Protein–RNA interactions for Protein: Q5R1F6

Trav5d-4, T cell receptor alpha variable 5D-4 (Fragment), mousemouse

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav5d-4Q5R1F6 Prok1-201ENSMUST00000049852 813 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Trav5d-4Q5R1F6 Gpr150-201ENSMUST00000056130 2146 ntAPPRIS P1 BASIC14.21□□□□□ -0.13
Trav5d-4Q5R1F6 Gm20460-201ENSMUST00000168709 1572 ntTSL 5 BASIC14.21□□□□□ -0.14
Trav5d-4Q5R1F6 Nptn-212ENSMUST00000177292 1390 ntAPPRIS P1 TSL 5 BASIC14.21□□□□□ -0.14
Trav5d-4Q5R1F6 Rogdi-207ENSMUST00000202281 1355 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
Trav5d-4Q5R1F6 Tbc1d13-201ENSMUST00000044556 3595 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
Trav5d-4Q5R1F6 Gm26803-201ENSMUST00000181705 2011 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
Trav5d-4Q5R1F6 Ehmt2-204ENSMUST00000114033 3882 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
Trav5d-4Q5R1F6 Map2k5-201ENSMUST00000034920 2310 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Trav5d-4Q5R1F6 Gm37166-201ENSMUST00000195473 2474 ntBASIC14.2□□□□□ -0.14
Trav5d-4Q5R1F6 Pqlc1-202ENSMUST00000091798 1989 ntAPPRIS P3 TSL 5 BASIC14.2□□□□□ -0.14
Trav5d-4Q5R1F6 Crtac1-201ENSMUST00000048630 2616 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Trav5d-4Q5R1F6 Tnks-201ENSMUST00000033929 9163 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Trav5d-4Q5R1F6 Klc1-202ENSMUST00000118471 2272 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
Trav5d-4Q5R1F6 Dnm2-204ENSMUST00000165766 3063 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
Trav5d-4Q5R1F6 Tmem229a-201ENSMUST00000127247 5157 ntAPPRIS P1 BASIC14.2□□□□□ -0.14
Trav5d-4Q5R1F6 Fezf1-201ENSMUST00000031709 2409 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Trav5d-4Q5R1F6 Tubb6-201ENSMUST00000001513 1757 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Trav5d-4Q5R1F6 Bhlhe41-201ENSMUST00000032386 6133 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Trav5d-4Q5R1F6 Disc1-201ENSMUST00000074562 2597 ntAPPRIS ALT2 TSL 5 BASIC14.2□□□□□ -0.14
Trav5d-4Q5R1F6 Disc1-203ENSMUST00000098311 2597 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
Trav5d-4Q5R1F6 Abhd16a-201ENSMUST00000007251 1945 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Trav5d-4Q5R1F6 Tle2-213ENSMUST00000146358 2749 ntAPPRIS P3 TSL 1 (best) BASIC14.2□□□□□ -0.14
Trav5d-4Q5R1F6 Leprotl1-201ENSMUST00000033910 2879 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Trav5d-4Q5R1F6 Cd5-201ENSMUST00000025571 2069 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Trav5d-4Q5R1F6 Pabpc1l2b-ps-201ENSMUST00000124538 690 ntBASIC14.2□□□□□ -0.14
Trav5d-4Q5R1F6 Lamtor5-201ENSMUST00000145735 881 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
Trav5d-4Q5R1F6 Gm20403-201ENSMUST00000173803 372 ntAPPRIS P1 BASIC14.2□□□□□ -0.14
Trav5d-4Q5R1F6 Gm19610-201ENSMUST00000202894 408 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
Trav5d-4Q5R1F6 Cmc1-201ENSMUST00000044220 1169 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Trav5d-4Q5R1F6 Dcdc2c-206ENSMUST00000221349 2209 ntAPPRIS P1 TSL 5 BASIC14.2□□□□□ -0.14
