Protein–RNA interactions for Protein: Q3ULJ3

Upf3a, MCG3697, isoform CRA_c, mousemouse

Predictions only

Length 422 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3aQ3ULJ3 2810039B14Rik-201ENSMUST00000183928 1459 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
Upf3aQ3ULJ3 Fosl1-201ENSMUST00000025850 1707 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Upf3aQ3ULJ3 Srrm2-209ENSMUST00000190686 8864 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
Upf3aQ3ULJ3 Epha10-201ENSMUST00000059343 2544 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Upf3aQ3ULJ3 Mif4gd-201ENSMUST00000021087 1372 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Upf3aQ3ULJ3 Pigw-201ENSMUST00000067058 2675 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Upf3aQ3ULJ3 Fam221a-202ENSMUST00000121903 1304 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
Upf3aQ3ULJ3 Mtss1l-201ENSMUST00000052457 4717 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Upf3aQ3ULJ3 Tfap2a-208ENSMUST00000224999 2058 ntAPPRIS ALT1 BASIC17.29■□□□□ 0.36
Upf3aQ3ULJ3 1700008O03Rik-201ENSMUST00000107933 913 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Upf3aQ3ULJ3 Olfr1564-201ENSMUST00000112162 1091 ntAPPRIS P2 BASIC17.29■□□□□ 0.36
Upf3aQ3ULJ3 1700039E22Rik-201ENSMUST00000174082 770 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
Upf3aQ3ULJ3 Gm3764-206ENSMUST00000181356 1088 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
Upf3aQ3ULJ3 Lrr1-203ENSMUST00000222520 767 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
Upf3aQ3ULJ3 Lce1l-201ENSMUST00000054426 670 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Upf3aQ3ULJ3 Mettl27-204ENSMUST00000111219 1790 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Upf3aQ3ULJ3 Atp2c1-204ENSMUST00000112558 5642 ntAPPRIS P3 TSL 1 (best) BASIC17.29■□□□□ 0.36
Upf3aQ3ULJ3 Rnf157-202ENSMUST00000106398 4553 ntAPPRIS ALT2 TSL 5 BASIC17.29■□□□□ 0.36
Upf3aQ3ULJ3 Adck1-204ENSMUST00000222695 2253 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Upf3aQ3ULJ3 Nxnl1-201ENSMUST00000048243 2285 ntAPPRIS P1 TSL 2 BASIC17.28■□□□□ 0.36
Upf3aQ3ULJ3 Spata2l-202ENSMUST00000166768 2707 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Upf3aQ3ULJ3 Otud5-201ENSMUST00000033494 4259 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
Upf3aQ3ULJ3 Itsn1-201ENSMUST00000056482 5364 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
Upf3aQ3ULJ3 Gm37519-201ENSMUST00000191687 2210 ntBASIC17.28■□□□□ 0.36
Upf3aQ3ULJ3 Mzt1-201ENSMUST00000042662 2240 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Upf3aQ3ULJ3 Nrxn2-203ENSMUST00000113459 3285 ntTSL 2 BASIC17.28■□□□□ 0.36
Upf3aQ3ULJ3 Plxnd1-201ENSMUST00000015511 6907 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Upf3aQ3ULJ3 Mef2b-201ENSMUST00000110140 1223 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
Upf3aQ3ULJ3 Mef2b-202ENSMUST00000110141 1253 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
Upf3aQ3ULJ3 Csrp3-202ENSMUST00000167786 899 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Upf3aQ3ULJ3 Gm8000-201ENSMUST00000188378 592 ntBASIC17.28■□□□□ 0.36
