Protein–RNA interactions for Protein: Q9Y4P1

ATG4B, Cysteine protease ATG4B, humanhuman

Predictions only

Length 393 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4BQ9Y4P1 AC026888.1-201ENST00000553348 559 ntTSL 4 BASIC3.71□□□□□ -1.82
ATG4BQ9Y4P1 TIMM9-203ENST00000555061 598 ntAPPRIS P1 TSL 1 (best) BASIC3.71□□□□□ -1.82
ATG4BQ9Y4P1 TIMM9-206ENST00000555593 796 ntAPPRIS P1 TSL 1 (best) BASIC3.71□□□□□ -1.82
ATG4BQ9Y4P1 YWHAZP1-201ENST00000556286 722 ntBASIC3.71□□□□□ -1.82
ATG4BQ9Y4P1 AC106785.1-201ENST00000565935 262 ntBASIC3.71□□□□□ -1.82
ATG4BQ9Y4P1 MIR4504-201ENST00000577413 92 ntBASIC3.71□□□□□ -1.82
ATG4BQ9Y4P1 AC022916.3-201ENST00000592961 742 ntBASIC3.71□□□□□ -1.82
ATG4BQ9Y4P1 AL590235.2-201ENST00000602641 632 ntTSL 5 BASIC3.71□□□□□ -1.82
ATG4BQ9Y4P1 MRPS35P3-201ENST00000603189 709 ntBASIC3.71□□□□□ -1.82
ATG4BQ9Y4P1 IGKV1OR2-118-201ENST00000603238 347 ntBASIC3.71□□□□□ -1.82
ATG4BQ9Y4P1 HMGB1P50-201ENST00000605814 607 ntBASIC3.71□□□□□ -1.82
ATG4BQ9Y4P1 AP002802.2-201ENST00000605877 235 ntBASIC3.71□□□□□ -1.82
ATG4BQ9Y4P1 AL008729.1-201ENST00000606627 553 ntTSL 4 BASIC3.71□□□□□ -1.82
ATG4BQ9Y4P1 TMEM212-205ENST00000619900 585 ntAPPRIS P1 TSL 3 BASIC3.71□□□□□ -1.82
ATG4BQ9Y4P1 AC007527.2-201ENST00000621825 546 ntTSL 5 BASIC3.71□□□□□ -1.82
ATG4BQ9Y4P1 MIR6500-201ENST00000622700 86 ntBASIC3.71□□□□□ -1.82
ATG4BQ9Y4P1 CACNB4-260ENST00000637762 3800 ntTSL 5 BASIC3.71□□□□□ -1.82
ATG4BQ9Y4P1 UBE3AP2-201ENST00000429033 2259 ntBASIC3.7□□□□□ -1.82
ATG4BQ9Y4P1 LINC02431-201ENST00000503929 3601 ntTSL 1 (best) BASIC3.7□□□□□ -1.82
ATG4BQ9Y4P1 LINC01021-204ENST00000512067 1610 ntTSL 1 (best) BASIC3.7□□□□□ -1.82
ATG4BQ9Y4P1 THOC1-221ENST00000631280 2011 ntTSL 5 BASIC3.7□□□□□ -1.82
ATG4BQ9Y4P1 MBD5-212ENST00000627651 5610 ntTSL 5 BASIC3.7□□□□□ -1.82
ATG4BQ9Y4P1 LRMP-201ENST00000354454 2504 ntAPPRIS P2 TSL 1 (best) BASIC3.7□□□□□ -1.82
ATG4BQ9Y4P1 AL499616.1-201ENST00000415437 2633 ntTSL 2 BASIC3.7□□□□□ -1.82
ATG4BQ9Y4P1 IPO8P1-201ENST00000455509 3109 ntBASIC3.7□□□□□ -1.82
ATG4BQ9Y4P1 KCNT2-206ENST00000609185 3622 ntTSL 1 (best) BASIC3.7□□□□□ -1.82
ATG4BQ9Y4P1 DEFB129-201ENST00000246105 698 ntAPPRIS P1 TSL 1 (best) BASIC3.7□□□□□ -1.82
ATG4BQ9Y4P1 NTS-201ENST00000256010 1237 ntAPPRIS P1 TSL 1 (best) BASIC3.7□□□□□ -1.82
ATG4BQ9Y4P1 CAPZA3-201ENST00000317658 1087 ntAPPRIS P1 BASIC3.7□□□□□ -1.82
ATG4BQ9Y4P1 NAMPT-202ENST00000354289 1213 ntTSL 1 (best) BASIC3.7□□□□□ -1.82
ATG4BQ9Y4P1 MFAP5-202ENST00000396549 1195 ntTSL 2 BASIC3.7□□□□□ -1.82
