Protein–RNA interactions for Protein: P11416

Rara, Retinoic acid receptor alpha, mousemouse

Predictions only

Length 462 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RaraP11416 Cend1-202ENSMUST00000124444 1733 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
RaraP11416 Cds2-202ENSMUST00000103181 8396 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
RaraP11416 Adnp-202ENSMUST00000088001 4932 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
RaraP11416 Lrrc14-202ENSMUST00000127208 4849 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
RaraP11416 Lhfpl3-202ENSMUST00000197992 3115 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
RaraP11416 Irf5-205ENSMUST00000167252 1693 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
RaraP11416 Vegfa-201ENSMUST00000024747 2765 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
RaraP11416 Bend5-201ENSMUST00000030274 1826 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
RaraP11416 Bpifb3-201ENSMUST00000088950 1821 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
RaraP11416 Mccc1-201ENSMUST00000029259 2455 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
RaraP11416 Anks6-201ENSMUST00000084616 3552 ntAPPRIS P1 TSL 5 BASIC17.79■□□□□ 0.44
RaraP11416 Slc35b2-202ENSMUST00000223987 1766 ntBASIC17.79■□□□□ 0.44
RaraP11416 Epor-201ENSMUST00000006397 1761 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
RaraP11416 Asap2-201ENSMUST00000050990 3345 ntAPPRIS ALT2 TSL 5 BASIC17.79■□□□□ 0.44
RaraP11416 Vstm5-201ENSMUST00000034413 1991 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
RaraP11416 Itga6-201ENSMUST00000028522 4310 ntAPPRIS P3 TSL 1 (best) BASIC17.79■□□□□ 0.44
RaraP11416 Mapk7-201ENSMUST00000079080 3019 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
RaraP11416 Atxn7-201ENSMUST00000022257 6853 ntAPPRIS P2 TSL 1 (best) BASIC17.79■□□□□ 0.44
RaraP11416 Dmpk-203ENSMUST00000108474 2591 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
RaraP11416 Rnf103-202ENSMUST00000114178 3431 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
RaraP11416 Gm11539-201ENSMUST00000119837 557 ntBASIC17.79■□□□□ 0.44
RaraP11416 Sct-202ENSMUST00000167790 507 ntAPPRIS P3 TSL 1 (best) BASIC17.79■□□□□ 0.44
RaraP11416 Ddah2-204ENSMUST00000174493 1254 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
RaraP11416 Gm19430-201ENSMUST00000193847 2137 ntBASIC17.79■□□□□ 0.44
RaraP11416 Gm21057-201ENSMUST00000206022 670 ntTSL 3 BASIC17.79■□□□□ 0.44
RaraP11416 Smim15-206ENSMUST00000226042 1092 ntAPPRIS P1 BASIC17.79■□□□□ 0.44
RaraP11416 Sct-201ENSMUST00000046156 534 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
RaraP11416 Gm10812-201ENSMUST00000099864 546 ntBASIC17.79■□□□□ 0.44
RaraP11416 Efnb3-201ENSMUST00000004036 3183 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
RaraP11416 Ccdc30-201ENSMUST00000044781 1464 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
RaraP11416 Dnajb11-204ENSMUST00000166487 2534 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
RaraP11416 Ube3c-201ENSMUST00000049453 5048 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
RaraP11416 Gnas-202ENSMUST00000087871 3903 ntAPPRIS P4 TSL 1 (best) BASIC17.79■□□□□ 0.44
RaraP11416 Lefty2-201ENSMUST00000085797 2473 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
RaraP11416 Otp-201ENSMUST00000022195 2656 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
RaraP11416 Washc1-202ENSMUST00000116556 2887 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
RaraP11416 E030042O20Rik-201ENSMUST00000135244 1427 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
RaraP11416 Senp7-211ENSMUST00000202000 3218 ntTSL 2 BASIC17.79■□□□□ 0.44
RaraP11416 Tfap2a-206ENSMUST00000224665 1958 ntAPPRIS ALT1 BASIC17.79■□□□□ 0.44
RaraP11416 Fam160a2-203ENSMUST00000118726 2855 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
RaraP11416 Acot7-206ENSMUST00000167926 1505 ntAPPRIS P4 TSL 1 (best) BASIC17.78■□□□□ 0.44
RaraP11416 AC093043.3-201ENSMUST00000226531 2273 ntBASIC17.78■□□□□ 0.44
RaraP11416 Polr1c-201ENSMUST00000087026 1314 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
RaraP11416 Tbp-202ENSMUST00000117593 2067 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
RaraP11416 Tbp-201ENSMUST00000014911 1891 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
RaraP11416 Mapk14-201ENSMUST00000004990 3547 ntAPPRIS ALT1 TSL 1 (best) BASIC17.78■□□□□ 0.44
RaraP11416 Mapk14-202ENSMUST00000062694 3547 ntAPPRIS P3 TSL 1 (best) BASIC17.78■□□□□ 0.44
RaraP11416 Cep104-201ENSMUST00000047497 5151 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