Upf3aQ3ULJ3 Gm13283-201ENSMUST00000191112 1463 ntAPPRIS P1 BASIC17.28■□□□□ 0.36
Upf3aQ3ULJ3 AC154527.4-201ENSMUST00000224364 1667 ntBASIC17.28■□□□□ 0.36
Upf3aQ3ULJ3 Rbpj-203ENSMUST00000113865 5440 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Upf3aQ3ULJ3 Slc25a47-202ENSMUST00000221080 1890 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
Upf3aQ3ULJ3 Pitx1-201ENSMUST00000021968 2451 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Upf3aQ3ULJ3 Dcaf8-206ENSMUST00000192704 2859 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Upf3aQ3ULJ3 Zfyve19-201ENSMUST00000090174 2008 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Upf3aQ3ULJ3 Gm42939-201ENSMUST00000197514 2205 ntBASIC17.28■□□□□ 0.36
Upf3aQ3ULJ3 Tedc2-201ENSMUST00000024930 2166 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Upf3aQ3ULJ3 Taf6l-213ENSMUST00000189739 1794 ntTSL 5 BASIC17.28■□□□□ 0.36
Upf3aQ3ULJ3 Bmt2-201ENSMUST00000045235 4143 ntAPPRIS P2 TSL 1 (best) BASIC17.28■□□□□ 0.36
Upf3aQ3ULJ3 Gfy-201ENSMUST00000179443 1849 ntAPPRIS P1 TSL 5 BASIC17.27■□□□□ 0.36
Upf3aQ3ULJ3 Arl4a-201ENSMUST00000101472 1200 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Upf3aQ3ULJ3 Sec22b-202ENSMUST00000122288 1177 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
Upf3aQ3ULJ3 Gm14641-201ENSMUST00000136486 452 ntTSL 3 BASIC17.27■□□□□ 0.36
Upf3aQ3ULJ3 Psmb1-201ENSMUST00000014913 1036 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Upf3aQ3ULJ3 Gm25925-201ENSMUST00000158314 306 ntBASIC17.27■□□□□ 0.36
Upf3aQ3ULJ3 Ndufaf8-202ENSMUST00000185558 427 ntTSL 5 BASIC17.27■□□□□ 0.36
Upf3aQ3ULJ3 Dnmt3a-ps1-201ENSMUST00000192011 1271 ntBASIC17.27■□□□□ 0.36
Upf3aQ3ULJ3 Tamm41-201ENSMUST00000032461 1168 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Upf3aQ3ULJ3 Chmp2a-201ENSMUST00000005711 949 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Upf3aQ3ULJ3 Ing1-202ENSMUST00000209565 1971 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
Upf3aQ3ULJ3 Pla2g10-201ENSMUST00000023364 1423 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
Upf3aQ3ULJ3 Mrm2-201ENSMUST00000031536 1443 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
Upf3aQ3ULJ3 Arhgef9-208ENSMUST00000128565 2285 ntTSL 5 BASIC17.27■□□□□ 0.35
Upf3aQ3ULJ3 Hexb-201ENSMUST00000022169 1905 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
Upf3aQ3ULJ3 Tssc4-206ENSMUST00000177841 1364 ntAPPRIS P1 TSL 2 BASIC17.27■□□□□ 0.35
Upf3aQ3ULJ3 Sulf2-201ENSMUST00000088086 3927 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
Upf3aQ3ULJ3 Ssc4d-204ENSMUST00000111153 2745 ntAPPRIS P1 TSL 5 BASIC17.27■□□□□ 0.35
Upf3aQ3ULJ3 Retreg1-201ENSMUST00000022881 3248 ntTSL 5 BASIC17.26■□□□□ 0.35
Upf3aQ3ULJ3 Mink1-205ENSMUST00000102559 4865 ntAPPRIS P4 TSL 1 (best) BASIC17.26■□□□□ 0.35
Upf3aQ3ULJ3 Atp9a-203ENSMUST00000109176 3691 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
Upf3aQ3ULJ3 Tgfb1i1-205ENSMUST00000165667 1812 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
Upf3aQ3ULJ3 Gm11750-201ENSMUST00000146016 583 ntTSL 5 BASIC17.26■□□□□ 0.35
Upf3aQ3ULJ3 Gm8349-201ENSMUST00000182720 1003 ntBASIC17.26■□□□□ 0.35