Trav5d-4Q5R1F6 Wnt1-201ENSMUST00000023734 2378 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Trav5d-4Q5R1F6 Ykt6-201ENSMUST00000002818 2541 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Trav5d-4Q5R1F6 Wipf1-202ENSMUST00000102679 2039 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Trav5d-4Q5R1F6 Trim7-201ENSMUST00000046903 2161 ntAPPRIS P1 TSL 5 BASIC14.2□□□□□ -0.14
Trav5d-4Q5R1F6 Atp5a1-201ENSMUST00000026495 2471 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Trav5d-4Q5R1F6 Mta1-203ENSMUST00000109723 2790 ntAPPRIS ALT2 TSL 5 BASIC14.2□□□□□ -0.14
Trav5d-4Q5R1F6 Mta1-204ENSMUST00000109726 2775 ntAPPRIS P3 TSL 1 (best) BASIC14.2□□□□□ -0.14
Trav5d-4Q5R1F6 Mta1-205ENSMUST00000109727 2789 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
Trav5d-4Q5R1F6 Zic5-201ENSMUST00000039118 4767 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Trav5d-4Q5R1F6 Glis1-201ENSMUST00000046005 2906 ntAPPRIS P2 TSL 1 (best) BASIC14.2□□□□□ -0.14
Trav5d-4Q5R1F6 Urgcp-201ENSMUST00000053427 5527 ntAPPRIS ALT2 TSL 5 BASIC14.2□□□□□ -0.14
Trav5d-4Q5R1F6 Rassf7-201ENSMUST00000046890 1525 ntAPPRIS P2 TSL 1 (best) BASIC14.2□□□□□ -0.14
Trav5d-4Q5R1F6 Chmp2b-201ENSMUST00000004965 1838 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Trav5d-4Q5R1F6 Dyx1c1-201ENSMUST00000034734 1975 ntAPPRIS P3 TSL 1 (best) BASIC14.2□□□□□ -0.14
Trav5d-4Q5R1F6 Pfkfb4-201ENSMUST00000051873 3316 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
Trav5d-4Q5R1F6 Ccdc71l-201ENSMUST00000172332 4240 ntAPPRIS P1 BASIC14.2□□□□□ -0.14
Trav5d-4Q5R1F6 Csnk1e-201ENSMUST00000117786 2694 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Trav5d-4Q5R1F6 Fmnl3-201ENSMUST00000081224 4137 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.14
Trav5d-4Q5R1F6 Hmg20b-213ENSMUST00000167481 1321 ntAPPRIS P1 TSL 5 BASIC14.19□□□□□ -0.14
Trav5d-4Q5R1F6 Pde8b-214ENSMUST00000172104 2493 ntAPPRIS ALT2 TSL 5 BASIC14.19□□□□□ -0.14
Trav5d-4Q5R1F6 Nmt2-203ENSMUST00000102989 2162 ntAPPRIS P1 TSL 5 BASIC14.19□□□□□ -0.14
Trav5d-4Q5R1F6 Slco3a1-201ENSMUST00000026897 4589 ntAPPRIS P4 TSL 1 (best) BASIC14.19□□□□□ -0.14
Trav5d-4Q5R1F6 Adra2c-201ENSMUST00000049545 3445 ntAPPRIS P1 BASIC14.19□□□□□ -0.14
Trav5d-4Q5R1F6 Pskh1-201ENSMUST00000049699 3255 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Trav5d-4Q5R1F6 Dbnl-202ENSMUST00000102928 2295 ntAPPRIS P3 TSL 1 (best) BASIC14.19□□□□□ -0.14
Trav5d-4Q5R1F6 Stambp-206ENSMUST00000206400 2144 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Trav5d-4Q5R1F6 Gm45618-201ENSMUST00000209890 660 ntAPPRIS P1 BASIC14.19□□□□□ -0.14
Trav5d-4Q5R1F6 Fgf8-202ENSMUST00000026241 1168 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
Trav5d-4Q5R1F6 Perp-201ENSMUST00000019998 1952 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Trav5d-4Q5R1F6 Acvrl1-203ENSMUST00000119063 1818 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Trav5d-4Q5R1F6 Ttbk1-201ENSMUST00000047034 6959 ntAPPRIS P2 TSL 5 BASIC14.19□□□□□ -0.14
Trav5d-4Q5R1F6 Gm7008-201ENSMUST00000038121 1366 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
Trav5d-4Q5R1F6 Rassf1-202ENSMUST00000093786 1787 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Trav5d-4Q5R1F6 Chrd-202ENSMUST00000115423 2417 ntTSL 2 BASIC14.19□□□□□ -0.14
Trav5d-4Q5R1F6 Slmap-203ENSMUST00000102956 5476 ntAPPRIS P3 TSL 5 BASIC14.18□□□□□ -0.14
