■■□□□ 1.86
Ccdc88bQ4QRL3 Raxos1-201ENSMUST00000181100 2547 ntTSL 1 (best) BASIC26.67■■□□□ 1.86
Ccdc88bQ4QRL3 Dnajc19-201ENSMUST00000011029 2499 ntTSL 1 (best) BASIC26.67■■□□□ 1.86
Ccdc88bQ4QRL3 Ggnbp2-201ENSMUST00000018547 2478 ntTSL 5 BASIC26.67■■□□□ 1.86
Ccdc88bQ4QRL3 Gm13216-201ENSMUST00000117145 591 ntBASIC26.67■■□□□ 1.86
Ccdc88bQ4QRL3 Gm43332-201ENSMUST00000202511 1044 ntBASIC26.67■■□□□ 1.86
Ccdc88bQ4QRL3 1700012D14Rik-201ENSMUST00000209597 605 ntTSL 3 BASIC26.67■■□□□ 1.86
Ccdc88bQ4QRL3 Gm16845-202ENSMUST00000216270 567 ntTSL 2 BASIC26.67■■□□□ 1.86
Ccdc88bQ4QRL3 Eif5a-203ENSMUST00000071026 1286 ntAPPRIS P1 TSL 1 (best) BASIC26.67■■□□□ 1.86
Ccdc88bQ4QRL3 Sos2-206ENSMUST00000183277 4512 ntAPPRIS ALT2 TSL 5 BASIC26.67■■□□□ 1.86
Ccdc88bQ4QRL3 Trim31-201ENSMUST00000078438 2257 ntAPPRIS P1 TSL 1 (best) BASIC26.66■■□□□ 1.86
Ccdc88bQ4QRL3 Cspp1-203ENSMUST00000118263 2162 ntTSL 1 (best) BASIC26.66■■□□□ 1.86
Ccdc88bQ4QRL3 Dnajc2-204ENSMUST00000115195 1994 ntTSL 5 BASIC26.66■■□□□ 1.86
Ccdc88bQ4QRL3 Dvl2-201ENSMUST00000019362 2968 ntAPPRIS P1 TSL 1 (best) BASIC26.66■■□□□ 1.86
Ccdc88bQ4QRL3 Pofut1-204ENSMUST00000109794 1688 ntTSL 5 BASIC26.66■■□□□ 1.86
Ccdc88bQ4QRL3 Slc48a1-201ENSMUST00000117892 2536 ntAPPRIS P1 TSL 1 (best) BASIC26.66■■□□□ 1.86
Ccdc88bQ4QRL3 Rpl39l-202ENSMUST00000121292 550 ntAPPRIS P1 TSL 2 BASIC26.66■■□□□ 1.86
Ccdc88bQ4QRL3 Gm11594-201ENSMUST00000122313 162 ntBASIC26.66■■□□□ 1.86
Ccdc88bQ4QRL3 Gm15246-201ENSMUST00000149873 540 ntTSL 3 BASIC26.66■■□□□ 1.86
Ccdc88bQ4QRL3 Dynlt1b-201ENSMUST00000179569 768 ntAPPRIS P1 TSL 1 (best) BASIC26.66■■□□□ 1.86
Ccdc88bQ4QRL3 Gm27002-201ENSMUST00000182789 620 ntTSL 2 BASIC26.66■■□□□ 1.86
Ccdc88bQ4QRL3 4930442P19Rik-201ENSMUST00000193163 1240 ntBASIC26.66■■□□□ 1.86
Ccdc88bQ4QRL3 Acyp2-201ENSMUST00000074613 863 ntAPPRIS P1 TSL 1 (best) BASIC26.66■■□□□ 1.86
Ccdc88bQ4QRL3 Sorbs1-225ENSMUST00000226047 2582 ntAPPRIS ALT2 BASIC26.66■■□□□ 1.86
Ccdc88bQ4QRL3 Rhd-201ENSMUST00000030627 1514 ntAPPRIS P1 TSL 1 (best) BASIC26.65■■□□□ 1.86
Ccdc88bQ4QRL3 Hpcal1-201ENSMUST00000071858 1526 ntAPPRIS P1 TSL 1 (best) BASIC26.65■■□□□ 1.86
Ccdc88bQ4QRL3 Csk-201ENSMUST00000034863 2749 ntAPPRIS P1 TSL 1 (best) BASIC26.65■■□□□ 1.86
Ccdc88bQ4QRL3 Zfp92-202ENSMUST00000086470 2050 ntTSL 1 (best) BASIC26.65■■□□□ 1.86
