Protein–RNA interactions for Protein: Q00780

Col8a1, Collagen alpha-1(VIII) chain, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col8a1Q00780 Nedd4l-202ENSMUST00000163516 8163 ntAPPRIS P1 TSL 5 BASIC14.05□□□□□ -0.16
Col8a1Q00780 Zfp697-202ENSMUST00000178372 4703 ntAPPRIS P1 TSL 5 BASIC14.05□□□□□ -0.16
Col8a1Q00780 Lrp5-201ENSMUST00000025856 5161 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Col8a1Q00780 Ascl2-201ENSMUST00000009392 1605 ntAPPRIS P2 TSL 1 (best) BASIC14.05□□□□□ -0.16
Col8a1Q00780 Mmd-202ENSMUST00000107887 1654 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
Col8a1Q00780 Syngap1-204ENSMUST00000194598 6011 ntAPPRIS P2 TSL 5 BASIC14.05□□□□□ -0.16
Col8a1Q00780 Gss-203ENSMUST00000130881 1724 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
Col8a1Q00780 Mrpl10-201ENSMUST00000001485 1708 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Col8a1Q00780 Prkaca-201ENSMUST00000005606 2276 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Col8a1Q00780 Zscan25-201ENSMUST00000094116 1796 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Col8a1Q00780 Zscan10-204ENSMUST00000118369 1006 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
Col8a1Q00780 1700045H11Rik-201ENSMUST00000128056 593 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
Col8a1Q00780 Rbmx-206ENSMUST00000143310 1296 ntTSL 5 BASIC14.05□□□□□ -0.16
Col8a1Q00780 Gm13830-202ENSMUST00000144202 381 ntTSL 3 BASIC14.05□□□□□ -0.16
Col8a1Q00780 Dbi-207ENSMUST00000151708 491 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
Col8a1Q00780 Gm13849-201ENSMUST00000153328 835 ntTSL 5 BASIC14.05□□□□□ -0.16
Col8a1Q00780 Ubl5-204ENSMUST00000160682 489 ntAPPRIS P1 TSL 5 BASIC14.05□□□□□ -0.16
Col8a1Q00780 Nudt14-203ENSMUST00000221497 355 ntTSL 2 BASIC14.05□□□□□ -0.16
Col8a1Q00780 AC154222.1-201ENSMUST00000223882 475 ntBASIC14.05□□□□□ -0.16
Col8a1Q00780 Med29-201ENSMUST00000003536 1281 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Col8a1Q00780 Bhlha9-201ENSMUST00000056184 1207 ntAPPRIS P1 BASIC14.05□□□□□ -0.16
Col8a1Q00780 Methig1-201ENSMUST00000075675 1029 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Col8a1Q00780 Lce3f-201ENSMUST00000090863 611 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Col8a1Q00780 Ppp1r3g-203ENSMUST00000225537 2389 ntAPPRIS P1 BASIC14.05□□□□□ -0.16
Col8a1Q00780 Ube2j2-203ENSMUST00000105581 1391 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Col8a1Q00780 Rab3a-201ENSMUST00000034301 1363 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Col8a1Q00780 Mturn-203ENSMUST00000190641 5303 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Col8a1Q00780 Hoxa1-202ENSMUST00000120363 2043 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
Col8a1Q00780 Agfg1-205ENSMUST00000187899 2078 ntTSL 5 BASIC14.05□□□□□ -0.16
Col8a1Q00780 Sdk1-202ENSMUST00000085774 10352 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Col8a1Q00780 3110002H16Rik-201ENSMUST00000025276 2170 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Col8a1Q00780 Tubgcp4-203ENSMUST00000110658 4250 ntAPPRIS ALT1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Col8a1Q00780 Htr6-202ENSMUST00000105802 2341 ntAPPRIS P1 TSL 5 BASIC14.04□□□□□ -0.16
Col8a1Q00780 Fhl3-201ENSMUST00000038684 1664 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
Col8a1Q00780 P2rx5-201ENSMUST00000006104 2395 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Col8a1Q00780 Slc25a35-202ENSMUST00000102606 1828 ntAPPRIS P2 TSL 1 (best) BASIC14.04□□□□□ -0.16
Col8a1Q00780 Mfsd4a-203ENSMUST00000112370 2565 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
Col8a1Q00780 Urgcp-206ENSMUST00000170116 5528 ntAPPRIS ALT2 TSL 5 BASIC14.04□□□□□ -0.16
Col8a1Q00780 AC163637.2-201ENSMUST00000213826 1945 ntAPPRIS P1 TSL 2 BASIC14.04□□□□□ -0.16
Col8a1Q00780 Nt5c-202ENSMUST00000106530 836 ntTSL 3 BASIC14.04□□□□□ -0.16
Col8a1Q00780 Gm15173-201ENSMUST00000122049 433 ntBASIC14.04□□□□□ -0.16
Col8a1Q00780 Sec22b-202ENSMUST00000122288 1177 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
Col8a1Q00780 Ciao1-204ENSMUST00000174030 1109 ntTSL 5 BASIC14.04□□□□□ -0.16
Col8a1Q00780 Gm27000-201ENSMUST00000182943 842 ntBASIC14.04□□□□□ -0.16
Col8a1Q00780 Urah-204ENSMUST00000185612 716 ntAPPRIS P3 TSL 3 BASIC14.04□□□□□ -0.16
Col8a1Q00780 Gm44107-201ENSMUST00000203242 573 ntTSL 2 BASIC14.04□□□□□ -0.16
Col8a1Q00780 Cmtm3-204ENSMUST00000212081 850 ntAPPRIS P1 TSL 5 BASIC14.04□□□□□ -0.16
Col8a1Q00780 Pdcd6-201ENSMUST00000022060 1131 ntAPPRIS P2 TSL 1 (best) BASIC14.04□□□□□ -0.16
Col8a1Q00780 CT009713.7-201ENSMUST00000224689 571 ntBASIC14.04□□□□□ -0.16
