Protein–RNA interactions for Protein: P08121

Col3a1, Collagen alpha-1(III) chain, mousemouse

Predictions only

Length 1,464 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col3a1P08121 Olfr1272-201ENSMUST00000099750 927 ntAPPRIS P1 BASIC19.56■□□□□ 0.72
Col3a1P08121 Tbxas1-201ENSMUST00000003017 1990 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Col3a1P08121 Dus3l-201ENSMUST00000007747 2303 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Col3a1P08121 Ggnbp2-201ENSMUST00000018547 2478 ntTSL 5 BASIC19.56■□□□□ 0.72
Col3a1P08121 Rhof-201ENSMUST00000031401 2208 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Col3a1P08121 Slc25a39-201ENSMUST00000018821 1685 ntAPPRIS P2 TSL 1 (best) BASIC19.56■□□□□ 0.72
Col3a1P08121 Col23a1-201ENSMUST00000102765 5658 ntAPPRIS P1 TSL 5 BASIC19.55■□□□□ 0.72
Col3a1P08121 Agk-201ENSMUST00000031977 2531 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Col3a1P08121 Olah-202ENSMUST00000115087 1479 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Col3a1P08121 Gnas-222ENSMUST00000180362 1645 ntTSL 5 BASIC19.55■□□□□ 0.72
Col3a1P08121 1700023H06Rik-201ENSMUST00000161006 1044 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
Col3a1P08121 Gm26756-201ENSMUST00000181689 1294 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
Col3a1P08121 Rpsa-ps1-201ENSMUST00000191040 886 ntBASIC19.55■□□□□ 0.72
Col3a1P08121 Gm6089-201ENSMUST00000197666 938 ntBASIC19.55■□□□□ 0.72
Col3a1P08121 Aqp12-201ENSMUST00000059676 1088 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Col3a1P08121 Acyp2-201ENSMUST00000074613 863 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Col3a1P08121 Col13a1-204ENSMUST00000105453 2935 ntTSL 2 BASIC19.55■□□□□ 0.72
Col3a1P08121 Rab37-202ENSMUST00000067754 2577 ntAPPRIS ALT2 TSL 1 (best) BASIC19.55■□□□□ 0.72
Col3a1P08121 Gstm4-201ENSMUST00000029489 1707 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Col3a1P08121 Lonp2-201ENSMUST00000034141 2860 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Col3a1P08121 Dtd1-201ENSMUST00000028917 1350 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Col3a1P08121 Pigz-201ENSMUST00000052174 2184 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Col3a1P08121 Gm26526-201ENSMUST00000181075 2927 ntTSL 5 BASIC19.55■□□□□ 0.72
Col3a1P08121 Ammecr1-201ENSMUST00000041317 5437 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Col3a1P08121 Pofut2-201ENSMUST00000020493 2290 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Col3a1P08121 Krt83-201ENSMUST00000023718 1756 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Col3a1P08121 Fam3a-203ENSMUST00000114139 931 ntTSL 5 BASIC19.54■□□□□ 0.72
Col3a1P08121 Gm1401-201ENSMUST00000122048 772 ntBASIC19.54■□□□□ 0.72
Col3a1P08121 4930570G19Rik-204ENSMUST00000149387 986 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
Col3a1P08121 Gm42802-201ENSMUST00000202475 456 ntTSL 2 BASIC19.54■□□□□ 0.72
Col3a1P08121 Lrr1-203ENSMUST00000222520 767 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
Col3a1P08121 Il3ra-205ENSMUST00000224877 1128 ntAPPRIS ALT2 BASIC19.54■□□□□ 0.72
Col3a1P08121 Tubb4b-201ENSMUST00000043584 1598 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Col3a1P08121 Tuba1c-201ENSMUST00000058914 1977 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Col3a1P08121 Aptx-203ENSMUST00000108103 2391 ntAPPRIS ALT2 TSL 5 BASIC19.54■□□□□ 0.72
Col3a1P08121 9530059O14Rik-202ENSMUST00000181682 2093 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
Col3a1P08121 4930512B01Rik-201ENSMUST00000021378 1856 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
Col3a1P08121 Fam155a-206ENSMUST00000208933 1569 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
Col3a1P08121 Pqlc1-202ENSMUST00000091798 1989 ntAPPRIS P3 TSL 5 BASIC19.54■□□□□ 0.72
Col3a1P08121 Bean1-201ENSMUST00000093245 3199 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
Col3a1P08121 Sf1-202ENSMUST00000113487 2649 ntAPPRIS ALT1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Col3a1P08121 Urah-204ENSMUST00000185612 716 ntAPPRIS P3 TSL 3 BASIC19.54■□□□□ 0.72
Col3a1P08121 Gm20383-201ENSMUST00000203799 1227 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
Col3a1P08121 Urah-207ENSMUST00000211372 688 ntAPPRIS P3 TSL 2 BASIC19.54■□□□□ 0.72
Col3a1P08121 Urah-201ENSMUST00000026554 890 ntAPPRIS P3 TSL 1 (best) BASIC19.54■□□□□ 0.72
Col3a1P08121 Hacd1-201ENSMUST00000074854 926 ntAPPRIS P1 TSL 5 BASIC19.54■□□□□ 0.72
Col3a1P08121 Letm1-203ENSMUST00000148451 2478 ntTSL 2 BASIC19.54■□□□□ 0.72
Col3a1P08121 Abcd4-201ENSMUST00000021666 2309 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Col3a1P08121 Ppif-201ENSMUST00000022419 1549 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Col3a1P08121 Dvl2-201ENSMUST00000019362 2968 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Col3a1P08121 Ppil3-204ENSMUST00000117069 1363 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Col3a1P08121 Tmem116-203ENSMUST00000094357 1366 ntAPPRIS ALT2 TSL 5 BASIC19.53■□□□□ 0.72