Ccdc88bQ4QRL3 Psmc4-201ENSMUST00000032824 1440 ntAPPRIS P1 TSL 1 (best) BASIC26.65■■□□□ 1.86
Ccdc88bQ4QRL3 Rpf1-203ENSMUST00000199079 1978 ntTSL 1 (best) BASIC26.65■■□□□ 1.86
Ccdc88bQ4QRL3 Syngr3-201ENSMUST00000007236 1965 ntAPPRIS P1 TSL 1 (best) BASIC26.65■■□□□ 1.86
Ccdc88bQ4QRL3 AC159106.1-201ENSMUST00000224421 690 ntBASIC26.65■■□□□ 1.86
Ccdc88bQ4QRL3 Psmb5-202ENSMUST00000227257 622 ntBASIC26.65■■□□□ 1.86
Ccdc88bQ4QRL3 Sil1-201ENSMUST00000025215 1695 ntAPPRIS P1 TSL 1 (best) BASIC26.65■■□□□ 1.86
Ccdc88bQ4QRL3 Trappc11-202ENSMUST00000120987 2060 ntTSL 1 (best) BASIC26.65■■□□□ 1.86
Ccdc88bQ4QRL3 Fbxl21-201ENSMUST00000045428 1965 ntAPPRIS P1 TSL 1 (best) BASIC26.65■■□□□ 1.86
Ccdc88bQ4QRL3 Hirip3-201ENSMUST00000037248 2766 ntAPPRIS P1 TSL 1 (best) BASIC26.65■■□□□ 1.86
Ccdc88bQ4QRL3 Scamp3-203ENSMUST00000120697 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC26.65■■□□□ 1.86
Ccdc88bQ4QRL3 Atat1-202ENSMUST00000061052 1452 ntAPPRIS ALT2 TSL 1 (best) BASIC26.65■■□□□ 1.86
Ccdc88bQ4QRL3 Chga-201ENSMUST00000021610 1883 ntAPPRIS P1 TSL 1 (best) BASIC26.64■■□□□ 1.86
Ccdc88bQ4QRL3 Gm8784-201ENSMUST00000222096 1435 ntBASIC26.64■■□□□ 1.86
Ccdc88bQ4QRL3 Gstm4-201ENSMUST00000029489 1707 ntAPPRIS P1 TSL 1 (best) BASIC26.64■■□□□ 1.86
Ccdc88bQ4QRL3 Hpn-201ENSMUST00000039435 1743 ntTSL 1 (best) BASIC26.64■■□□□ 1.86
Ccdc88bQ4QRL3 Kat5-201ENSMUST00000113641 2008 ntAPPRIS P1 TSL 1 (best) BASIC26.64■■□□□ 1.86
Ccdc88bQ4QRL3 Fam3a-203ENSMUST00000114139 931 ntTSL 5 BASIC26.64■■□□□ 1.86
Ccdc88bQ4QRL3 Gm13036-201ENSMUST00000117799 748 ntBASIC26.64■■□□□ 1.86
Ccdc88bQ4QRL3 Gm42670-201ENSMUST00000201816 1292 ntBASIC26.64■■□□□ 1.86
Ccdc88bQ4QRL3 AV026068-213ENSMUST00000223675 1171 ntBASIC26.64■■□□□ 1.86
Ccdc88bQ4QRL3 Pan3-209ENSMUST00000176600 5541 ntAPPRIS ALT2 TSL 5 BASIC26.63■■□□□ 1.85
Ccdc88bQ4QRL3 Utp3-201ENSMUST00000090413 1629 ntAPPRIS P1 BASIC26.63■■□□□ 1.85
Ccdc88bQ4QRL3 Tubb4b-201ENSMUST00000043584 1598 ntAPPRIS P1 TSL 1 (best) BASIC26.63■■□□□ 1.85
Ccdc88bQ4QRL3 Gm27646-201ENSMUST00000183989 110 ntBASIC26.63■■□□□ 1.85
Ccdc88bQ4QRL3 Fam26f-201ENSMUST00000062784 1094 ntAPPRIS P1 TSL 1 (best) BASIC26.63■■□□□ 1.85
Ccdc88bQ4QRL3 Cables1-201ENSMUST00000046948 3202 ntAPPRIS P3 TSL 1 (best) BASIC26.63■■□□□ 1.85
Ccdc88bQ4QRL3 Il7-203ENSMUST00000192202 2057 ntTSL 1 (best) BASIC26.63■■□□□ 1.85