ATG4BQ9Y4P1 Z97055.1-201ENST00000419730 712 ntBASIC3.7□□□□□ -1.82
ATG4BQ9Y4P1 AC092647.1-201ENST00000420654 287 ntBASIC3.7□□□□□ -1.82
ATG4BQ9Y4P1 AC104777.1-203ENST00000423428 554 ntTSL 3 BASIC3.7□□□□□ -1.82
ATG4BQ9Y4P1 ANKRD10-IT1-201ENST00000426991 800 ntTSL 2 BASIC3.7□□□□□ -1.82
ATG4BQ9Y4P1 OR51AB1P-201ENST00000429046 620 ntBASIC3.7□□□□□ -1.82
ATG4BQ9Y4P1 AC092839.2-201ENST00000431130 377 ntTSL 3 BASIC3.7□□□□□ -1.82
ATG4BQ9Y4P1 HSFY7P-201ENST00000432672 318 ntBASIC3.7□□□□□ -1.82
ATG4BQ9Y4P1 MTCYBP15-201ENST00000433123 1127 ntBASIC3.7□□□□□ -1.82
ATG4BQ9Y4P1 KCTD10P1-201ENST00000434203 625 ntBASIC3.7□□□□□ -1.82
ATG4BQ9Y4P1 USP9YP7-201ENST00000436723 430 ntBASIC3.7□□□□□ -1.82
ATG4BQ9Y4P1 HSFY8P-201ENST00000437934 318 ntBASIC3.7□□□□□ -1.82
ATG4BQ9Y4P1 CLEC5A-202ENST00000438351 743 ntTSL 3 BASIC3.7□□□□□ -1.82
ATG4BQ9Y4P1 AL161725.2-201ENST00000442442 403 ntTSL 3 BASIC3.7□□□□□ -1.82
ATG4BQ9Y4P1 RPS17P13-201ENST00000448974 407 ntBASIC3.7□□□□□ -1.82
ATG4BQ9Y4P1 AL354754.1-201ENST00000449730 625 ntTSL 3 BASIC3.7□□□□□ -1.82
ATG4BQ9Y4P1 Z99714.1-201ENST00000450463 807 ntBASIC3.7□□□□□ -1.82
ATG4BQ9Y4P1 USP9YP32-201ENST00000452432 430 ntBASIC3.7□□□□□ -1.82
ATG4BQ9Y4P1 HSFY5P-201ENST00000453726 309 ntBASIC3.7□□□□□ -1.82
ATG4BQ9Y4P1 PPIAP15-201ENST00000479662 484 ntBASIC3.7□□□□□ -1.82
ATG4BQ9Y4P1 GAPDHP36-201ENST00000480688 918 ntBASIC3.7□□□□□ -1.82
ATG4BQ9Y4P1 RPS3AP6-201ENST00000484430 795 ntBASIC3.7□□□□□ -1.82
ATG4BQ9Y4P1 VN1R105P-201ENST00000486595 910 ntBASIC3.7□□□□□ -1.82
ATG4BQ9Y4P1 AC005726.1-201ENST00000494679 427 ntBASIC3.7□□□□□ -1.82
ATG4BQ9Y4P1 MGAT4A-209ENST00000495056 683 ntTSL 2 BASIC3.7□□□□□ -1.82
ATG4BQ9Y4P1 AC092045.1-201ENST00000495716 1231 ntBASIC3.7□□□□□ -1.82
ATG4BQ9Y4P1 RPL5P23-201ENST00000496040 868 ntBASIC3.7□□□□□ -1.82
ATG4BQ9Y4P1 AC010460.1-201ENST00000507087 466 ntBASIC3.7□□□□□ -1.82
ATG4BQ9Y4P1 AC108866.1-202ENST00000511064 573 ntTSL 4 BASIC3.7□□□□□ -1.82
ATG4BQ9Y4P1 RNU4ATAC6P-201ENST00000516592 126 ntBASIC3.7□□□□□ -1.82
ATG4BQ9Y4P1 AC068672.1-201ENST00000520391 328 ntTSL 3 BASIC3.7□□□□□ -1.82
ATG4BQ9Y4P1 AP001992.1-204ENST00000525104 687 ntTSL 3 BASIC3.7□□□□□ -1.82
ATG4BQ9Y4P1 AC023442.3-203ENST00000530946 533 ntTSL 4 BASIC3.7□□□□□ -1.82
ATG4BQ9Y4P1 AP002370.2-203ENST00000533101 576 ntTSL 4 BASIC3.7□□□□□ -1.82
ATG4BQ9Y4P1 AC087623.1-201ENST00000533301 377 ntTSL 3 BASIC3.7□□□□□ -1.82
ATG4BQ9Y4P1 AP002989.1-201ENST00000533459 562 ntTSL 4 BASIC3.7□□□□□ -1.82
ATG4BQ9Y4P1 LINC02277-201ENST00000553386 453 ntTSL 2 BASIC3.7□□□□□ -1.82
