Protein–RNA interactions for Protein: Q9R053

Scn11a, Sodium channel protein type 11 subunit alpha, mousemouse

Predictions only

Length 1,765 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn11aQ9R053 Gnas-222ENSMUST00000180362 1645 ntTSL 5 BASIC19.49■□□□□ 0.71
Scn11aQ9R053 4930512B01Rik-201ENSMUST00000021378 1856 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
Scn11aQ9R053 Nr4a1-201ENSMUST00000023779 2474 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Scn11aQ9R053 Fam46b-201ENSMUST00000051676 2287 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Scn11aQ9R053 Spata6-201ENSMUST00000038868 2466 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Scn11aQ9R053 Gm29455-202ENSMUST00000186697 1369 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
Scn11aQ9R053 Agbl5-215ENSMUST00000202060 3121 ntAPPRIS ALT2 TSL 1 (best) BASIC19.49■□□□□ 0.71
Scn11aQ9R053 Ppif-201ENSMUST00000022419 1549 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Scn11aQ9R053 Gm13036-201ENSMUST00000117799 748 ntBASIC19.49■□□□□ 0.71
Scn11aQ9R053 Gm15467-201ENSMUST00000120582 445 ntBASIC19.49■□□□□ 0.71
Scn11aQ9R053 1700039E22Rik-201ENSMUST00000174082 770 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
Scn11aQ9R053 Gm4189-202ENSMUST00000174167 367 ntTSL 3 BASIC19.49■□□□□ 0.71
Scn11aQ9R053 Gm6550-201ENSMUST00000187574 993 ntBASIC19.49■□□□□ 0.71
Scn11aQ9R053 Gnmt-201ENSMUST00000002846 1035 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Scn11aQ9R053 2300002M23Rik-201ENSMUST00000044326 1290 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Scn11aQ9R053 Letm1-203ENSMUST00000148451 2478 ntTSL 2 BASIC19.49■□□□□ 0.71
Scn11aQ9R053 Slc26a10-205ENSMUST00000222911 3067 ntAPPRIS ALT2 TSL 5 BASIC19.48■□□□□ 0.71
Scn11aQ9R053 Vps9d1-203ENSMUST00000122363 2952 ntAPPRIS P3 TSL 1 (best) BASIC19.48■□□□□ 0.71
Scn11aQ9R053 Pnpla2-202ENSMUST00000064151 1799 ntAPPRIS P3 TSL 1 (best) BASIC19.48■□□□□ 0.71
Scn11aQ9R053 Sil1-201ENSMUST00000025215 1695 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Scn11aQ9R053 Raxos1-201ENSMUST00000181100 2547 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
Scn11aQ9R053 Gm15173-201ENSMUST00000122049 433 ntBASIC19.48■□□□□ 0.71
Scn11aQ9R053 BC048679-202ENSMUST00000144156 640 ntAPPRIS ALT2 TSL 1 (best) BASIC19.48■□□□□ 0.71
Scn11aQ9R053 Gm37584-201ENSMUST00000193595 1290 ntBASIC19.48■□□□□ 0.71
Scn11aQ9R053 Gm44123-201ENSMUST00000204662 577 ntTSL 5 BASIC19.48■□□□□ 0.71
Scn11aQ9R053 Hist1h2ab-201ENSMUST00000078369 473 ntAPPRIS P1 BASIC19.48■□□□□ 0.71
Scn11aQ9R053 N6amt1-201ENSMUST00000054442 1884 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Scn11aQ9R053 Tbx2-201ENSMUST00000000095 3626 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Scn11aQ9R053 Tox2-201ENSMUST00000099110 2166 ntAPPRIS ALT2 TSL 5 BASIC19.48■□□□□ 0.71
Scn11aQ9R053 Zbtb22-201ENSMUST00000053429 2611 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Scn11aQ9R053 Mis18a-201ENSMUST00000099554 1333 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Scn11aQ9R053 Foxk2-201ENSMUST00000106113 5029 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Scn11aQ9R053 Nisch-208ENSMUST00000165981 2415 ntAPPRIS ALT2 TSL 1 (best) BASIC19.48■□□□□ 0.71
