Protein–RNA interactions for Protein: Q9ERG0

Lima1, LIM domain and actin-binding protein 1, mousemouse

Known RBP Predictions only

Length 753 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lima1Q9ERG0 Ntng1-210ENSMUST00000138953 1443 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
Lima1Q9ERG0 Lpin2-213ENSMUST00000156570 1586 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
Lima1Q9ERG0 Mrpl13-205ENSMUST00000172387 1223 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Lima1Q9ERG0 Gm27011-201ENSMUST00000182352 972 ntBASIC16.32■□□□□ 0.2
Lima1Q9ERG0 Mief2-201ENSMUST00000018743 2522 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Lima1Q9ERG0 Ptpa-201ENSMUST00000042055 2586 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Lima1Q9ERG0 Gpr6-201ENSMUST00000061796 1786 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
Lima1Q9ERG0 Ralgapa1-202ENSMUST00000110687 7874 ntAPPRIS P2 TSL 1 (best) BASIC16.32■□□□□ 0.2
Lima1Q9ERG0 Tacc1-201ENSMUST00000084030 7788 ntAPPRIS P4 TSL 1 (best) BASIC16.32■□□□□ 0.2
Lima1Q9ERG0 Zmynd11-207ENSMUST00000110638 4003 ntTSL 5 BASIC16.32■□□□□ 0.2
Lima1Q9ERG0 Papd4-201ENSMUST00000048702 2990 ntAPPRIS P2 TSL 1 (best) BASIC16.32■□□□□ 0.2
Lima1Q9ERG0 Brpf1-202ENSMUST00000113119 4826 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
Lima1Q9ERG0 Rft1-201ENSMUST00000064230 2387 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Lima1Q9ERG0 Sbk2-202ENSMUST00000182214 2236 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
Lima1Q9ERG0 Coq8b-201ENSMUST00000003860 2181 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Lima1Q9ERG0 Pdss2-201ENSMUST00000095725 2127 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Lima1Q9ERG0 Vps37a-201ENSMUST00000098817 6379 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Lima1Q9ERG0 Pqlc1-205ENSMUST00000131780 2080 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
Lima1Q9ERG0 Akp-ps1-202ENSMUST00000212812 1959 ntTSL 5 BASIC16.31■□□□□ 0.2
Lima1Q9ERG0 Mdfi-202ENSMUST00000066368 1711 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Lima1Q9ERG0 Pcmt1-208ENSMUST00000162606 2757 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
Lima1Q9ERG0 Rab7-206ENSMUST00000203674 424 ntTSL 5 BASIC16.31■□□□□ 0.2
Lima1Q9ERG0 Vps37d-202ENSMUST00000076203 1286 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
Lima1Q9ERG0 Hps5-202ENSMUST00000107653 4702 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
Lima1Q9ERG0 Exoc8-201ENSMUST00000098312 4598 ntAPPRIS P1 BASIC16.31■□□□□ 0.2
Lima1Q9ERG0 Wee1-201ENSMUST00000033326 3419 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Lima1Q9ERG0 Tuba8-201ENSMUST00000032233 2263 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Lima1Q9ERG0 Krt6b-201ENSMUST00000023786 2226 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Lima1Q9ERG0 Wipf1-202ENSMUST00000102679 2039 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Lima1Q9ERG0 Slc1a6-201ENSMUST00000005490 2029 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
Lima1Q9ERG0 Sctr-201ENSMUST00000072886 2012 ntAPPRIS P3 TSL 2 BASIC16.31■□□□□ 0.2
Lima1Q9ERG0 Ank1-209ENSMUST00000121802 8218 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
Lima1Q9ERG0 Kri1-201ENSMUST00000038671 2598 ntAPPRIS P2 TSL 1 (best) BASIC16.31■□□□□ 0.2
Lima1Q9ERG0 Wnt8b-201ENSMUST00000041163 3376 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Lima1Q9ERG0 Syt3-202ENSMUST00000118962 2494 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
Lima1Q9ERG0 Hist1h2ac-201ENSMUST00000171127 2482 ntAPPRIS P1 BASIC16.3■□□□□ 0.2
Lima1Q9ERG0 Klhdc8b-214ENSMUST00000195435 1612 ntTSL 5 BASIC16.3■□□□□ 0.2
Lima1Q9ERG0 Rfx7-202ENSMUST00000163401 7880 ntAPPRIS P1 TSL 2 BASIC16.3■□□□□ 0.2
Lima1Q9ERG0 Fars2-201ENSMUST00000021857 2125 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Lima1Q9ERG0 Gusb-202ENSMUST00000111307 932 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
Lima1Q9ERG0 Smim22-201ENSMUST00000178155 429 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
Lima1Q9ERG0 AC107711.5-202ENSMUST00000226429 702 ntBASIC16.3■□□□□ 0.2
Lima1Q9ERG0 Rps23-201ENSMUST00000051955 937 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Lima1Q9ERG0 Men1-205ENSMUST00000113501 2508 ntTSL 5 BASIC16.3■□□□□ 0.2
Lima1Q9ERG0 Dennd4b-202ENSMUST00000129564 5647 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
Lima1Q9ERG0 Gm16638-201ENSMUST00000148687 1865 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
Lima1Q9ERG0 Gm26663-201ENSMUST00000181105 1882 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
Lima1Q9ERG0 Ssfa2-201ENSMUST00000111784 4999 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
Lima1Q9ERG0 Brap-201ENSMUST00000031414 3744 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Lima1Q9ERG0 Gm6277-201ENSMUST00000180860 1839 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
