Protein–RNA interactions for Protein: Q6ZPL9

Ddx55, ATP-dependent RNA helicase DDX55, mousemouse

Known RBP Predictions only

Length 600 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx55Q6ZPL9 Lcat-201ENSMUST00000038896 1342 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Ddx55Q6ZPL9 Slc30a9-204ENSMUST00000162372 5711 ntAPPRIS P3 TSL 1 (best) BASIC18.75■□□□□ 0.59
Ddx55Q6ZPL9 Shox2-202ENSMUST00000162060 1537 ntTSL 3 BASIC18.75■□□□□ 0.59
Ddx55Q6ZPL9 Rusc1-203ENSMUST00000166687 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
Ddx55Q6ZPL9 Slc23a4-205ENSMUST00000201355 2003 ntAPPRIS P1 TSL 5 BASIC18.75■□□□□ 0.59
Ddx55Q6ZPL9 A930016O22Rik-201ENSMUST00000047020 1214 ntTSL 2 BASIC18.75■□□□□ 0.59
Ddx55Q6ZPL9 Lhb-201ENSMUST00000072453 678 ntAPPRIS P1 TSL 2 BASIC18.75■□□□□ 0.59
Ddx55Q6ZPL9 Gm10175-201ENSMUST00000086013 645 ntBASIC18.75■□□□□ 0.59
Ddx55Q6ZPL9 Fiz1-203ENSMUST00000167804 2637 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Ddx55Q6ZPL9 Cckbr-201ENSMUST00000033189 2573 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Ddx55Q6ZPL9 Pgs1-203ENSMUST00000132676 2863 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Ddx55Q6ZPL9 Pth1r-204ENSMUST00000198865 2201 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Ddx55Q6ZPL9 Snip1-201ENSMUST00000052183 2345 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Ddx55Q6ZPL9 Foxf1-201ENSMUST00000181504 2415 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Ddx55Q6ZPL9 Tnrc18-201ENSMUST00000151477 6487 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Ddx55Q6ZPL9 Tmem136-202ENSMUST00000213544 2463 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Ddx55Q6ZPL9 Khdrbs2-201ENSMUST00000027226 2281 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Ddx55Q6ZPL9 Taf6l-213ENSMUST00000189739 1794 ntTSL 5 BASIC18.74■□□□□ 0.59
Ddx55Q6ZPL9 Thap7-201ENSMUST00000100125 1248 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Ddx55Q6ZPL9 Hmgb1-208ENSMUST00000139443 923 ntTSL 2 BASIC18.74■□□□□ 0.59
Ddx55Q6ZPL9 Gm25911-201ENSMUST00000157621 56 ntBASIC18.74■□□□□ 0.59
Ddx55Q6ZPL9 Rpl18-204ENSMUST00000209693 535 ntTSL 5 BASIC18.74■□□□□ 0.59
Ddx55Q6ZPL9 3830406C13Rik-207ENSMUST00000223927 1010 ntBASIC18.74■□□□□ 0.59
Ddx55Q6ZPL9 Ndufb6-201ENSMUST00000095128 659 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Ddx55Q6ZPL9 Clint1-201ENSMUST00000109260 3311 ntAPPRIS P3 TSL 1 (best) BASIC18.74■□□□□ 0.59
Ddx55Q6ZPL9 Miga1-205ENSMUST00000199397 2842 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
Ddx55Q6ZPL9 Epha10-201ENSMUST00000059343 2544 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Ddx55Q6ZPL9 Coq6-201ENSMUST00000021661 1602 ntAPPRIS P2 TSL 1 (best) BASIC18.74■□□□□ 0.59
Ddx55Q6ZPL9 Ntrk1-201ENSMUST00000029712 2588 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Ddx55Q6ZPL9 Psmc4-201ENSMUST00000032824 1440 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Ddx55Q6ZPL9 Nr1h2-202ENSMUST00000107910 1948 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
Ddx55Q6ZPL9 Msantd3-202ENSMUST00000064807 1378 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Ddx55Q6ZPL9 Gm10649-203ENSMUST00000148066 1812 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