Ccdc88bQ4QRL3 Dlg3-202ENSMUST00000087984 4956 ntAPPRIS P1 TSL 1 (best) BASIC26.63■■□□□ 1.85
Ccdc88bQ4QRL3 Dbnl-202ENSMUST00000102928 2295 ntAPPRIS P3 TSL 1 (best) BASIC26.63■■□□□ 1.85
Ccdc88bQ4QRL3 Fam178b-202ENSMUST00000170295 2286 ntAPPRIS ALT2 TSL 5 BASIC26.63■■□□□ 1.85
Ccdc88bQ4QRL3 Slc29a1-202ENSMUST00000064889 1988 ntAPPRIS P3 TSL 1 (best) BASIC26.63■■□□□ 1.85
Ccdc88bQ4QRL3 Gm15635-204ENSMUST00000208024 2539 ntBASIC26.63■■□□□ 1.85
Ccdc88bQ4QRL3 Wscd1-202ENSMUST00000108510 2956 ntAPPRIS P1 TSL 5 BASIC26.63■■□□□ 1.85
Ccdc88bQ4QRL3 Arl4a-201ENSMUST00000101472 1200 ntAPPRIS P1 TSL 1 (best) BASIC26.62■■□□□ 1.85
Ccdc88bQ4QRL3 Gm11536-201ENSMUST00000130733 535 ntTSL 1 (best) BASIC26.62■■□□□ 1.85
Ccdc88bQ4QRL3 Nek4-204ENSMUST00000226833 1252 ntAPPRIS ALT2 BASIC26.62■■□□□ 1.85
Ccdc88bQ4QRL3 Pfn3-201ENSMUST00000054146 545 ntAPPRIS P1 BASIC26.62■■□□□ 1.85
Ccdc88bQ4QRL3 Hist1h2ab-201ENSMUST00000078369 473 ntAPPRIS P1 BASIC26.62■■□□□ 1.85
Ccdc88bQ4QRL3 Jak2-202ENSMUST00000065796 5030 ntAPPRIS P1 TSL 5 BASIC26.62■■□□□ 1.85
Ccdc88bQ4QRL3 Slc9a6-201ENSMUST00000077741 4976 ntAPPRIS P1 TSL 1 (best) BASIC26.62■■□□□ 1.85
Ccdc88bQ4QRL3 Gm10505-201ENSMUST00000151398 1587 ntTSL 1 (best) BASIC26.62■■□□□ 1.85
Ccdc88bQ4QRL3 Dok4-201ENSMUST00000046461 2590 ntAPPRIS P1 TSL 1 (best) BASIC26.62■■□□□ 1.85
Ccdc88bQ4QRL3 Ncoa5-201ENSMUST00000040381 3179 ntAPPRIS P1 TSL 1 (best) BASIC26.62■■□□□ 1.85
Ccdc88bQ4QRL3 Ptgis-201ENSMUST00000018113 2107 ntAPPRIS P1 TSL 1 (best) BASIC26.62■■□□□ 1.85
Ccdc88bQ4QRL3 Snx8-204ENSMUST00000196130 2547 ntAPPRIS ALT2 TSL 1 (best) BASIC26.62■■□□□ 1.85
Ccdc88bQ4QRL3 Gm26580-201ENSMUST00000181002 2095 ntTSL 5 BASIC26.62■■□□□ 1.85
Ccdc88bQ4QRL3 Mettl27-202ENSMUST00000068617 1685 ntTSL 1 (best) BASIC26.62■■□□□ 1.85
Ccdc88bQ4QRL3 Alg3-201ENSMUST00000045918 1451 ntAPPRIS P1 TSL 1 (best) BASIC26.62■■□□□ 1.85
Ccdc88bQ4QRL3 Ftl2-ps-201ENSMUST00000118517 552 ntBASIC26.62■■□□□ 1.85
Ccdc88bQ4QRL3 Gm13830-202ENSMUST00000144202 381 ntTSL 3 BASIC26.62■■□□□ 1.85
Ccdc88bQ4QRL3 Gm27628-201ENSMUST00000184911 107 ntBASIC26.62■■□□□ 1.85
Ccdc88bQ4QRL3 Csrp2-207ENSMUST00000220409 780 ntTSL 2 BASIC26.62■■□□□ 1.85
Ccdc88bQ4QRL3 Gm15590-201ENSMUST00000078419 552 ntBASIC26.62■■□□□ 1.85
Ccdc88bQ4QRL3 Enoph1-201ENSMUST00000031268 1420 ntAPPRIS P1 TSL 1 (best) BASIC26.61■■□□□ 1.85
Retrieved 100 of 76,532 protein–RNA pairs in 21.4 ms