Protein–RNA interactions for Protein: Q3UH68

Limch1, LIM and calponin homology domains-containing protein 1, mousemouse

Predictions only

Length 1,057 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Limch1Q3UH68 Cdc25a-201ENSMUST00000094324 3632 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Limch1Q3UH68 Eml1-203ENSMUST00000109860 4160 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Limch1Q3UH68 Hivep3-201ENSMUST00000084306 2973 ntBASIC19.36■□□□□ 0.69
Limch1Q3UH68 Ebf1-203ENSMUST00000109268 2864 ntAPPRIS ALT1 TSL 5 BASIC19.36■□□□□ 0.69
Limch1Q3UH68 Gm26568-201ENSMUST00000180496 1594 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
Limch1Q3UH68 Ptges2-201ENSMUST00000028162 4978 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Limch1Q3UH68 Unc13b-203ENSMUST00000107953 5034 ntAPPRIS ALT2 TSL 5 BASIC19.35■□□□□ 0.69
Limch1Q3UH68 Hmg20b-213ENSMUST00000167481 1321 ntAPPRIS P1 TSL 5 BASIC19.35■□□□□ 0.69
Limch1Q3UH68 5830415G21Rik-201ENSMUST00000192543 1332 ntBASIC19.35■□□□□ 0.69
Limch1Q3UH68 Crocc-203ENSMUST00000102491 6582 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Limch1Q3UH68 Mzf1-202ENSMUST00000182087 2197 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
Limch1Q3UH68 Hmga1-206ENSMUST00000119486 1003 ntAPPRIS P3 TSL 2 BASIC19.35■□□□□ 0.69
Limch1Q3UH68 Gm29518-201ENSMUST00000190858 372 ntBASIC19.35■□□□□ 0.69
Limch1Q3UH68 Fuz-206ENSMUST00000207485 1140 ntAPPRIS ALT1 TSL 5 BASIC19.35■□□□□ 0.69
Limch1Q3UH68 Was-201ENSMUST00000033505 2114 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Limch1Q3UH68 Tctex1d4-201ENSMUST00000062206 990 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Limch1Q3UH68 Glis1-201ENSMUST00000046005 2906 ntAPPRIS P2 TSL 1 (best) BASIC19.35■□□□□ 0.69
Limch1Q3UH68 Wrb-201ENSMUST00000023913 2495 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Limch1Q3UH68 Fbxl21-201ENSMUST00000045428 1965 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Limch1Q3UH68 Gm16867-201ENSMUST00000179116 3084 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Limch1Q3UH68 Gm10435-202ENSMUST00000162526 2878 ntTSL 5 BASIC19.34■□□□□ 0.69
Limch1Q3UH68 Fezf1-201ENSMUST00000031709 2409 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Limch1Q3UH68 Ap1m1-201ENSMUST00000003117 2084 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Limch1Q3UH68 Cep104-201ENSMUST00000047497 5151 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Limch1Q3UH68 Slc25a23-201ENSMUST00000040280 3362 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Limch1Q3UH68 Gabpa-201ENSMUST00000009120 4987 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Limch1Q3UH68 Gm26795-201ENSMUST00000180993 1952 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
Limch1Q3UH68 Krtap1-4-201ENSMUST00000100479 593 ntAPPRIS P1 BASIC19.34■□□□□ 0.69
Limch1Q3UH68 Hnrnph3-203ENSMUST00000119814 682 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
Limch1Q3UH68 Pld6-202ENSMUST00000125307 948 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Limch1Q3UH68 Gm13025-201ENSMUST00000141469 1163 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
