Protein–RNA interactions for Protein: Q62158

Trim27, Zinc finger protein RFP, mousemouse

Predictions only

Length 513 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim27Q62158 Crhr2-203ENSMUST00000114374 1440 ntAPPRIS ALT1 TSL 5 BASIC20.29■□□□□ 0.84
Trim27Q62158 Trim54-201ENSMUST00000013771 1434 ntAPPRIS P2 TSL 1 (best) BASIC20.29■□□□□ 0.84
Trim27Q62158 Pld2-201ENSMUST00000018429 3659 ntAPPRIS P3 TSL 1 (best) BASIC20.29■□□□□ 0.84
Trim27Q62158 Bnip2-201ENSMUST00000034754 2464 ntAPPRIS P4 TSL 1 (best) BASIC20.29■□□□□ 0.84
Trim27Q62158 Lats2-201ENSMUST00000022531 5191 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Trim27Q62158 Kat2a-202ENSMUST00000103118 3046 ntAPPRIS P4 TSL 1 (best) BASIC20.29■□□□□ 0.84
Trim27Q62158 1700024G13Rik-201ENSMUST00000100723 850 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Trim27Q62158 Gm10013-201ENSMUST00000106074 672 ntBASIC20.29■□□□□ 0.84
Trim27Q62158 Ccnd3-ps-201ENSMUST00000117963 881 ntBASIC20.29■□□□□ 0.84
Trim27Q62158 Ccl27a-219ENSMUST00000173865 657 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
Trim27Q62158 Pyy-201ENSMUST00000017455 555 ntAPPRIS P3 TSL 1 (best) BASIC20.29■□□□□ 0.84
Trim27Q62158 Mir9-3hg-206ENSMUST00000182937 636 ntTSL 3 BASIC20.29■□□□□ 0.84
Trim27Q62158 Mir7071-201ENSMUST00000184847 69 ntBASIC20.29■□□□□ 0.84
Trim27Q62158 Kcnq2-204ENSMUST00000103047 2899 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
Trim27Q62158 Map4k4-202ENSMUST00000168431 5632 ntAPPRIS ALT2 TSL 5 BASIC20.29■□□□□ 0.84
Trim27Q62158 AC115863.1-201ENSMUST00000214815 1813 ntBASIC20.29■□□□□ 0.84
Trim27Q62158 Slc27a1-207ENSMUST00000212889 2730 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Trim27Q62158 Ap2a2-201ENSMUST00000003038 4646 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Trim27Q62158 Cobll1-205ENSMUST00000112431 5024 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
Trim27Q62158 Cend1-201ENSMUST00000084436 1672 ntAPPRIS P1 TSL 5 BASIC20.29■□□□□ 0.84
Trim27Q62158 Crem-228ENSMUST00000150235 2662 ntAPPRIS P2 TSL 5 BASIC20.29■□□□□ 0.84
Trim27Q62158 Zhx1-202ENSMUST00000110168 5212 ntAPPRIS P1 TSL 5 BASIC20.29■□□□□ 0.84
Trim27Q62158 Igfbp2-201ENSMUST00000047328 1307 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Trim27Q62158 Fip1l1-203ENSMUST00000113535 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
Trim27Q62158 Zfp689-202ENSMUST00000106299 1417 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
Trim27Q62158 Slc6a1-204ENSMUST00000204074 1740 ntTSL 5 BASIC20.28■□□□□ 0.84
Trim27Q62158 Rnf157-201ENSMUST00000100202 4619 ntAPPRIS P2 TSL 1 (best) BASIC20.28■□□□□ 0.84
Trim27Q62158 Nipsnap1-201ENSMUST00000038570 1926 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Trim27Q62158 Arnt-204ENSMUST00000107160 783 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
Trim27Q62158 Gm36967-201ENSMUST00000193814 266 ntBASIC20.28■□□□□ 0.84
Trim27Q62158 Grtp1-204ENSMUST00000209691 1030 ntTSL 5 BASIC20.28■□□□□ 0.84
Trim27Q62158 Nudt21-204ENSMUST00000212981 1184 ntTSL 3 BASIC20.28■□□□□ 0.84
Trim27Q62158 Cmc1-202ENSMUST00000215799 531 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
Trim27Q62158 AC156576.2-201ENSMUST00000222752 503 ntTSL 5 BASIC20.28■□□□□ 0.84
Trim27Q62158 Abcc5-203ENSMUST00000096199 1136 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
Trim27Q62158 Dtx2-203ENSMUST00000111144 2545 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
Trim27Q62158 Eva1c-201ENSMUST00000037539 1698 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Trim27Q62158 Hnrnpl-202ENSMUST00000172529 1898 ntTSL 5 BASIC20.28■□□□□ 0.84
Trim27Q62158 Hhatl-201ENSMUST00000035110 1870 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Trim27Q62158 Tjap1-214ENSMUST00000225413 2189 ntAPPRIS ALT2 BASIC20.28■□□□□ 0.84
Trim27Q62158 Chst5-201ENSMUST00000034430 2182 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Trim27Q62158 Prkcb-201ENSMUST00000064921 2557 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
Trim27Q62158 Tprn-201ENSMUST00000114336 2787 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Trim27Q62158 Scin-201ENSMUST00000002640 2995 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Trim27Q62158 Fam131b-201ENSMUST00000031891 4065 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
Trim27Q62158 Fcgrt-203ENSMUST00000210642 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
Trim27Q62158 2810013P06Rik-201ENSMUST00000186531 2137 ntBASIC20.27■□□□□ 0.84
Trim27Q62158 Lrrtm1-203ENSMUST00000161677 2518 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Trim27Q62158 Plaa-201ENSMUST00000107107 2784 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Trim27Q62158 9530068E07Rik-201ENSMUST00000036952 2467 ntAPPRIS P2 TSL 1 (best) BASIC20.27■□□□□ 0.84