Lima1Q9ERG0 Ext2-201ENSMUST00000028623 2871 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Lima1Q9ERG0 Asap2-201ENSMUST00000050990 3345 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
Lima1Q9ERG0 Tnfrsf25-202ENSMUST00000035275 1603 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
Lima1Q9ERG0 Lmtk2-201ENSMUST00000041804 8114 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Lima1Q9ERG0 Syn1-201ENSMUST00000081893 3209 ntAPPRIS P4 TSL 5 BASIC16.3■□□□□ 0.2
Lima1Q9ERG0 Dbx1-201ENSMUST00000032717 2091 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Lima1Q9ERG0 Adcy7-203ENSMUST00000169037 5198 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Lima1Q9ERG0 Gm8189-202ENSMUST00000211035 2039 ntTSL 5 BASIC16.29■□□□□ 0.2
Lima1Q9ERG0 Med26-201ENSMUST00000058534 2997 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Lima1Q9ERG0 Dpys-201ENSMUST00000022915 2466 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Lima1Q9ERG0 Nr1h2-201ENSMUST00000073488 1999 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
Lima1Q9ERG0 Pick1-202ENSMUST00000053926 2415 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Lima1Q9ERG0 Pprc1-203ENSMUST00000111899 5246 ntAPPRIS P2 TSL 1 (best) BASIC16.29■□□□□ 0.2
Lima1Q9ERG0 Rbbp7-202ENSMUST00000112326 1430 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Lima1Q9ERG0 Cgn-204ENSMUST00000155485 2361 ntTSL 2 BASIC16.29■□□□□ 0.2
Lima1Q9ERG0 Mvp-202ENSMUST00000165096 2837 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Lima1Q9ERG0 Gpr180-201ENSMUST00000022728 1875 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Lima1Q9ERG0 Casp2-201ENSMUST00000031895 3529 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Lima1Q9ERG0 Gas2l2-201ENSMUST00000052521 2610 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Lima1Q9ERG0 Gm24841-201ENSMUST00000158676 357 ntBASIC16.29■□□□□ 0.2
Lima1Q9ERG0 Uqcr11-201ENSMUST00000020372 445 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Lima1Q9ERG0 Map7-205ENSMUST00000214231 675 ntTSL 3 BASIC16.29■□□□□ 0.2
Lima1Q9ERG0 Tdg-ps-201ENSMUST00000051363 2968 ntBASIC16.29■□□□□ 0.2
Lima1Q9ERG0 Smad3-201ENSMUST00000034973 5090 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Lima1Q9ERG0 Sec31a-201ENSMUST00000094578 4228 ntAPPRIS P2 TSL 5 BASIC16.29■□□□□ 0.2
Lima1Q9ERG0 Tpd52-205ENSMUST00000120143 6317 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Lima1Q9ERG0 Dnajb11-204ENSMUST00000166487 2534 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Lima1Q9ERG0 Fbxo7-203ENSMUST00000120344 1655 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
Lima1Q9ERG0 Gm43072-201ENSMUST00000200283 1671 ntBASIC16.29■□□□□ 0.2
Lima1Q9ERG0 Gm28756-202ENSMUST00000209405 2461 ntTSL 5 BASIC16.29■□□□□ 0.2
Lima1Q9ERG0 4931440P22Rik-202ENSMUST00000147424 2430 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Lima1Q9ERG0 Ppp2r5e-201ENSMUST00000021447 4810 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Lima1Q9ERG0 Celf1-206ENSMUST00000111451 4678 ntAPPRIS ALT1 TSL 5 BASIC16.29■□□□□ 0.2
Lima1Q9ERG0 Insig1-201ENSMUST00000059155 2697 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Lima1Q9ERG0 Fam81a-201ENSMUST00000034749 3703 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Lima1Q9ERG0 Dcdc2c-206ENSMUST00000221349 2209 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
Lima1Q9ERG0 Ptprd-206ENSMUST00000107289 9899 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
Lima1Q9ERG0 Klhdc10-201ENSMUST00000068240 3951 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
Lima1Q9ERG0 Snx9-201ENSMUST00000002436 2411 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Lima1Q9ERG0 Klhdc4-201ENSMUST00000045884 2078 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Lima1Q9ERG0 Dag1-203ENSMUST00000171412 4415 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Lima1Q9ERG0 Plekha4-206ENSMUST00000211155 2044 ntAPPRIS ALT2 TSL 5 BASIC16.28■□□□□ 0.2
Lima1Q9ERG0 Oxr1-206ENSMUST00000170127 4251 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
Lima1Q9ERG0 Msl1-201ENSMUST00000037915 4593 ntAPPRIS P2 TSL 1 (best) BASIC16.28■□□□□ 0.2
Lima1Q9ERG0 Trpv4-203ENSMUST00000112219 2295 ntTSL 5 BASIC16.28■□□□□ 0.2
Lima1Q9ERG0 Lman2l-202ENSMUST00000115011 2290 ntTSL 5 BASIC16.28■□□□□ 0.2
Lima1Q9ERG0 Rsrc1-205ENSMUST00000161726 3213 ntAPPRIS P2 TSL 1 (best) BASIC16.28■□□□□ 0.2
Lima1Q9ERG0 Igflr1-202ENSMUST00000172251 1224 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
Lima1Q9ERG0 Gm21863-201ENSMUST00000179133 336 ntAPPRIS P1 BASIC16.28■□□□□ 0.2
Lima1Q9ERG0 Gm2990-201ENSMUST00000180662 1118 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
Retrieved 100 of 76,532 protein–RNA pairs in 25.8 ms