Protein–RNA interactions for Protein: Q99LC2

Cstf1, Cleavage stimulation factor subunit 1, mousemouse

Known RBP Predictions only

Length 431 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cstf1Q99LC2 Pgrmc1-201ENSMUST00000073339 1857 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Cstf1Q99LC2 Meg3-201ENSMUST00000124106 1988 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
Cstf1Q99LC2 Foxp4-204ENSMUST00000113265 3999 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
Cstf1Q99LC2 Arhgef19-201ENSMUST00000006618 3414 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Cstf1Q99LC2 Nfil3-201ENSMUST00000071065 2026 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Cstf1Q99LC2 Timm17b-201ENSMUST00000033498 2381 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Cstf1Q99LC2 Akain1-201ENSMUST00000169935 2296 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Cstf1Q99LC2 Mapk1-202ENSMUST00000069107 5099 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Cstf1Q99LC2 Pced1a-202ENSMUST00000110277 1689 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Cstf1Q99LC2 Gm9917-202ENSMUST00000181099 1499 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
Cstf1Q99LC2 Fam131b-203ENSMUST00000143278 4104 ntAPPRIS P3 TSL 1 (best) BASIC16.44■□□□□ 0.22
Cstf1Q99LC2 Snupn-201ENSMUST00000068856 1391 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Cstf1Q99LC2 Zfp512b-201ENSMUST00000108789 5714 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Cstf1Q99LC2 Selenoh-201ENSMUST00000102646 783 ntAPPRIS P2 TSL 1 (best) BASIC16.44■□□□□ 0.22
Cstf1Q99LC2 Rpl39l-202ENSMUST00000121292 550 ntAPPRIS P1 TSL 2 BASIC16.44■□□□□ 0.22
Cstf1Q99LC2 Sec22b-202ENSMUST00000122288 1177 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
Cstf1Q99LC2 Gm27397-201ENSMUST00000184997 107 ntBASIC16.44■□□□□ 0.22
Cstf1Q99LC2 Selenoh-206ENSMUST00000189988 390 ntTSL 3 BASIC16.44■□□□□ 0.22
Cstf1Q99LC2 Gm45144-201ENSMUST00000207473 354 ntTSL 5 BASIC16.44■□□□□ 0.22
Cstf1Q99LC2 Gm36584-201ENSMUST00000209046 708 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
Cstf1Q99LC2 Gm32050-201ENSMUST00000209793 638 ntTSL 3 BASIC16.44■□□□□ 0.22
Cstf1Q99LC2 5830454E08Rik-202ENSMUST00000213974 744 ntBASIC16.44■□□□□ 0.22
Cstf1Q99LC2 Lrr1-203ENSMUST00000222520 767 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
Cstf1Q99LC2 Apopt1-201ENSMUST00000040519 1065 ntAPPRIS P3 TSL 1 (best) BASIC16.44■□□□□ 0.22
Cstf1Q99LC2 Psma5-201ENSMUST00000090569 1239 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Cstf1Q99LC2 Lce3f-201ENSMUST00000090863 611 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Cstf1Q99LC2 Mid2-202ENSMUST00000112990 6271 ntAPPRIS P1 TSL 5 BASIC16.44■□□□□ 0.22
Cstf1Q99LC2 Glra1-201ENSMUST00000075603 2037 ntAPPRIS ALT1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Cstf1Q99LC2 Abhd5-202ENSMUST00000111497 2576 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
Cstf1Q99LC2 Gss-203ENSMUST00000130881 1724 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
