Protein–RNA interactions for Protein: O88609

Lmx1b, LIM homeobox transcription factor 1-beta, mousemouse

Predictions only

Length 395 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lmx1bO88609 Arl5b-206ENSMUST00000193836 481 ntTSL 2 BASIC14.9□□□□□ -0.02
Lmx1bO88609 Stard3nl-208ENSMUST00000200323 1128 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
Lmx1bO88609 Stk33-201ENSMUST00000090414 2221 ntAPPRIS P1 TSL 5 BASIC14.9□□□□□ -0.02
Lmx1bO88609 Gnaz-201ENSMUST00000037813 3519 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Lmx1bO88609 Gm20628-201ENSMUST00000177363 3215 ntBASIC14.9□□□□□ -0.02
Lmx1bO88609 Ykt6-201ENSMUST00000002818 2541 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Lmx1bO88609 Gas6-201ENSMUST00000033828 2548 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Lmx1bO88609 Nfe2l3-201ENSMUST00000005103 2544 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Lmx1bO88609 Nmnat3-201ENSMUST00000112935 2166 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Lmx1bO88609 Cdk17-201ENSMUST00000069965 3615 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Lmx1bO88609 Rsph3a-201ENSMUST00000097423 2189 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Lmx1bO88609 Hnrnpll-205ENSMUST00000184635 3009 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Lmx1bO88609 Pid1-201ENSMUST00000168574 2664 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Lmx1bO88609 Zfp326-201ENSMUST00000031227 2667 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Lmx1bO88609 Tfap2a-209ENSMUST00000225180 1828 ntBASIC14.89□□□□□ -0.03
Lmx1bO88609 Ccdc184-201ENSMUST00000031914 2329 ntAPPRIS P1 BASIC14.89□□□□□ -0.03
Lmx1bO88609 Txndc11-201ENSMUST00000038424 3095 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Lmx1bO88609 Rnf146-202ENSMUST00000160144 4323 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Lmx1bO88609 Klhl31-201ENSMUST00000057781 6494 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Lmx1bO88609 Pla2g2c-201ENSMUST00000030530 1618 ntAPPRIS P1 TSL 3 BASIC14.89□□□□□ -0.03
Lmx1bO88609 Wdr86-201ENSMUST00000068693 2364 ntAPPRIS P1 TSL 2 BASIC14.89□□□□□ -0.03
Lmx1bO88609 Snx16-201ENSMUST00000029047 2288 ntAPPRIS P3 TSL 1 (best) BASIC14.89□□□□□ -0.03
Lmx1bO88609 Zfp655-206ENSMUST00000200039 1765 ntAPPRIS ALT1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Lmx1bO88609 Cul1-201ENSMUST00000031697 3161 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Lmx1bO88609 Gm19553-201ENSMUST00000175723 494 ntTSL 5 BASIC14.89□□□□□ -0.03
Lmx1bO88609 Bvht-202ENSMUST00000183087 588 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
Lmx1bO88609 Gm18115-201ENSMUST00000221209 621 ntBASIC14.89□□□□□ -0.03
Lmx1bO88609 Tmem57-201ENSMUST00000030628 3826 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Lmx1bO88609 Cebpzos-201ENSMUST00000063817 753 ntAPPRIS P1 TSL 2 BASIC14.89□□□□□ -0.03
Lmx1bO88609 Bmt2-202ENSMUST00000203078 4462 ntAPPRIS ALT2 TSL 1 (best) BASIC14.89□□□□□ -0.03
Lmx1bO88609 Hand1-201ENSMUST00000036917 1904 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Lmx1bO88609 Matr3-214ENSMUST00000190029 2845 ntAPPRIS P1 TSL 5 BASIC14.89□□□□□ -0.03