Col3a1P08121 Foxa3-201ENSMUST00000036018 2037 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Col3a1P08121 Fiz1-202ENSMUST00000165320 2653 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Col3a1P08121 Krt6a-201ENSMUST00000023788 2256 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Col3a1P08121 Tfdp2-206ENSMUST00000185644 2646 ntAPPRIS P3 TSL 1 (best) BASIC19.53■□□□□ 0.72
Col3a1P08121 Tcp11-202ENSMUST00000043925 1746 ntAPPRIS ALT2 TSL 5 BASIC19.53■□□□□ 0.72
Col3a1P08121 Gm10505-201ENSMUST00000151398 1587 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
Col3a1P08121 Prlhr-201ENSMUST00000051277 1572 ntAPPRIS P1 BASIC19.53■□□□□ 0.72
Col3a1P08121 Sh2b1-203ENSMUST00000205440 3089 ntAPPRIS ALT2 TSL 1 (best) BASIC19.53■□□□□ 0.72
Col3a1P08121 Vegfa-201ENSMUST00000024747 2765 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
Col3a1P08121 Gm11906-201ENSMUST00000124792 680 ntTSL 5 BASIC19.53■□□□□ 0.72
Col3a1P08121 Gm11750-201ENSMUST00000146016 583 ntTSL 5 BASIC19.53■□□□□ 0.72
Col3a1P08121 Ubl5-204ENSMUST00000160682 489 ntAPPRIS P1 TSL 5 BASIC19.53■□□□□ 0.72
Col3a1P08121 Tmem176a-202ENSMUST00000168406 1086 ntAPPRIS P1 TSL 3 BASIC19.53■□□□□ 0.72
Col3a1P08121 Timm23-206ENSMUST00000170331 777 ntTSL 3 BASIC19.53■□□□□ 0.72
Col3a1P08121 Gm27217-201ENSMUST00000183438 882 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
Col3a1P08121 1700012D14Rik-201ENSMUST00000209597 605 ntTSL 3 BASIC19.53■□□□□ 0.72
Col3a1P08121 AL669916.2-201ENSMUST00000213219 358 ntTSL 2 BASIC19.53■□□□□ 0.72
Col3a1P08121 AC154757.1-201ENSMUST00000228289 336 ntBASIC19.53■□□□□ 0.72
Col3a1P08121 Mrpl34-201ENSMUST00000048914 607 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Col3a1P08121 Bhlha9-201ENSMUST00000056184 1207 ntAPPRIS P1 BASIC19.53■□□□□ 0.72
Col3a1P08121 Armc10-202ENSMUST00000095495 2700 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
Col3a1P08121 Brd1-201ENSMUST00000088911 4702 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
Col3a1P08121 Smarcad1-201ENSMUST00000031984 5168 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Col3a1P08121 Ccnl1-201ENSMUST00000029416 2169 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
Col3a1P08121 Parg-208ENSMUST00000170840 2894 ntAPPRIS ALT2 TSL 5 BASIC19.52■□□□□ 0.72
Col3a1P08121 Stradb-201ENSMUST00000027185 2960 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
Col3a1P08121 Trim31-201ENSMUST00000078438 2257 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
Col3a1P08121 Hspa8-201ENSMUST00000015800 2394 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
Col3a1P08121 Mid1ip1-202ENSMUST00000115524 2022 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
Col3a1P08121 Sema6c-214ENSMUST00000202315 2843 ntAPPRIS P3 TSL 1 (best) BASIC19.52■□□□□ 0.72
Col3a1P08121 Fam72a-201ENSMUST00000068613 2191 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
Col3a1P08121 Pak1ip1-201ENSMUST00000046951 1722 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
Col3a1P08121 Gm21586-201ENSMUST00000107988 264 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
Col3a1P08121 Gm21953-201ENSMUST00000108002 264 ntAPPRIS P1 TSL 5 BASIC19.52■□□□□ 0.72
Col3a1P08121 Tmem141-205ENSMUST00000142087 795 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
Col3a1P08121 Gm15492-201ENSMUST00000156734 606 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
Col3a1P08121 Gm20878-208ENSMUST00000181518 264 ntAPPRIS P2 TSL 1 (best) BASIC19.52■□□□□ 0.72
Col3a1P08121 Atp2b2-208ENSMUST00000205052 5658 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
Col3a1P08121 Gm29455-202ENSMUST00000186697 1369 ntTSL 1 (best) BASIC19.52■□□□□ 0.71
Col3a1P08121 Neo1-202ENSMUST00000214547 5414 ntAPPRIS ALT2 TSL 1 (best) BASIC19.52■□□□□ 0.71
Col3a1P08121 Rapgef1-201ENSMUST00000091146 6212 ntAPPRIS ALT2 TSL 1 (best) BASIC19.52■□□□□ 0.71
Col3a1P08121 Hs3st1-201ENSMUST00000053116 1684 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
Col3a1P08121 Coq6-202ENSMUST00000110276 1776 ntAPPRIS P2 TSL 5 BASIC19.52■□□□□ 0.71
Col3a1P08121 Nsmf-201ENSMUST00000006646 2922 ntAPPRIS P3 TSL 1 (best) BASIC19.51■□□□□ 0.71
Col3a1P08121 Hpn-201ENSMUST00000039435 1743 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
Col3a1P08121 Tmem8-201ENSMUST00000025010 3464 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Col3a1P08121 Sec22b-202ENSMUST00000122288 1177 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
Col3a1P08121 Nat8b-ps-201ENSMUST00000162660 699 ntBASIC19.51■□□□□ 0.71
Retrieved 100 of 76,532 protein–RNA pairs in 16.9 ms