Cstf1Q99LC2 Rsph6a-201ENSMUST00000035521 2354 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Cstf1Q99LC2 Sri-205ENSMUST00000148633 2251 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Cstf1Q99LC2 Zfp219-204ENSMUST00000226522 2804 ntAPPRIS P2 BASIC16.44■□□□□ 0.22
Cstf1Q99LC2 Vps4a-201ENSMUST00000034388 2178 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Cstf1Q99LC2 Hpcal1-201ENSMUST00000071858 1526 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Cstf1Q99LC2 Clstn2-201ENSMUST00000035027 4365 ntAPPRIS P2 TSL 1 (best) BASIC16.44■□□□□ 0.22
Cstf1Q99LC2 Ank1-203ENSMUST00000110688 7206 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
Cstf1Q99LC2 9330111N05Rik-202ENSMUST00000181043 2449 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
Cstf1Q99LC2 Ankrd39-201ENSMUST00000001172 2109 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Cstf1Q99LC2 Ecel1-204ENSMUST00000161002 3033 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Cstf1Q99LC2 Capn1-202ENSMUST00000164843 3048 ntAPPRIS P1 TSL 5 BASIC16.43■□□□□ 0.22
Cstf1Q99LC2 Dbnl-203ENSMUST00000109845 2001 ntAPPRIS ALT2 TSL 1 (best) BASIC16.43■□□□□ 0.22
Cstf1Q99LC2 Krt23-201ENSMUST00000006969 1565 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Cstf1Q99LC2 Rasal2-201ENSMUST00000078308 10047 ntAPPRIS P2 TSL 1 (best) BASIC16.43■□□□□ 0.22
Cstf1Q99LC2 Tmem94-202ENSMUST00000103033 5238 ntAPPRIS P2 TSL 2 BASIC16.43■□□□□ 0.22
Cstf1Q99LC2 Wnt10b-204ENSMUST00000226655 1807 ntBASIC16.43■□□□□ 0.22
Cstf1Q99LC2 Ddx41-204ENSMUST00000224765 2199 ntBASIC16.43■□□□□ 0.22
Cstf1Q99LC2 Ilkap-201ENSMUST00000027534 1368 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Cstf1Q99LC2 Cyp26c1-201ENSMUST00000073391 1747 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Cstf1Q99LC2 Qdpr-204ENSMUST00000120867 1234 ntTSL 5 BASIC16.43■□□□□ 0.22
Cstf1Q99LC2 Gm11750-201ENSMUST00000146016 583 ntTSL 5 BASIC16.43■□□□□ 0.22
Cstf1Q99LC2 Chd3os-202ENSMUST00000151617 389 ntTSL 3 BASIC16.43■□□□□ 0.22
Cstf1Q99LC2 Ubl5-204ENSMUST00000160682 489 ntAPPRIS P1 TSL 5 BASIC16.43■□□□□ 0.22
Cstf1Q99LC2 Gm24513-201ENSMUST00000174964 138 ntBASIC16.43■□□□□ 0.22
Cstf1Q99LC2 Gm10576-201ENSMUST00000191927 825 ntBASIC16.43■□□□□ 0.22
Cstf1Q99LC2 AC159641.1-201ENSMUST00000221117 177 ntTSL 3 BASIC16.43■□□□□ 0.22
Cstf1Q99LC2 Tmem52-201ENSMUST00000023920 932 ntAPPRIS ALT2 TSL 1 (best) BASIC16.43■□□□□ 0.22
Cstf1Q99LC2 Hist1h2ak-201ENSMUST00000074752 393 ntAPPRIS P1 BASIC16.43■□□□□ 0.22
Cstf1Q99LC2 Cdk12-203ENSMUST00000107539 5912 ntAPPRIS ALT2 TSL 5 BASIC16.43■□□□□ 0.22
Cstf1Q99LC2 Aurkb-201ENSMUST00000021277 1950 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Cstf1Q99LC2 Pard3-226ENSMUST00000162907 4682 ntAPPRIS ALT2 TSL 1 (best) BASIC16.43■□□□□ 0.22
Cstf1Q99LC2 Slc25a47-202ENSMUST00000221080 1890 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
Cstf1Q99LC2 Mta1-201ENSMUST00000009099 2826 ntAPPRIS ALT2 TSL 5 BASIC16.43■□□□□ 0.22
Cstf1Q99LC2 Gck-202ENSMUST00000109822 1786 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
Cstf1Q99LC2 Prkar2a-201ENSMUST00000035220 4965 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Cstf1Q99LC2 Zfp768-201ENSMUST00000060783 2356 ntAPPRIS P2 TSL 1 (best) BASIC16.43■□□□□ 0.22