Limch1Q3UH68 Lamtor5-201ENSMUST00000145735 881 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
Limch1Q3UH68 Psme2-208ENSMUST00000161807 962 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Limch1Q3UH68 Gm17092-201ENSMUST00000166606 698 ntTSL 2 BASIC19.34■□□□□ 0.69
Limch1Q3UH68 1810026B05Rik-205ENSMUST00000184855 409 ntTSL 3 BASIC19.34■□□□□ 0.69
Limch1Q3UH68 Samd13-205ENSMUST00000197989 591 ntTSL 5 BASIC19.34■□□□□ 0.69
Limch1Q3UH68 Cops7b-201ENSMUST00000027446 2231 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Limch1Q3UH68 Abhd5-204ENSMUST00000156520 3157 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Limch1Q3UH68 Zpbp2-203ENSMUST00000107509 1577 ntAPPRIS ALT2 TSL 1 (best) BASIC19.34■□□□□ 0.69
Limch1Q3UH68 Hmgb3-202ENSMUST00000072699 1571 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Limch1Q3UH68 Plcl2-201ENSMUST00000043938 4050 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Limch1Q3UH68 Vim-201ENSMUST00000028062 2193 ntAPPRIS P2 TSL 1 (best) BASIC19.34■□□□□ 0.69
Limch1Q3UH68 Agpat1-201ENSMUST00000037489 2190 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Limch1Q3UH68 A830073O21Rik-202ENSMUST00000205693 3096 ntBASIC19.34■□□□□ 0.69
Limch1Q3UH68 Shox2-202ENSMUST00000162060 1537 ntTSL 3 BASIC19.34■□□□□ 0.69
Limch1Q3UH68 Acvrl1-203ENSMUST00000119063 1818 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Limch1Q3UH68 Hap1-201ENSMUST00000103124 2120 ntAPPRIS P3 TSL 1 (best) BASIC19.34■□□□□ 0.69
Limch1Q3UH68 A230103J11Rik-202ENSMUST00000156084 2086 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
Limch1Q3UH68 Ddhd1-201ENSMUST00000051310 5012 ntAPPRIS P3 TSL 1 (best) BASIC19.34■□□□□ 0.69
Limch1Q3UH68 Fbxl19-204ENSMUST00000188580 2601 ntAPPRIS ALT2 TSL 1 (best) BASIC19.34■□□□□ 0.69
Limch1Q3UH68 Gbx1-201ENSMUST00000088311 3475 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Limch1Q3UH68 Lhx8-205ENSMUST00000205251 1729 ntAPPRIS P1 TSL 5 BASIC19.34■□□□□ 0.69
Limch1Q3UH68 Renbp-202ENSMUST00000116578 1418 ntAPPRIS P2 TSL 1 (best) BASIC19.34■□□□□ 0.69
Limch1Q3UH68 Ube2d1-201ENSMUST00000020085 1431 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Limch1Q3UH68 Wdtc1-201ENSMUST00000043305 4191 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
Limch1Q3UH68 Cadps2-212ENSMUST00000163871 4969 ntAPPRIS ALT2 TSL 5 BASIC19.33■□□□□ 0.69
Limch1Q3UH68 Hnrnpll-205ENSMUST00000184635 3009 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
Limch1Q3UH68 Gm6190-201ENSMUST00000220683 1374 ntBASIC19.33■□□□□ 0.69
Limch1Q3UH68 Atp5a1-201ENSMUST00000026495 2471 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
Limch1Q3UH68 Klhdc8b-214ENSMUST00000195435 1612 ntTSL 5 BASIC19.33■□□□□ 0.69
Limch1Q3UH68 Itgb4-205ENSMUST00000106461 6208 ntAPPRIS ALT2 TSL 5 BASIC19.33■□□□□ 0.69
Limch1Q3UH68 Csnk1e-201ENSMUST00000117786 2694 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
Limch1Q3UH68 Pdk3-201ENSMUST00000045748 2115 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
Limch1Q3UH68 Zdhhc2-201ENSMUST00000049389 3381 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
Limch1Q3UH68 Gm26917-202ENSMUST00000192833 3329 ntBASIC19.33■□□□□ 0.69
Limch1Q3UH68 Gm13186-201ENSMUST00000118031 316 ntBASIC19.33■□□□□ 0.68