Upf3aQ3ULJ3 Rps13-ps1-201ENSMUST00000183478 538 ntBASIC17.26■□□□□ 0.35
Upf3aQ3ULJ3 1300002E11Rik-207ENSMUST00000211443 767 ntTSL 5 BASIC17.26■□□□□ 0.35
Upf3aQ3ULJ3 Nudt11-201ENSMUST00000103007 3036 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Upf3aQ3ULJ3 Nsun5-201ENSMUST00000000940 2243 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Upf3aQ3ULJ3 Snip1-201ENSMUST00000052183 2345 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Upf3aQ3ULJ3 Gm45844-202ENSMUST00000209325 2450 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
Upf3aQ3ULJ3 Gm9954-202ENSMUST00000198686 4725 ntBASIC17.26■□□□□ 0.35
Upf3aQ3ULJ3 Cep57-208ENSMUST00000147115 2262 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
Upf3aQ3ULJ3 Nagpa-203ENSMUST00000147567 2230 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
Upf3aQ3ULJ3 E330011M16Rik-201ENSMUST00000193614 1794 ntBASIC17.25■□□□□ 0.35
Upf3aQ3ULJ3 4833418N02Rik-202ENSMUST00000146560 1495 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
Upf3aQ3ULJ3 Pacsin1-204ENSMUST00000114873 1857 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Upf3aQ3ULJ3 Fhl2-201ENSMUST00000008280 1563 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Upf3aQ3ULJ3 Klc1-202ENSMUST00000118471 2272 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
Upf3aQ3ULJ3 Edem1-201ENSMUST00000089162 5817 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Upf3aQ3ULJ3 Gm12497-201ENSMUST00000138778 237 ntBASIC17.25■□□□□ 0.35
Upf3aQ3ULJ3 Gm16194-203ENSMUST00000141239 362 ntTSL 3 BASIC17.25■□□□□ 0.35
Upf3aQ3ULJ3 1700023H06Rik-201ENSMUST00000161006 1044 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
Upf3aQ3ULJ3 Gm21887-203ENSMUST00000180251 531 ntAPPRIS P5 TSL 5 BASIC17.25■□□□□ 0.35
Upf3aQ3ULJ3 Gm37584-201ENSMUST00000193595 1290 ntBASIC17.25■□□□□ 0.35
Upf3aQ3ULJ3 Gm43332-201ENSMUST00000202511 1044 ntBASIC17.25■□□□□ 0.35
Upf3aQ3ULJ3 Gm40849-201ENSMUST00000222330 603 ntTSL 3 BASIC17.25■□□□□ 0.35
Upf3aQ3ULJ3 Dnph1-201ENSMUST00000046497 1106 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Upf3aQ3ULJ3 Psma5-201ENSMUST00000090569 1239 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Upf3aQ3ULJ3 Mrgpra9-201ENSMUST00000098436 1049 ntAPPRIS ALT2 TSL 5 BASIC17.25■□□□□ 0.35
Upf3aQ3ULJ3 Atf7-209ENSMUST00000184485 2523 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Upf3aQ3ULJ3 Mvk-201ENSMUST00000043760 1660 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
Upf3aQ3ULJ3 Aldh5a1-201ENSMUST00000037615 5647 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Upf3aQ3ULJ3 Sh3yl1-201ENSMUST00000020997 1750 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
Upf3aQ3ULJ3 Coq6-201ENSMUST00000021661 1602 ntAPPRIS P2 TSL 1 (best) BASIC17.25■□□□□ 0.35
Upf3aQ3ULJ3 Klf3-201ENSMUST00000165536 5221 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Upf3aQ3ULJ3 Mapk1ip1-203ENSMUST00000119664 1883 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Upf3aQ3ULJ3 Kcnj4-201ENSMUST00000057801 2148 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Upf3aQ3ULJ3 Gm11620-201ENSMUST00000118770 1845 ntBASIC17.24■□□□□ 0.35
Retrieved 100 of 76,532 protein–RNA pairs in 41.1 ms