Ddx55Q6ZPL9 Gpaa1-210ENSMUST00000172281 1809 ntTSL 5 BASIC18.73■□□□□ 0.59
Ddx55Q6ZPL9 Gm36967-201ENSMUST00000193814 266 ntBASIC18.73■□□□□ 0.59
Ddx55Q6ZPL9 Mrpl46-201ENSMUST00000032841 1134 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Ddx55Q6ZPL9 Klk14-201ENSMUST00000056329 1271 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Ddx55Q6ZPL9 Rnf112-201ENSMUST00000054927 3086 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
Ddx55Q6ZPL9 Runx2-204ENSMUST00000159943 2316 ntAPPRIS P3 TSL 1 (best) BASIC18.73■□□□□ 0.59
Ddx55Q6ZPL9 Zbtb32-202ENSMUST00000108151 1775 ntAPPRIS P1 TSL 5 BASIC18.73■□□□□ 0.59
Ddx55Q6ZPL9 AU019823-202ENSMUST00000145139 2805 ntTSL 2 BASIC18.73■□□□□ 0.59
Ddx55Q6ZPL9 Klhl25-202ENSMUST00000171155 3403 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Ddx55Q6ZPL9 Fosl1-201ENSMUST00000025850 1707 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Ddx55Q6ZPL9 Kdf1-201ENSMUST00000042919 1708 ntAPPRIS P2 TSL 1 (best) BASIC18.72■□□□□ 0.59
Ddx55Q6ZPL9 Il11ra2-201ENSMUST00000108006 1299 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Ddx55Q6ZPL9 Etfrf1-204ENSMUST00000111723 842 ntAPPRIS P1 TSL 5 BASIC18.72■□□□□ 0.59
Ddx55Q6ZPL9 Pmf1-205ENSMUST00000193338 795 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
Ddx55Q6ZPL9 Gm45208-202ENSMUST00000208156 1153 ntAPPRIS P1 TSL 5 BASIC18.72■□□□□ 0.59
Ddx55Q6ZPL9 Atp6v0b-201ENSMUST00000036380 1000 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Ddx55Q6ZPL9 1500035N22Rik-201ENSMUST00000075081 865 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
Ddx55Q6ZPL9 Hist1h2ab-201ENSMUST00000078369 473 ntAPPRIS P1 BASIC18.72■□□□□ 0.59
Ddx55Q6ZPL9 Kcns3-201ENSMUST00000055673 2933 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Ddx55Q6ZPL9 Ahcyl2-204ENSMUST00000115242 5152 ntAPPRIS P3 TSL 1 (best) BASIC18.72■□□□□ 0.59
Ddx55Q6ZPL9 Echdc2-201ENSMUST00000052999 1307 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Ddx55Q6ZPL9 Nmt2-203ENSMUST00000102989 2162 ntAPPRIS P1 TSL 5 BASIC18.71■□□□□ 0.59
Ddx55Q6ZPL9 Six3os1-206ENSMUST00000175921 2737 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
Ddx55Q6ZPL9 Hebp2-203ENSMUST00000214548 2083 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
Ddx55Q6ZPL9 Epo-202ENSMUST00000111038 855 ntAPPRIS P3 TSL 5 BASIC18.71■□□□□ 0.59
Ddx55Q6ZPL9 Egfl7-216ENSMUST00000174211 1163 ntAPPRIS P4 TSL 1 (best) BASIC18.71■□□□□ 0.59
Ddx55Q6ZPL9 1700028B04Rik-202ENSMUST00000190841 971 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
Ddx55Q6ZPL9 Gm31545-201ENSMUST00000209358 1219 ntTSL 5 BASIC18.71■□□□□ 0.59
Ddx55Q6ZPL9 Frmd5-213ENSMUST00000212518 922 ntTSL 5 BASIC18.71■□□□□ 0.59
Ddx55Q6ZPL9 1110038F14Rik-201ENSMUST00000071792 1010 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Ddx55Q6ZPL9 Hacd1-201ENSMUST00000074854 926 ntAPPRIS P1 TSL 5 BASIC18.71■□□□□ 0.59
Ddx55Q6ZPL9 Prdm5-203ENSMUST00000081219 984 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
Ddx55Q6ZPL9 Map4k4-202ENSMUST00000168431 5632 ntAPPRIS ALT2 TSL 5 BASIC18.71■□□□□ 0.59
Ddx55Q6ZPL9 Gjb1-203ENSMUST00000119190 1585 ntAPPRIS P1 TSL 2 BASIC18.71■□□□□ 0.59