Scn11aQ9R053 Ccdc24-201ENSMUST00000106422 1365 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
Scn11aQ9R053 Glra1-201ENSMUST00000075603 2037 ntAPPRIS ALT1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Scn11aQ9R053 Gstm4-201ENSMUST00000029489 1707 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Scn11aQ9R053 Dnajc2-202ENSMUST00000115192 1132 ntTSL 2 BASIC19.47■□□□□ 0.71
Scn11aQ9R053 Gm13418-201ENSMUST00000119097 944 ntBASIC19.47■□□□□ 0.71
Scn11aQ9R053 Tmem176a-202ENSMUST00000168406 1086 ntAPPRIS P1 TSL 3 BASIC19.47■□□□□ 0.71
Scn11aQ9R053 Dnmt3a-ps1-201ENSMUST00000192011 1271 ntBASIC19.47■□□□□ 0.71
Scn11aQ9R053 Macrod2-206ENSMUST00000110064 4883 ntAPPRIS P2 TSL 1 (best) BASIC19.47■□□□□ 0.71
Scn11aQ9R053 Slc29a1-202ENSMUST00000064889 1988 ntAPPRIS P3 TSL 1 (best) BASIC19.47■□□□□ 0.71
Scn11aQ9R053 Mir124-2hg-202ENSMUST00000186746 1368 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
Scn11aQ9R053 Dtd1-201ENSMUST00000028917 1350 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Scn11aQ9R053 Rapsn-201ENSMUST00000050323 1606 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Scn11aQ9R053 Gm7862-201ENSMUST00000121461 292 ntBASIC19.47■□□□□ 0.71
Scn11aQ9R053 Tsc22d1-208ENSMUST00000142683 797 ntTSL 3 BASIC19.47■□□□□ 0.71
Scn11aQ9R053 Cmtm3-204ENSMUST00000212081 850 ntAPPRIS P1 TSL 5 BASIC19.47■□□□□ 0.71
Scn11aQ9R053 Wdyhv1-204ENSMUST00000226955 1094 ntBASIC19.47■□□□□ 0.71
Scn11aQ9R053 Myl12b-201ENSMUST00000038446 1253 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Scn11aQ9R053 Romo1-201ENSMUST00000088610 569 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Scn11aQ9R053 Tuba1c-201ENSMUST00000058914 1977 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Scn11aQ9R053 Opn4-202ENSMUST00000168444 2075 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
Scn11aQ9R053 Bmp6-201ENSMUST00000171970 3593 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Scn11aQ9R053 Gm12260-201ENSMUST00000122447 411 ntBASIC19.46■□□□□ 0.71
Scn11aQ9R053 Sssca1-203ENSMUST00000159693 705 ntTSL 3 BASIC19.46■□□□□ 0.71
Scn11aQ9R053 Gm24513-201ENSMUST00000174964 138 ntBASIC19.46■□□□□ 0.71
Scn11aQ9R053 Fam129b-201ENSMUST00000028135 3714 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Scn11aQ9R053 Pqlc1-202ENSMUST00000091798 1989 ntAPPRIS P3 TSL 5 BASIC19.46■□□□□ 0.71
Scn11aQ9R053 Tubb4b-201ENSMUST00000043584 1598 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Scn11aQ9R053 Gm5837-201ENSMUST00000191844 1369 ntBASIC19.46■□□□□ 0.71
Scn11aQ9R053 Sh2b2-203ENSMUST00000196397 2797 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Scn11aQ9R053 D430001F17Rik-201ENSMUST00000141344 1858 ntTSL 5 BASIC19.46■□□□□ 0.7
Scn11aQ9R053 9430038I01Rik-202ENSMUST00000117404 699 ntAPPRIS ALT2 TSL 5 BASIC19.45■□□□□ 0.7
Scn11aQ9R053 Gm11780-201ENSMUST00000136880 516 ntBASIC19.45■□□□□ 0.7
Scn11aQ9R053 Gm43438-201ENSMUST00000198133 379 ntBASIC19.45■□□□□ 0.7