Lmx1bO88609 Fgf17-201ENSMUST00000022697 1689 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Lmx1bO88609 Rpf1-201ENSMUST00000029838 1661 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Lmx1bO88609 Bnipl-201ENSMUST00000098871 1414 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
Lmx1bO88609 Csk-201ENSMUST00000034863 2749 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Lmx1bO88609 Slc6a8-204ENSMUST00000114467 2509 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Lmx1bO88609 Iqsec2-203ENSMUST00000112605 6017 ntAPPRIS ALT2 TSL 5 BASIC14.89□□□□□ -0.03
Lmx1bO88609 Taf6l-201ENSMUST00000003777 1869 ntTSL 5 BASIC14.89□□□□□ -0.03
Lmx1bO88609 Slc25a23-201ENSMUST00000040280 3362 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Lmx1bO88609 Fdxr-201ENSMUST00000021078 1948 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Lmx1bO88609 Bicdl1-201ENSMUST00000055408 3026 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Lmx1bO88609 Haglr-201ENSMUST00000100000 2085 ntBASIC14.88□□□□□ -0.03
Lmx1bO88609 A830073O21Rik-202ENSMUST00000205693 3096 ntBASIC14.88□□□□□ -0.03
Lmx1bO88609 Zmynd19-201ENSMUST00000028350 3903 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Lmx1bO88609 Gm11620-201ENSMUST00000118770 1845 ntBASIC14.88□□□□□ -0.03
Lmx1bO88609 Slc29a1-202ENSMUST00000064889 1988 ntAPPRIS P3 TSL 1 (best) BASIC14.88□□□□□ -0.03
Lmx1bO88609 Naa10-204ENSMUST00000114389 1031 ntAPPRIS ALT2 TSL 1 (best) BASIC14.88□□□□□ -0.03
Lmx1bO88609 Mpv17l-205ENSMUST00000143697 580 ntTSL 2 BASIC14.88□□□□□ -0.03
Lmx1bO88609 Stambp-206ENSMUST00000206400 2144 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Lmx1bO88609 Pgpep1-208ENSMUST00000211715 676 ntTSL 3 BASIC14.88□□□□□ -0.03
Lmx1bO88609 Gm35154-202ENSMUST00000217008 1093 ntTSL 5 BASIC14.88□□□□□ -0.03
Lmx1bO88609 Tomm22-201ENSMUST00000023062 1031 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Lmx1bO88609 Atg101-201ENSMUST00000048393 1230 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Lmx1bO88609 Exosc5-201ENSMUST00000079634 1020 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Lmx1bO88609 Madcam1-201ENSMUST00000020554 1436 ntAPPRIS P2 TSL 1 (best) BASIC14.88□□□□□ -0.03
Lmx1bO88609 Spdef-205ENSMUST00000167489 1708 ntAPPRIS P1 TSL 5 BASIC14.88□□□□□ -0.03
Lmx1bO88609 Abcb10-201ENSMUST00000075578 4306 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Lmx1bO88609 Gm27029-201ENSMUST00000107257 1898 ntAPPRIS ALT2 TSL 5 BASIC14.88□□□□□ -0.03
Lmx1bO88609 Taok3-203ENSMUST00000111978 4467 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Lmx1bO88609 Mid1ip1-201ENSMUST00000008179 2019 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Lmx1bO88609 Gm14029-201ENSMUST00000151051 1348 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
Lmx1bO88609 Tubgcp4-203ENSMUST00000110658 4250 ntAPPRIS ALT1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Lmx1bO88609 Gm9917-202ENSMUST00000181099 1499 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
Lmx1bO88609 Gm26892-201ENSMUST00000181695 1636 ntTSL 5 BASIC14.88□□□□□ -0.03
Lmx1bO88609 Arhgef9-216ENSMUST00000197206 2227 ntTSL 5 BASIC14.88□□□□□ -0.03