ATG4BQ9Y4P1 LINC2194-201ENST00000567127 454 ntTSL 3 BASIC3.7□□□□□ -1.82
ATG4BQ9Y4P1 AC009101.1-201ENST00000568135 242 ntBASIC3.7□□□□□ -1.82
ATG4BQ9Y4P1 AC010547.3-201ENST00000569271 440 ntTSL 2 BASIC3.7□□□□□ -1.82
ATG4BQ9Y4P1 AC120057.2-201ENST00000571520 271 ntBASIC3.7□□□□□ -1.82
ATG4BQ9Y4P1 AC053481.4-201ENST00000583164 216 ntBASIC3.7□□□□□ -1.82
ATG4BQ9Y4P1 AC093227.2-201ENST00000589357 285 ntBASIC3.7□□□□□ -1.82
ATG4BQ9Y4P1 AP001542.2-201ENST00000593141 364 ntBASIC3.7□□□□□ -1.82
ATG4BQ9Y4P1 AC110741.2-201ENST00000605278 268 ntBASIC3.7□□□□□ -1.82
ATG4BQ9Y4P1 AC022306.3-201ENST00000619930 550 ntBASIC3.7□□□□□ -1.82
ATG4BQ9Y4P1 AC073530.2-201ENST00000623987 261 ntBASIC3.7□□□□□ -1.82
ATG4BQ9Y4P1 BX088723.1-201ENST00000637785 708 ntTSL 5 BASIC3.7□□□□□ -1.82
ATG4BQ9Y4P1 EMCN-209ENST00000511970 1377 ntAPPRIS ALT2 TSL 2 BASIC3.7□□□□□ -1.82
ATG4BQ9Y4P1 AC095050.2-201ENST00000510748 1458 ntBASIC3.7□□□□□ -1.82
ATG4BQ9Y4P1 TPTE2-201ENST00000255310 1562 ntTSL 5 BASIC3.7□□□□□ -1.82
ATG4BQ9Y4P1 FEZ2-201ENST00000305852 1782 ntTSL 5 BASIC3.7□□□□□ -1.82
ATG4BQ9Y4P1 RRAS2-202ENST00000414023 1884 ntTSL 2 BASIC3.7□□□□□ -1.82
ATG4BQ9Y4P1 OR12D1-207ENST00000514827 1712 ntAPPRIS P1 BASIC3.7□□□□□ -1.82
ATG4BQ9Y4P1 LRFN5-204ENST00000554171 4253 ntAPPRIS ALT2 TSL 1 (best) BASIC3.7□□□□□ -1.82
ATG4BQ9Y4P1 SEPT7P7-201ENST00000420492 1301 ntBASIC3.7□□□□□ -1.82
ATG4BQ9Y4P1 MTUS1-228ENST00000544260 3650 ntTSL 2 BASIC3.69□□□□□ -1.82
ATG4BQ9Y4P1 KCNJ16-209ENST00000589377 3684 ntAPPRIS P1 TSL 5 BASIC3.69□□□□□ -1.82
ATG4BQ9Y4P1 WNK3-202ENST00000375159 5403 ntAPPRIS P3 TSL 1 (best) BASIC3.69□□□□□ -1.82
ATG4BQ9Y4P1 C6orf10-209ENST00000612031 2179 ntAPPRIS ALT2 TSL 5 BASIC3.69□□□□□ -1.82
ATG4BQ9Y4P1 AC018555.1-201ENST00000567548 1980 ntBASIC3.69□□□□□ -1.82
ATG4BQ9Y4P1 CAPS2-206ENST00000409799 1859 ntTSL 1 (best) BASIC3.69□□□□□ -1.82
ATG4BQ9Y4P1 DDX60L-201ENST00000260184 6754 ntAPPRIS P1 TSL 5 BASIC3.69□□□□□ -1.82
ATG4BQ9Y4P1 LINC01625-201ENST00000454788 1690 ntTSL 2 BASIC3.69□□□□□ -1.82
ATG4BQ9Y4P1 AC004852.2-204ENST00000614137 1370 ntTSL 1 (best) BASIC3.69□□□□□ -1.82
ATG4BQ9Y4P1 OR1L1-201ENST00000309623 933 ntAPPRIS P1 BASIC3.69□□□□□ -1.82
ATG4BQ9Y4P1 RNU1-64P-201ENST00000365443 163 ntBASIC3.69□□□□□ -1.82
ATG4BQ9Y4P1 DNASE2B-202ENST00000370665 1269 ntAPPRIS P1 TSL 1 (best) BASIC3.69□□□□□ -1.82
ATG4BQ9Y4P1 OR1L1-202ENST00000373686 1083 ntBASIC3.69□□□□□ -1.82
ATG4BQ9Y4P1 TMEM225-201ENST00000375026 1107 ntAPPRIS P2 TSL 1 (best) BASIC3.69□□□□□ -1.82
Retrieved 100 of 98,524 protein–RNA pairs in 79.7 ms