Protein–RNA interactions for Protein: P09027

Hoxd3, Homeobox protein Hox-D3, mousemouse

Predictions only

Length 433 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hoxd3P09027 Arl5b-206ENSMUST00000193836 481 ntTSL 2 BASIC12.8□□□□□ -0.36
Hoxd3P09027 Gm18669-201ENSMUST00000216049 778 ntBASIC12.8□□□□□ -0.36
Hoxd3P09027 AC159205.3-201ENSMUST00000224614 874 ntBASIC12.8□□□□□ -0.36
Hoxd3P09027 AC107711.5-202ENSMUST00000226429 702 ntBASIC12.8□□□□□ -0.36
Hoxd3P09027 Hist1h2ba-201ENSMUST00000052776 384 ntAPPRIS P1 BASIC12.8□□□□□ -0.36
Hoxd3P09027 Sptbn4-202ENSMUST00000108362 4861 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
Hoxd3P09027 Fosl2-201ENSMUST00000031017 6537 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Hoxd3P09027 Fbxo33-201ENSMUST00000043204 3688 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Hoxd3P09027 Myo9b-206ENSMUST00000212935 6316 ntAPPRIS ALT2 TSL 5 BASIC12.8□□□□□ -0.36
Hoxd3P09027 Ncoa5-201ENSMUST00000040381 3179 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Hoxd3P09027 Gxylt2-201ENSMUST00000032157 7658 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Hoxd3P09027 Gm16863-201ENSMUST00000181476 2431 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
Hoxd3P09027 Kif5b-201ENSMUST00000025083 6032 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Hoxd3P09027 Arhgef9-216ENSMUST00000197206 2227 ntTSL 5 BASIC12.8□□□□□ -0.36
Hoxd3P09027 Scly-201ENSMUST00000027532 2202 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
Hoxd3P09027 Gnb1-203ENSMUST00000165335 3143 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Hoxd3P09027 Eral1-201ENSMUST00000021183 2014 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Hoxd3P09027 Spats2l-212ENSMUST00000170139 2315 ntAPPRIS P1 TSL 5 BASIC12.79□□□□□ -0.36
Hoxd3P09027 Prdm6-201ENSMUST00000091900 2601 ntAPPRIS P2 TSL 1 (best) BASIC12.79□□□□□ -0.36
Hoxd3P09027 Iars2-201ENSMUST00000027921 5471 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Hoxd3P09027 Fmr1-205ENSMUST00000114656 4257 ntTSL 5 BASIC12.79□□□□□ -0.36
Hoxd3P09027 Taf6l-201ENSMUST00000003777 1869 ntTSL 5 BASIC12.79□□□□□ -0.36
Hoxd3P09027 Mpped2-202ENSMUST00000111063 2848 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Hoxd3P09027 Zfp264-201ENSMUST00000208656 1563 ntBASIC12.79□□□□□ -0.36
Hoxd3P09027 Eif4a2-201ENSMUST00000023599 2208 ntAPPRIS P3 TSL 1 (best) BASIC12.79□□□□□ -0.36
Hoxd3P09027 Gm16181-201ENSMUST00000118793 567 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Hoxd3P09027 Dohh-202ENSMUST00000121047 946 ntTSL 2 BASIC12.79□□□□□ -0.36
Hoxd3P09027 Gm16295-201ENSMUST00000139512 643 ntTSL 3 BASIC12.79□□□□□ -0.36
Hoxd3P09027 Gm20498-202ENSMUST00000164386 1043 ntTSL 2 BASIC12.79□□□□□ -0.36
Hoxd3P09027 Lce1k-201ENSMUST00000179917 663 ntAPPRIS P1 TSL 2 BASIC12.79□□□□□ -0.36
Hoxd3P09027 Acsl3-205ENSMUST00000142704 2976 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Hoxd3P09027 Gabpa-201ENSMUST00000009120 4987 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Hoxd3P09027 Ankra2-203ENSMUST00000123924 2328 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