Scn11aQ9R053 Tmx1-201ENSMUST00000021471 2795 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Scn11aQ9R053 Pak1ip1-201ENSMUST00000046951 1722 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Scn11aQ9R053 Prlhr-201ENSMUST00000051277 1572 ntAPPRIS P1 BASIC19.45■□□□□ 0.7
Scn11aQ9R053 Etfrf1-204ENSMUST00000111723 842 ntAPPRIS P1 TSL 5 BASIC19.44■□□□□ 0.7
Scn11aQ9R053 BC051226-201ENSMUST00000172526 837 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
Scn11aQ9R053 Dbnl-202ENSMUST00000102928 2295 ntAPPRIS P3 TSL 1 (best) BASIC19.44■□□□□ 0.7
Scn11aQ9R053 Ostm1-201ENSMUST00000040718 3006 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Scn11aQ9R053 Kat5-201ENSMUST00000113641 2008 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Scn11aQ9R053 Atp6v1b2-201ENSMUST00000006435 2825 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Scn11aQ9R053 Dnajc19-201ENSMUST00000011029 2499 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
Scn11aQ9R053 Vsig10l-204ENSMUST00000203769 2473 ntAPPRIS P2 TSL 1 (best) BASIC19.44■□□□□ 0.7
Scn11aQ9R053 Ptgis-201ENSMUST00000018113 2107 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Scn11aQ9R053 Adcy9-203ENSMUST00000120080 4974 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
Scn11aQ9R053 Inhba-202ENSMUST00000164993 1529 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Scn11aQ9R053 Fam155a-206ENSMUST00000208933 1569 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
Scn11aQ9R053 Rassf7-208ENSMUST00000209500 1560 ntAPPRIS ALT2 TSL 5 BASIC19.44■□□□□ 0.7
Scn11aQ9R053 Gm26608-201ENSMUST00000180740 1954 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
Scn11aQ9R053 Bola3-202ENSMUST00000120040 583 ntTSL 3 BASIC19.44■□□□□ 0.7
Scn11aQ9R053 Med11-202ENSMUST00000151013 445 ntTSL 2 BASIC19.44■□□□□ 0.7
Scn11aQ9R053 1700023H06Rik-201ENSMUST00000161006 1044 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
Scn11aQ9R053 Gm20481-201ENSMUST00000173680 564 ntAPPRIS P1 TSL 3 BASIC19.44■□□□□ 0.7
Scn11aQ9R053 Psmb5-202ENSMUST00000227257 622 ntBASIC19.44■□□□□ 0.7
Scn11aQ9R053 AC154757.1-201ENSMUST00000228289 336 ntBASIC19.44■□□□□ 0.7
Scn11aQ9R053 Pts-201ENSMUST00000034570 1046 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Scn11aQ9R053 Gm10175-201ENSMUST00000086013 645 ntBASIC19.44■□□□□ 0.7
Scn11aQ9R053 Gm17018-201ENSMUST00000047057 1345 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Scn11aQ9R053 Mettl27-202ENSMUST00000068617 1685 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
Scn11aQ9R053 Il4i1-202ENSMUST00000118125 2275 ntAPPRIS ALT2 TSL 2 BASIC19.43■□□□□ 0.7
Scn11aQ9R053 Pcdhb22-201ENSMUST00000097609 2266 ntTSL 2 BASIC19.43■□□□□ 0.7
Scn11aQ9R053 Fxyd6-201ENSMUST00000085939 1788 ntAPPRIS P2 TSL 1 (best) BASIC19.43■□□□□ 0.7
Scn11aQ9R053 Atp5a1-201ENSMUST00000026495 2471 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Scn11aQ9R053 Izumo1r-203ENSMUST00000117620 1095 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
Scn11aQ9R053 Rasd2-201ENSMUST00000132133 1299 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Scn11aQ9R053 Dbi-207ENSMUST00000151708 491 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
Retrieved 100 of 76,532 protein–RNA pairs in 25.1 ms