Ddx55Q6ZPL9 Dmtn-207ENSMUST00000228001 2437 ntBASIC18.71■□□□□ 0.59
Ddx55Q6ZPL9 1700029H14Rik-203ENSMUST00000134023 1319 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
Ddx55Q6ZPL9 Epc2-201ENSMUST00000092123 4697 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Ddx55Q6ZPL9 Scamp3-203ENSMUST00000120697 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
Ddx55Q6ZPL9 Dnal4-201ENSMUST00000023055 1469 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Ddx55Q6ZPL9 Med9-201ENSMUST00000081980 1920 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Ddx55Q6ZPL9 Chtf8-206ENSMUST00000177068 2931 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Ddx55Q6ZPL9 Gab1-202ENSMUST00000210676 4985 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
Ddx55Q6ZPL9 Klf16-201ENSMUST00000038558 2674 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Ddx55Q6ZPL9 Ube2j2-203ENSMUST00000105581 1391 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Ddx55Q6ZPL9 Nap1l1-206ENSMUST00000219143 1365 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
Ddx55Q6ZPL9 Actg1-202ENSMUST00000071555 1952 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Ddx55Q6ZPL9 Ncor1-203ENSMUST00000069456 3171 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
Ddx55Q6ZPL9 Hbb-bh0-201ENSMUST00000124800 129 ntBASIC18.7■□□□□ 0.58
Ddx55Q6ZPL9 Gssos1-201ENSMUST00000142509 716 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
Ddx55Q6ZPL9 Mymx-202ENSMUST00000169137 616 ntAPPRIS P4 TSL 2 BASIC18.7■□□□□ 0.58
Ddx55Q6ZPL9 Ythdc1-203ENSMUST00000120498 3269 ntAPPRIS ALT2 TSL 5 BASIC18.7■□□□□ 0.58
Ddx55Q6ZPL9 Cyp21a1-201ENSMUST00000025223 2058 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Ddx55Q6ZPL9 Ppp2r1b-206ENSMUST00000175645 1931 ntAPPRIS ALT2 TSL 5 BASIC18.7■□□□□ 0.58
Ddx55Q6ZPL9 Dok3-202ENSMUST00000223563 1644 ntAPPRIS P1 BASIC18.7■□□□□ 0.58
Ddx55Q6ZPL9 Trak1-209ENSMUST00000210798 5363 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
Ddx55Q6ZPL9 Nxnl1-201ENSMUST00000048243 2285 ntAPPRIS P1 TSL 2 BASIC18.7■□□□□ 0.58
Ddx55Q6ZPL9 Retreg1-201ENSMUST00000022881 3248 ntTSL 5 BASIC18.7■□□□□ 0.58
Ddx55Q6ZPL9 Gm16976-202ENSMUST00000127408 1515 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
Ddx55Q6ZPL9 Rhd-201ENSMUST00000030627 1514 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Ddx55Q6ZPL9 Tedc2-201ENSMUST00000024930 2166 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Ddx55Q6ZPL9 Taf4b-201ENSMUST00000169862 5149 ntAPPRIS P1 TSL 5 BASIC18.69■□□□□ 0.58
Ddx55Q6ZPL9 Magi2-203ENSMUST00000115267 4478 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
Ddx55Q6ZPL9 Tdh-201ENSMUST00000022522 1881 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Ddx55Q6ZPL9 Cd40-202ENSMUST00000073707 1596 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
Ddx55Q6ZPL9 5031425F14Rik-201ENSMUST00000127920 2098 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
Ddx55Q6ZPL9 Tekt1-202ENSMUST00000108502 1403 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Ddx55Q6ZPL9 Rab9-202ENSMUST00000112091 1447 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Retrieved 100 of 76,532 protein–RNA pairs in 32.1 ms