Trav5d-4Q5R1F6 Slc8a3-202ENSMUST00000085238 4927 ntAPPRIS ALT1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Trav5d-4Q5R1F6 Sh2b3-201ENSMUST00000040308 2530 ntAPPRIS P3 TSL 1 (best) BASIC14.18□□□□□ -0.14
Trav5d-4Q5R1F6 Wipi2-201ENSMUST00000036872 5171 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Trav5d-4Q5R1F6 4930455H04Rik-201ENSMUST00000117592 1341 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Trav5d-4Q5R1F6 Adss-201ENSMUST00000016105 2771 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Trav5d-4Q5R1F6 H2-Q10-202ENSMUST00000174525 1991 ntAPPRIS P1 TSL 5 BASIC14.18□□□□□ -0.14
Trav5d-4Q5R1F6 Phf7-203ENSMUST00000226565 1971 ntBASIC14.18□□□□□ -0.14
Trav5d-4Q5R1F6 Cdk9-202ENSMUST00000120105 1565 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Trav5d-4Q5R1F6 Zdhhc1-203ENSMUST00000212303 2056 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Trav5d-4Q5R1F6 Gm7854-202ENSMUST00000187409 1433 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Trav5d-4Q5R1F6 Entpd7-201ENSMUST00000081079 5911 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Trav5d-4Q5R1F6 Kctd6-202ENSMUST00000170111 3052 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Trav5d-4Q5R1F6 Hmgn2-204ENSMUST00000105893 973 ntTSL 3 BASIC14.18□□□□□ -0.14
Trav5d-4Q5R1F6 Gm13559-201ENSMUST00000120476 863 ntBASIC14.18□□□□□ -0.14
Trav5d-4Q5R1F6 Calu-208ENSMUST00000173694 611 ntTSL 5 BASIC14.18□□□□□ -0.14
Trav5d-4Q5R1F6 AC159205.6-201ENSMUST00000224935 887 ntBASIC14.18□□□□□ -0.14
Trav5d-4Q5R1F6 Ndufs2-202ENSMUST00000111318 1545 ntTSL 5 BASIC14.18□□□□□ -0.14
Trav5d-4Q5R1F6 Carmil2-201ENSMUST00000062574 2526 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Trav5d-4Q5R1F6 Nfe2-208ENSMUST00000149111 1878 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Trav5d-4Q5R1F6 Cgn-204ENSMUST00000155485 2361 ntTSL 2 BASIC14.18□□□□□ -0.14
Trav5d-4Q5R1F6 Gm6190-201ENSMUST00000220683 1374 ntBASIC14.18□□□□□ -0.14
Trav5d-4Q5R1F6 Was-201ENSMUST00000033505 2114 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Trav5d-4Q5R1F6 Igdcc3-201ENSMUST00000034961 3146 ntAPPRIS P2 TSL 1 (best) BASIC14.18□□□□□ -0.14
Trav5d-4Q5R1F6 Nox4-202ENSMUST00000068829 1861 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
Trav5d-4Q5R1F6 Mtfr1l-202ENSMUST00000116279 1969 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Trav5d-4Q5R1F6 Gfra2-202ENSMUST00000227633 1480 ntBASIC14.18□□□□□ -0.14
Trav5d-4Q5R1F6 Tcf24-202ENSMUST00000185184 4193 ntAPPRIS P1 TSL 5 BASIC14.18□□□□□ -0.14
Trav5d-4Q5R1F6 Il3ra-203ENSMUST00000224163 2315 ntAPPRIS P2 BASIC14.18□□□□□ -0.14
Trav5d-4Q5R1F6 Ints8-201ENSMUST00000044616 3433 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Trav5d-4Q5R1F6 Kctd12-202ENSMUST00000184744 6057 ntAPPRIS P1 BASIC14.18□□□□□ -0.14
Trav5d-4Q5R1F6 Krt27-201ENSMUST00000017732 1550 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Trav5d-4Q5R1F6 4930448E22Rik-201ENSMUST00000181712 1581 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Trav5d-4Q5R1F6 Sphk1-202ENSMUST00000063446 2527 ntAPPRIS ALT2 TSL 2 BASIC14.17□□□□□ -0.14
Trav5d-4Q5R1F6 Kcnq2-204ENSMUST00000103047 2899 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Retrieved 100 of 76,532 protein–RNA pairs in 21.8 ms