Col8a1Q00780 Ddx59-201ENSMUST00000027655 2166 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Col8a1Q00780 Snupn-201ENSMUST00000068856 1391 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Col8a1Q00780 Gm26892-201ENSMUST00000181695 1636 ntTSL 5 BASIC14.04□□□□□ -0.16
Col8a1Q00780 Gja4-201ENSMUST00000053753 1685 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Col8a1Q00780 Plcl1-201ENSMUST00000042986 6580 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Col8a1Q00780 Med14-201ENSMUST00000076016 2561 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
Col8a1Q00780 Map4k5-201ENSMUST00000049239 4452 ntAPPRIS ALT1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Col8a1Q00780 Arl4a-201ENSMUST00000101472 1200 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Col8a1Q00780 Arid2-202ENSMUST00000134985 809 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
Col8a1Q00780 Nudt6-208ENSMUST00000146324 1264 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
Col8a1Q00780 Tsfm-207ENSMUST00000152054 655 ntTSL 3 BASIC14.03□□□□□ -0.16
Col8a1Q00780 Fam71e1-204ENSMUST00000205422 366 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
Col8a1Q00780 Gm5186-201ENSMUST00000218781 920 ntBASIC14.03□□□□□ -0.16
Col8a1Q00780 March3-201ENSMUST00000035278 860 ntAPPRIS P1 TSL 3 BASIC14.03□□□□□ -0.16
Col8a1Q00780 Lce1l-201ENSMUST00000054426 670 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Col8a1Q00780 Mdk-202ENSMUST00000069423 773 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Col8a1Q00780 Hist1h2ak-201ENSMUST00000074752 393 ntAPPRIS P1 BASIC14.03□□□□□ -0.16
Col8a1Q00780 Tmem97-201ENSMUST00000103242 1375 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Col8a1Q00780 Ercc6l2-202ENSMUST00000021926 1592 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
Col8a1Q00780 Dtnbp1-203ENSMUST00000220555 1589 ntAPPRIS ALT2 TSL 5 BASIC14.03□□□□□ -0.16
Col8a1Q00780 Irf5-205ENSMUST00000167252 1693 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
Col8a1Q00780 Crhbp-201ENSMUST00000045583 1701 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
Col8a1Q00780 Gck-202ENSMUST00000109822 1786 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
Col8a1Q00780 Gm19721-201ENSMUST00000195284 1764 ntBASIC14.03□□□□□ -0.16
Col8a1Q00780 Mrgprf-202ENSMUST00000117718 1935 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
Col8a1Q00780 Lrrc57-204ENSMUST00000102499 1961 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Col8a1Q00780 Mpp3-203ENSMUST00000107167 2066 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
Col8a1Q00780 Dnajb14-201ENSMUST00000090178 9477 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Col8a1Q00780 Dag1-201ENSMUST00000080435 4364 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
Col8a1Q00780 Rnf146-202ENSMUST00000160144 4323 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
Col8a1Q00780 Lhx6-205ENSMUST00000112967 3378 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
Col8a1Q00780 Trpc4ap-202ENSMUST00000103140 3091 ntAPPRIS P3 TSL 1 (best) BASIC14.02□□□□□ -0.16
Col8a1Q00780 Hspa5-202ENSMUST00000100171 2613 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
Col8a1Q00780 Mtch2-205ENSMUST00000136872 2596 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
Col8a1Q00780 4921536K21Rik-201ENSMUST00000020712 2590 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
Col8a1Q00780 Tmem198-201ENSMUST00000050899 2456 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
Col8a1Q00780 Acbd4-203ENSMUST00000107040 1959 ntTSL 2 BASIC14.02□□□□□ -0.16
Col8a1Q00780 Snrnp48-201ENSMUST00000091641 1785 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
Col8a1Q00780 Tgds-201ENSMUST00000022727 1682 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
Col8a1Q00780 1700025L06Rik-203ENSMUST00000211477 1623 ntTSL 5 BASIC14.02□□□□□ -0.16
Col8a1Q00780 Ogfod2-201ENSMUST00000024470 1596 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
Col8a1Q00780 9430038I01Rik-202ENSMUST00000117404 699 ntAPPRIS ALT2 TSL 5 BASIC14.02□□□□□ -0.17
Col8a1Q00780 Bola3-202ENSMUST00000120040 583 ntTSL 3 BASIC14.02□□□□□ -0.17
Col8a1Q00780 Gm14057-201ENSMUST00000120631 482 ntBASIC14.02□□□□□ -0.17
Col8a1Q00780 2200002J24Rik-201ENSMUST00000013227 333 ntAPPRIS P1 TSL 3 BASIC14.02□□□□□ -0.17
Col8a1Q00780 Gm16191-201ENSMUST00000141445 520 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
Col8a1Q00780 Grtp1-201ENSMUST00000165605 1271 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
Col8a1Q00780 Ap2s1-204ENSMUST00000205607 372 ntTSL 3 BASIC14.02□□□□□ -0.17
Col8a1Q00780 Gm45144-201ENSMUST00000207473 354 ntTSL 5 BASIC14.02□□□□□ -0.17
Col8a1Q00780 5830454E08Rik-202ENSMUST00000213974 744 ntBASIC14.02□□□□□ -0.17
Col8a1Q00780 AC090659.1-201ENSMUST00000224334 768 ntBASIC14.02□□□□□ -0.17
Retrieved 100 of 76,532 protein–RNA pairs in 40.2 ms