Hoxd3P09027 Hspb6-201ENSMUST00000044048 1363 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Hoxd3P09027 Blmh-201ENSMUST00000021197 2497 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Hoxd3P09027 Mfsd4b3-201ENSMUST00000095749 1787 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Hoxd3P09027 Clip2-202ENSMUST00000100647 4994 ntAPPRIS P4 TSL 1 (best) BASIC12.79□□□□□ -0.36
Hoxd3P09027 Acss2-202ENSMUST00000065973 2876 ntTSL 1 (best) BASIC12.79□□□□□ -0.36
Hoxd3P09027 Map3k7-201ENSMUST00000037607 5773 ntAPPRIS ALT1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Hoxd3P09027 Rims3-201ENSMUST00000071093 6505 ntAPPRIS P1 TSL 1 (best) BASIC12.79□□□□□ -0.36
Hoxd3P09027 Zdhhc24-201ENSMUST00000006632 2558 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Hoxd3P09027 Urgcp-206ENSMUST00000170116 5528 ntAPPRIS ALT2 TSL 5 BASIC12.78□□□□□ -0.36
Hoxd3P09027 8030462N17Rik-201ENSMUST00000074653 3418 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Hoxd3P09027 Gbx1-201ENSMUST00000088311 3475 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Hoxd3P09027 C130026I21Rik-201ENSMUST00000064341 1561 ntAPPRIS P3 TSL 1 (best) BASIC12.78□□□□□ -0.36
Hoxd3P09027 Lrrc43-202ENSMUST00000121444 2016 ntAPPRIS ALT2 TSL 1 (best) BASIC12.78□□□□□ -0.36
Hoxd3P09027 Atp6v1c1-201ENSMUST00000022904 2071 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Hoxd3P09027 Proser2-201ENSMUST00000054254 2061 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Hoxd3P09027 Fhl3-201ENSMUST00000038684 1664 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
Hoxd3P09027 Tpm2-203ENSMUST00000107914 1164 ntAPPRIS ALT1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Hoxd3P09027 H2-Q6-201ENSMUST00000113879 981 ntAPPRIS P1 TSL 2 BASIC12.78□□□□□ -0.36
Hoxd3P09027 Pld6-202ENSMUST00000125307 948 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Hoxd3P09027 Hotairm1-202ENSMUST00000132559 713 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
Hoxd3P09027 Smim12-201ENSMUST00000142029 1022 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Hoxd3P09027 Pqlc1-208ENSMUST00000144468 1050 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
Hoxd3P09027 Gm17092-201ENSMUST00000166606 698 ntTSL 2 BASIC12.78□□□□□ -0.36
Hoxd3P09027 Gm27357-201ENSMUST00000183754 135 ntBASIC12.78□□□□□ -0.36
Hoxd3P09027 Gm37102-201ENSMUST00000195740 1105 ntBASIC12.78□□□□□ -0.36
Hoxd3P09027 Srrd-201ENSMUST00000031289 1110 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Hoxd3P09027 Prm2-201ENSMUST00000037996 621 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Hoxd3P09027 Tmem270-201ENSMUST00000047305 932 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
Hoxd3P09027 2810468N07Rik-201ENSMUST00000163493 1349 ntTSL 1 (best) BASIC12.78□□□□□ -0.36
Hoxd3P09027 Gpsm3-201ENSMUST00000038244 1343 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Hoxd3P09027 Adam33-201ENSMUST00000052104 2795 ntAPPRIS ALT2 TSL 1 (best) BASIC12.78□□□□□ -0.36
Hoxd3P09027 Dvl3-204ENSMUST00000171774 2319 ntTSL 5 BASIC12.78□□□□□ -0.36
Hoxd3P09027 Yipf2-202ENSMUST00000078572 1894 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Hoxd3P09027 Gfra2-202ENSMUST00000227633 1480 ntBASIC12.78□□□□□ -0.36