Trim27Q62158 4930474H06Rik-201ENSMUST00000132822 1590 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
Trim27Q62158 Has3-202ENSMUST00000175987 1154 ntTSL 5 BASIC20.27■□□□□ 0.84
Trim27Q62158 Ankrd40-201ENSMUST00000021227 1215 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
Trim27Q62158 Nudt1-201ENSMUST00000050205 954 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Trim27Q62158 Nudt1-202ENSMUST00000071881 952 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Trim27Q62158 Rgl1-202ENSMUST00000111857 3037 ntTSL 5 BASIC20.27■□□□□ 0.84
Trim27Q62158 Tle2-213ENSMUST00000146358 2749 ntAPPRIS P3 TSL 1 (best) BASIC20.27■□□□□ 0.84
Trim27Q62158 Mag-203ENSMUST00000187137 2434 ntAPPRIS P2 TSL 1 (best) BASIC20.27■□□□□ 0.84
Trim27Q62158 Pgap3-202ENSMUST00000090827 2419 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Trim27Q62158 Tbc1d9-202ENSMUST00000093393 5334 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Trim27Q62158 Poli-203ENSMUST00000159389 2662 ntTSL 1 (best) BASIC20.27■□□□□ 0.83
Trim27Q62158 Zkscan4-202ENSMUST00000225845 1506 ntBASIC20.27■□□□□ 0.83
Trim27Q62158 Taf6l-212ENSMUST00000177216 2167 ntAPPRIS P1 TSL 5 BASIC20.27■□□□□ 0.83
Trim27Q62158 Hsd3b2-201ENSMUST00000107021 1788 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Trim27Q62158 Ints8-202ENSMUST00000108318 3169 ntTSL 5 BASIC20.26■□□□□ 0.83
Trim27Q62158 Ush1c-208ENSMUST00000177212 1696 ntAPPRIS ALT2 TSL 5 BASIC20.26■□□□□ 0.83
Trim27Q62158 Sptbn4-201ENSMUST00000011895 8747 ntAPPRIS P2 TSL 1 (best) BASIC20.26■□□□□ 0.83
Trim27Q62158 H2-K1-205ENSMUST00000172912 1570 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
Trim27Q62158 Ints8-201ENSMUST00000044616 3433 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Trim27Q62158 Sart3-201ENSMUST00000019118 4447 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Trim27Q62158 Gm14641-201ENSMUST00000136486 452 ntTSL 3 BASIC20.26■□□□□ 0.83
Trim27Q62158 Gm17349-201ENSMUST00000163472 300 ntAPPRIS P1 TSL 5 BASIC20.26■□□□□ 0.83
Trim27Q62158 4930505N22Rik-201ENSMUST00000181820 945 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
Trim27Q62158 Wdr74-202ENSMUST00000210512 1078 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
Trim27Q62158 Kiss1r-202ENSMUST00000219745 979 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
Trim27Q62158 AC121577.1-201ENSMUST00000227302 707 ntBASIC20.26■□□□□ 0.83
Trim27Q62158 Coq7-201ENSMUST00000032887 914 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Trim27Q62158 Cdkn2c-201ENSMUST00000063531 1106 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Trim27Q62158 Hist1h2ad-201ENSMUST00000090776 572 ntAPPRIS P1 BASIC20.26■□□□□ 0.83
Trim27Q62158 C530025M09Rik-201ENSMUST00000099264 690 ntAPPRIS P1 BASIC20.26■□□□□ 0.83
Trim27Q62158 Ly6e-201ENSMUST00000051698 2281 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Trim27Q62158 Gm13327-201ENSMUST00000133391 2741 ntTSL 5 BASIC20.26■□□□□ 0.83
Trim27Q62158 Uso1-201ENSMUST00000031355 3898 ntAPPRIS P2 TSL 1 (best) BASIC20.26■□□□□ 0.83
Trim27Q62158 Ankrd23-201ENSMUST00000054665 1964 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Trim27Q62158 Ggnbp1-201ENSMUST00000053683 1525 ntAPPRIS P3 TSL 1 (best) BASIC20.26■□□□□ 0.83
Trim27Q62158 Ago4-201ENSMUST00000084289 6537 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Trim27Q62158 Rybp-201ENSMUST00000101118 4503 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Trim27Q62158 Lrrc45-201ENSMUST00000026139 2492 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Trim27Q62158 Mycl-201ENSMUST00000030407 3501 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Trim27Q62158 Phf7-201ENSMUST00000022459 2084 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Trim27Q62158 Mif4gd-201ENSMUST00000021087 1372 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Trim27Q62158 Sytl3-204ENSMUST00000159880 1296 ntTSL 5 BASIC20.25■□□□□ 0.83
Trim27Q62158 Gm5091-201ENSMUST00000181658 1179 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
Trim27Q62158 4933412L11Rik-201ENSMUST00000203702 1044 ntBASIC20.25■□□□□ 0.83
Trim27Q62158 Sdhaf4-201ENSMUST00000027338 683 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Trim27Q62158 Mtnr1b-201ENSMUST00000057920 1095 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Trim27Q62158 Snx12-201ENSMUST00000077876 1002 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
Trim27Q62158 Klhdc10-201ENSMUST00000068240 3951 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
Trim27Q62158 Mir22hg-202ENSMUST00000149940 1752 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
Trim27Q62158 Irf7-202ENSMUST00000097952 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
Retrieved 100 of 76,532 protein–RNA pairs in 27.1 ms