Limch1Q3UH68 Gm17971-201ENSMUST00000190239 806 ntBASIC19.33■□□□□ 0.68
Limch1Q3UH68 Gm43791-201ENSMUST00000202914 468 ntTSL 5 BASIC19.33■□□□□ 0.68
Limch1Q3UH68 Pagr1a-203ENSMUST00000206416 558 ntTSL 3 BASIC19.33■□□□□ 0.68
Limch1Q3UH68 Alkbh2-201ENSMUST00000053657 1073 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Limch1Q3UH68 Nt5c1a-201ENSMUST00000068262 1220 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Limch1Q3UH68 Taar2-201ENSMUST00000079134 1020 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Limch1Q3UH68 A130010J15Rik-201ENSMUST00000110831 2257 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Limch1Q3UH68 Carmil2-201ENSMUST00000062574 2526 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
Limch1Q3UH68 Adgra3-201ENSMUST00000030971 4480 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Limch1Q3UH68 Kdm5b-203ENSMUST00000112198 5413 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.68
Limch1Q3UH68 Mrpl37-201ENSMUST00000030365 1498 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Limch1Q3UH68 Nmt2-203ENSMUST00000102989 2162 ntAPPRIS P1 TSL 5 BASIC19.33■□□□□ 0.68
Limch1Q3UH68 Prodh-201ENSMUST00000003620 2385 ntAPPRIS P2 TSL 1 (best) BASIC19.33■□□□□ 0.68
Limch1Q3UH68 Scrt1-202ENSMUST00000164703 3478 ntAPPRIS P1 TSL 2 BASIC19.33■□□□□ 0.68
Limch1Q3UH68 Fiz1-201ENSMUST00000077385 2546 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Limch1Q3UH68 Chn1-209ENSMUST00000166199 3876 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
Limch1Q3UH68 Gm20460-201ENSMUST00000168709 1572 ntTSL 5 BASIC19.32■□□□□ 0.68
Limch1Q3UH68 Pbx4-201ENSMUST00000081503 1560 ntAPPRIS P1 TSL 5 BASIC19.32■□□□□ 0.68
Limch1Q3UH68 Fmr1-205ENSMUST00000114656 4257 ntTSL 5 BASIC19.32■□□□□ 0.68
Limch1Q3UH68 Echdc2-203ENSMUST00000116307 893 ntTSL 5 BASIC19.32■□□□□ 0.68
Limch1Q3UH68 Pgam1-ps2-201ENSMUST00000117129 765 ntBASIC19.32■□□□□ 0.68
Limch1Q3UH68 Mras-203ENSMUST00000122384 1122 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Limch1Q3UH68 Aicda-202ENSMUST00000160685 1292 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
Limch1Q3UH68 Insl3-201ENSMUST00000034261 623 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Limch1Q3UH68 Foxp4-203ENSMUST00000113263 3156 ntAPPRIS ALT2 TSL 5 BASIC19.32■□□□□ 0.68
Limch1Q3UH68 Ykt6-201ENSMUST00000002818 2541 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Limch1Q3UH68 G3bp2-204ENSMUST00000169094 2716 ntAPPRIS P3 TSL 1 (best) BASIC19.32■□□□□ 0.68
Limch1Q3UH68 Nfe2-208ENSMUST00000149111 1878 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Limch1Q3UH68 Gm26663-201ENSMUST00000181105 1882 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
Limch1Q3UH68 Klc1-202ENSMUST00000118471 2272 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
Limch1Q3UH68 Rimbp3-201ENSMUST00000169803 5787 ntAPPRIS P1 BASIC19.32■□□□□ 0.68
Limch1Q3UH68 Gprc5b-201ENSMUST00000008878 4518 ntAPPRIS P3 TSL 1 (best) BASIC19.32■□□□□ 0.68
Limch1Q3UH68 Ikbke-204ENSMUST00000161764 2867 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
Limch1Q3UH68 Ints8-202ENSMUST00000108318 3169 ntTSL 5 BASIC19.32■□□□□ 0.68
Retrieved 100 of 76,532 protein–RNA pairs in 30.9 ms