Hoxd3P09027 Rnf26-208ENSMUST00000185479 2964 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Hoxd3P09027 Casp3-201ENSMUST00000093517 1520 ntAPPRIS P1 TSL 1 (best) BASIC12.78□□□□□ -0.36
Hoxd3P09027 Tmem57-201ENSMUST00000030628 3826 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.36
Hoxd3P09027 Xpr1-202ENSMUST00000111774 2753 ntTSL 1 (best) BASIC12.77□□□□□ -0.36
Hoxd3P09027 B4galt3-205ENSMUST00000126699 1758 ntTSL 5 BASIC12.77□□□□□ -0.36
Hoxd3P09027 Rad23a-202ENSMUST00000109761 1842 ntAPPRIS ALT1 TSL 1 (best) BASIC12.77□□□□□ -0.37
Hoxd3P09027 Sult2b1-204ENSMUST00000209739 1858 ntAPPRIS ALT2 TSL 5 BASIC12.77□□□□□ -0.37
Hoxd3P09027 Prss8-201ENSMUST00000032988 1852 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
Hoxd3P09027 Zkscan8-202ENSMUST00000110481 728 ntTSL 2 BASIC12.77□□□□□ -0.37
Hoxd3P09027 2310009B15Rik-201ENSMUST00000112025 565 ntAPPRIS P1 TSL 2 BASIC12.77□□□□□ -0.37
Hoxd3P09027 Gm26620-201ENSMUST00000180542 817 ntAPPRIS P1 BASIC12.77□□□□□ -0.37
Hoxd3P09027 Jagn1-202ENSMUST00000204254 1147 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
Hoxd3P09027 Gm44711-201ENSMUST00000205414 1264 ntBASIC12.77□□□□□ -0.37
Hoxd3P09027 Ifi27l2b-201ENSMUST00000044687 1093 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
Hoxd3P09027 Spem1-201ENSMUST00000045771 1041 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
Hoxd3P09027 Gmnn-201ENSMUST00000006898 1127 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
Hoxd3P09027 Syt9-201ENSMUST00000073459 3817 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
Hoxd3P09027 Pdgfa-202ENSMUST00000076095 2060 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
Hoxd3P09027 Tmem241-205ENSMUST00000209859 1426 ntAPPRIS P4 TSL 1 (best) BASIC12.77□□□□□ -0.37
Hoxd3P09027 A430057M04Rik-202ENSMUST00000170150 2176 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
Hoxd3P09027 Gm45244-201ENSMUST00000211328 2200 ntBASIC12.77□□□□□ -0.37
Hoxd3P09027 Nsun5-201ENSMUST00000000940 2243 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
Hoxd3P09027 Rmdn3-201ENSMUST00000094695 2249 ntAPPRIS P1 TSL 1 (best) BASIC12.77□□□□□ -0.37
Hoxd3P09027 Zkscan4-202ENSMUST00000225845 1506 ntBASIC12.77□□□□□ -0.37
Hoxd3P09027 Cdk9-202ENSMUST00000120105 1565 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
Hoxd3P09027 Celf3-208ENSMUST00000198316 2505 ntTSL 1 (best) BASIC12.77□□□□□ -0.37
Hoxd3P09027 Cul4a-201ENSMUST00000016680 3728 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Hoxd3P09027 Gm16638-201ENSMUST00000148687 1865 ntTSL 1 (best) BASIC12.76□□□□□ -0.37
Hoxd3P09027 Isl2-201ENSMUST00000034869 1854 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Hoxd3P09027 Cyfip2-205ENSMUST00000165599 6659 ntAPPRIS P1 TSL 1 (best) BASIC12.76□□□□□ -0.37
Hoxd3P09027 Bcar1-201ENSMUST00000166232 3142 ntAPPRIS P3 TSL 1 (best) BASIC12.76□□□□□ -0.37
Hoxd3P09027 Trip10-205ENSMUST00000224885 2136 ntAPPRIS ALT2 BASIC12.76□□□□□ -0.37
Hoxd3P09027 Adrb2-201ENSMUST00000053640 2143 ntAPPRIS P1 BASIC12.76□□□□□ -0.37
Retrieved 100 of 76,532 protein–RNA pairs in 67.7 ms