Cstf1Q99LC2 Gm13032-201ENSMUST00000151848 2001 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
Cstf1Q99LC2 Camkk2-211ENSMUST00000200109 2751 ntAPPRIS P3 TSL 1 (best) BASIC16.43■□□□□ 0.22
Cstf1Q99LC2 Sik3-204ENSMUST00000126865 6287 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Cstf1Q99LC2 Synm-205ENSMUST00000208815 2697 ntAPPRIS ALT2 TSL 5 BASIC16.42■□□□□ 0.22
Cstf1Q99LC2 Il11ra1-202ENSMUST00000108040 1837 ntAPPRIS P1 TSL 5 BASIC16.42■□□□□ 0.22
Cstf1Q99LC2 Cog6-204ENSMUST00000193432 2078 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
Cstf1Q99LC2 Crk-203ENSMUST00000108425 4290 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
Cstf1Q99LC2 Lrrc14-202ENSMUST00000127208 4849 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Cstf1Q99LC2 Nudt17-204ENSMUST00000200387 2108 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
Cstf1Q99LC2 Kcnn1-207ENSMUST00000212509 1608 ntAPPRIS ALT2 TSL 5 BASIC16.42■□□□□ 0.22
Cstf1Q99LC2 Dhh-201ENSMUST00000023737 2363 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Cstf1Q99LC2 Gm5828-201ENSMUST00000071842 1860 ntBASIC16.42■□□□□ 0.22
Cstf1Q99LC2 Ttc13-201ENSMUST00000041614 3038 ntTSL 2 BASIC16.42■□□□□ 0.22
Cstf1Q99LC2 Gm20604-201ENSMUST00000174651 2795 ntAPPRIS P1 TSL 2 BASIC16.42■□□□□ 0.22
Cstf1Q99LC2 Taz-202ENSMUST00000114180 1786 ntAPPRIS ALT1 TSL 5 BASIC16.42■□□□□ 0.22
Cstf1Q99LC2 Rhoc-202ENSMUST00000106787 959 ntAPPRIS P1 TSL 2 BASIC16.42■□□□□ 0.22
Cstf1Q99LC2 B9d2-201ENSMUST00000108403 1021 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Cstf1Q99LC2 Ftl2-ps-201ENSMUST00000118517 552 ntBASIC16.42■□□□□ 0.22
Cstf1Q99LC2 Jpx-202ENSMUST00000182447 712 ntTSL 3 BASIC16.42■□□□□ 0.22
Cstf1Q99LC2 Gm16845-202ENSMUST00000216270 567 ntTSL 2 BASIC16.42■□□□□ 0.22
Cstf1Q99LC2 Gm40513-201ENSMUST00000217258 411 ntTSL 3 BASIC16.42■□□□□ 0.22
Cstf1Q99LC2 CT009713.7-201ENSMUST00000224689 571 ntBASIC16.42■□□□□ 0.22
Cstf1Q99LC2 Rbfox2-207ENSMUST00000227533 1041 ntBASIC16.42■□□□□ 0.22
Cstf1Q99LC2 Lce1l-201ENSMUST00000054426 670 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Cstf1Q99LC2 Methig1-201ENSMUST00000075675 1029 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Cstf1Q99LC2 Gm15590-201ENSMUST00000078419 552 ntBASIC16.42■□□□□ 0.22
Cstf1Q99LC2 Nr1h2-213ENSMUST00000167197 1944 ntAPPRIS P3 TSL 5 BASIC16.42■□□□□ 0.22
Cstf1Q99LC2 Bin2-204ENSMUST00000182775 1908 ntTSL 5 BASIC16.42■□□□□ 0.22
Cstf1Q99LC2 Dmrt2-201ENSMUST00000053068 2347 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Cstf1Q99LC2 Fam107a-202ENSMUST00000120411 2093 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Cstf1Q99LC2 Negr1-201ENSMUST00000041425 2095 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
Cstf1Q99LC2 Orai3-201ENSMUST00000061587 1996 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Cstf1Q99LC2 Lrp5-202ENSMUST00000176867 2759 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
Cstf1Q99LC2 Rbl2-201ENSMUST00000034091 4925 ntAPPRIS P3 TSL 1 (best) BASIC16.42■□□□□ 0.22
Retrieved 100 of 76,532 protein–RNA pairs in 29.8 ms