RaraP11416 Lcmt2-201ENSMUST00000099486 2047 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
RaraP11416 Lrrfip2-207ENSMUST00000197256 1819 ntTSL 5 BASIC17.78■□□□□ 0.44
RaraP11416 Snrnp48-202ENSMUST00000178564 847 ntTSL 5 BASIC17.78■□□□□ 0.44
RaraP11416 Arfip2-212ENSMUST00000209550 1141 ntAPPRIS ALT1 TSL 5 BASIC17.78■□□□□ 0.44
RaraP11416 Arfip2-214ENSMUST00000210911 938 ntTSL 5 BASIC17.78■□□□□ 0.44
RaraP11416 Pomc-204ENSMUST00000219543 1043 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
RaraP11416 Espn-202ENSMUST00000049305 1142 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
RaraP11416 Olfr464-201ENSMUST00000074874 1084 ntAPPRIS P1 BASIC17.78■□□□□ 0.44
RaraP11416 Gm3468-201ENSMUST00000165193 1955 ntAPPRIS P1 TSL 5 BASIC17.78■□□□□ 0.44
RaraP11416 Gm2956-201ENSMUST00000177786 1955 ntAPPRIS P1 TSL 5 BASIC17.78■□□□□ 0.44
RaraP11416 Unc13b-203ENSMUST00000107953 5034 ntAPPRIS ALT2 TSL 5 BASIC17.78■□□□□ 0.44
RaraP11416 Ptpdc1-201ENSMUST00000035824 4402 ntAPPRIS P2 TSL 1 (best) BASIC17.78■□□□□ 0.44
RaraP11416 Sgsm2-202ENSMUST00000081799 4873 ntAPPRIS ALT2 TSL 5 BASIC17.78■□□□□ 0.44
RaraP11416 Nr1h3-202ENSMUST00000111354 1738 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
RaraP11416 Rogdi-207ENSMUST00000202281 1355 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
RaraP11416 Helt-201ENSMUST00000058636 1541 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
RaraP11416 Mios-201ENSMUST00000040017 3710 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
RaraP11416 Slc29a1-222ENSMUST00000171847 2033 ntAPPRIS P3 TSL 1 (best) BASIC17.77■□□□□ 0.44
RaraP11416 Tox2-201ENSMUST00000099110 2166 ntAPPRIS ALT2 TSL 5 BASIC17.77■□□□□ 0.44
RaraP11416 Dzip3-202ENSMUST00000121869 5820 ntAPPRIS ALT2 TSL 5 BASIC17.77■□□□□ 0.44
RaraP11416 Foxq1-201ENSMUST00000042118 4843 ntAPPRIS P1 BASIC17.77■□□□□ 0.44
RaraP11416 Chchd4-201ENSMUST00000040835 3472 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
RaraP11416 Rffl-202ENSMUST00000071152 3633 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
RaraP11416 Anp32a-201ENSMUST00000085519 2113 ntAPPRIS P2 TSL 1 (best) BASIC17.77■□□□□ 0.44
RaraP11416 Ppm1h-206ENSMUST00000161487 2931 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
RaraP11416 Gm26889-201ENSMUST00000181523 2252 ntTSL 5 BASIC17.77■□□□□ 0.44
RaraP11416 Rassf1-204ENSMUST00000122225 1783 ntTSL 5 BASIC17.77■□□□□ 0.44
RaraP11416 H2-Q4-201ENSMUST00000081435 1793 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
RaraP11416 Itpkb-201ENSMUST00000070181 6235 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
RaraP11416 Echdc2-203ENSMUST00000116307 893 ntTSL 5 BASIC17.77■□□□□ 0.44
RaraP11416 Dohh-202ENSMUST00000121047 946 ntTSL 2 BASIC17.77■□□□□ 0.44
RaraP11416 Nsl1-203ENSMUST00000139340 837 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
RaraP11416 Gm14453-201ENSMUST00000139677 553 ntTSL 3 BASIC17.77■□□□□ 0.44
RaraP11416 H2afz-207ENSMUST00000174561 810 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
RaraP11416 Ssr2-207ENSMUST00000195014 1059 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
RaraP11416 Akip1-201ENSMUST00000033335 1028 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
RaraP11416 Hist1h2ai-201ENSMUST00000070124 393 ntAPPRIS P1 BASIC17.77■□□□□ 0.44
RaraP11416 Hist1h2an-201ENSMUST00000091751 393 ntAPPRIS P1 BASIC17.77■□□□□ 0.44
RaraP11416 Sept8-201ENSMUST00000108987 4436 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.44
RaraP11416 Cfap20-208ENSMUST00000213086 2544 ntTSL 2 BASIC17.77■□□□□ 0.44
RaraP11416 Bicdl1-204ENSMUST00000121746 1568 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
RaraP11416 Eif4g3-202ENSMUST00000084214 6139 ntAPPRIS P2 TSL 1 (best) BASIC17.77■□□□□ 0.44
RaraP11416 Zfp219-212ENSMUST00000228580 2812 ntAPPRIS ALT2 BASIC17.77■□□□□ 0.44
RaraP11416 Crhbp-201ENSMUST00000045583 1701 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
RaraP11416 Rnf170-209ENSMUST00000209300 1881 ntTSL 1 (best) BASIC17.77■□□□□ 0.43
RaraP11416 Rabggta-201ENSMUST00000062861 2338 ntTSL 1 (best) BASIC17.77■□□□□ 0.43
RaraP11416 Cap1-203ENSMUST00000106257 2768 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
RaraP11416 Serf2-204ENSMUST00000139253 3056 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
RaraP11416 Gm1043-204ENSMUST00000207866 4296 ntAPPRIS P1 TSL 5 BASIC17.77■□□□□ 0.43
RaraP11416 Tjp1-202ENSMUST00000102592 7049 ntAPPRIS P3 TSL 1 (best) BASIC17.76■□□□□ 0.43
RaraP11416 Ephb4-203ENSMUST00000111055 4296 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
RaraP11416 Pdcl3-201ENSMUST00000027247 3914 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Retrieved 100 of 76,532 protein–RNA pairs in 29.1 ms