Lmx1bO88609 Cadps2-212ENSMUST00000163871 4969 ntAPPRIS ALT2 TSL 5 BASIC14.87□□□□□ -0.03
Lmx1bO88609 Nsmf-207ENSMUST00000116574 2863 ntTSL 5 BASIC14.87□□□□□ -0.03
Lmx1bO88609 Fezf1-201ENSMUST00000031709 2409 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Lmx1bO88609 H2-D1-202ENSMUST00000172785 2102 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Lmx1bO88609 Dvl3-204ENSMUST00000171774 2319 ntTSL 5 BASIC14.87□□□□□ -0.03
Lmx1bO88609 Arhgef10-201ENSMUST00000084207 5528 ntAPPRIS P4 TSL 1 (best) BASIC14.87□□□□□ -0.03
Lmx1bO88609 H2-DMb1-201ENSMUST00000114232 1404 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Lmx1bO88609 Ccdc69-201ENSMUST00000055040 1402 ntAPPRIS P2 TSL 1 (best) BASIC14.87□□□□□ -0.03
Lmx1bO88609 Relb-201ENSMUST00000049912 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC14.87□□□□□ -0.03
Lmx1bO88609 Cldn7-204ENSMUST00000108597 913 ntAPPRIS P1 TSL 2 BASIC14.87□□□□□ -0.03
Lmx1bO88609 Alkal1-201ENSMUST00000133144 971 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Lmx1bO88609 Ighv6-1-201ENSMUST00000193612 343 ntBASIC14.87□□□□□ -0.03
Lmx1bO88609 Gm44450-201ENSMUST00000199528 114 ntBASIC14.87□□□□□ -0.03
Lmx1bO88609 Tmem128-201ENSMUST00000087511 1291 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Lmx1bO88609 Ahnak-201ENSMUST00000092955 1046 ntAPPRIS ALT2 TSL 2 BASIC14.87□□□□□ -0.03
Lmx1bO88609 Gsk3b-201ENSMUST00000023507 8303 ntAPPRIS P3 TSL 1 (best) BASIC14.87□□□□□ -0.03
Lmx1bO88609 Nploc4-202ENSMUST00000103017 4025 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
Lmx1bO88609 Dusp4-201ENSMUST00000033930 2740 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Lmx1bO88609 Wdr41-205ENSMUST00000160801 3062 ntAPPRIS P1 TSL 5 BASIC14.86□□□□□ -0.03
Lmx1bO88609 Wdr41-201ENSMUST00000056512 3063 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Lmx1bO88609 Dtx2-201ENSMUST00000005072 2562 ntAPPRIS P3 TSL 1 (best) BASIC14.86□□□□□ -0.03
Lmx1bO88609 Nploc4-201ENSMUST00000044271 4121 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Lmx1bO88609 Kcmf1-201ENSMUST00000068697 3251 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Lmx1bO88609 Kcnk4-201ENSMUST00000025908 1715 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Lmx1bO88609 Gpr137b-201ENSMUST00000021738 2971 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Lmx1bO88609 Sh2b1-202ENSMUST00000205340 3366 ntAPPRIS ALT2 TSL 1 (best) BASIC14.86□□□□□ -0.03
Lmx1bO88609 Aipl1-201ENSMUST00000048207 2309 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Lmx1bO88609 Hyls1-201ENSMUST00000115110 1973 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Lmx1bO88609 Tfpt-202ENSMUST00000108641 1166 ntAPPRIS ALT2 TSL 1 (best) BASIC14.86□□□□□ -0.03
Lmx1bO88609 Gm18421-201ENSMUST00000204122 625 ntBASIC14.86□□□□□ -0.03
Lmx1bO88609 Umpk-ps-201ENSMUST00000211897 827 ntBASIC14.86□□□□□ -0.03
Lmx1bO88609 Prm2-201ENSMUST00000037996 621 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Lmx1bO88609 Gm7461-201ENSMUST00000058918 827 ntBASIC14.86□□□□□ -0.03
Lmx1bO88609 Atp6v1c1-201ENSMUST00000022904 2071 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Retrieved 100 of 76,532 protein–RNA pairs in 57.7 ms