Protein–RNA interactions for Protein: P63158

Hmgb1, High mobility group protein B1, mousemouse

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb1P63158 Gfra2-202ENSMUST00000227633 1480 ntBASIC18.14■□□□□ 0.49
Hmgb1P63158 Pnck-202ENSMUST00000114472 1532 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Hmgb1P63158 Exoc8-201ENSMUST00000098312 4598 ntAPPRIS P1 BASIC18.13■□□□□ 0.49
Hmgb1P63158 Hmgb3-202ENSMUST00000072699 1571 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Hmgb1P63158 Efr3a-201ENSMUST00000015146 5215 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Hmgb1P63158 Dvl2-201ENSMUST00000019362 2968 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Hmgb1P63158 Mff-212ENSMUST00000162003 2087 ntTSL 5 BASIC18.13■□□□□ 0.49
Hmgb1P63158 Ap1m1-201ENSMUST00000003117 2084 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Hmgb1P63158 Rfx7-202ENSMUST00000163401 7880 ntAPPRIS P1 TSL 2 BASIC18.13■□□□□ 0.49
Hmgb1P63158 G3bp2-204ENSMUST00000169094 2716 ntAPPRIS P3 TSL 1 (best) BASIC18.13■□□□□ 0.49
Hmgb1P63158 Pgpep1-208ENSMUST00000211715 676 ntTSL 3 BASIC18.13■□□□□ 0.49
Hmgb1P63158 Smim15-206ENSMUST00000226042 1092 ntAPPRIS P1 BASIC18.13■□□□□ 0.49
Hmgb1P63158 Mrps12-201ENSMUST00000056078 722 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Hmgb1P63158 Spef1-201ENSMUST00000028801 2328 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Hmgb1P63158 Hnrnpu-201ENSMUST00000037748 7640 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Hmgb1P63158 Hmg20b-213ENSMUST00000167481 1321 ntAPPRIS P1 TSL 5 BASIC18.13■□□□□ 0.49
Hmgb1P63158 Abhd5-204ENSMUST00000156520 3157 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Hmgb1P63158 Mid2-202ENSMUST00000112990 6271 ntAPPRIS P1 TSL 5 BASIC18.13■□□□□ 0.49
Hmgb1P63158 Actr8-201ENSMUST00000016115 2119 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Hmgb1P63158 Anapc7-201ENSMUST00000031422 2751 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Hmgb1P63158 March2-201ENSMUST00000066121 3400 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
Hmgb1P63158 Iars2-201ENSMUST00000027921 5471 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Hmgb1P63158 Rhot1-201ENSMUST00000017831 3029 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
Hmgb1P63158 Enah-202ENSMUST00000111024 3572 ntAPPRIS ALT2 TSL 5 BASIC18.12■□□□□ 0.49
Hmgb1P63158 Slc5a10-203ENSMUST00000148584 2049 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Hmgb1P63158 Slc1a6-201ENSMUST00000005490 2029 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Hmgb1P63158 Gm11539-201ENSMUST00000119837 557 ntBASIC18.12■□□□□ 0.49
Hmgb1P63158 Spdya-202ENSMUST00000124001 1247 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
Hmgb1P63158 Gm14453-201ENSMUST00000139677 553 ntTSL 3 BASIC18.12■□□□□ 0.49
Hmgb1P63158 Gm18115-201ENSMUST00000221209 621 ntBASIC18.12■□□□□ 0.49
Hmgb1P63158 Prss21-201ENSMUST00000024928 1094 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Hmgb1P63158 Nme2-202ENSMUST00000072566 734 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Hmgb1P63158 Tenm3-204ENSMUST00000110346 2267 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
Hmgb1P63158 Klc1-202ENSMUST00000118471 2272 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
Hmgb1P63158 Rogdi-207ENSMUST00000202281 1355 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Hmgb1P63158 Dnal4-201ENSMUST00000023055 1469 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Hmgb1P63158 Lrrc45-201ENSMUST00000026139 2492 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Hmgb1P63158 Eif2ak3-201ENSMUST00000034093 4513 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Hmgb1P63158 Krt27-201ENSMUST00000017732 1550 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Hmgb1P63158 Atp1a1-201ENSMUST00000036493 3679 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Hmgb1P63158 Prss8-201ENSMUST00000032988 1852 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Hmgb1P63158 Cspp1-203ENSMUST00000118263 2162 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
Hmgb1P63158 Krt6b-201ENSMUST00000023786 2226 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Hmgb1P63158 Psip1-201ENSMUST00000030207 3251 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Hmgb1P63158 Ndufaf8-201ENSMUST00000106223 781 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Hmgb1P63158 1110046J04Rik-201ENSMUST00000147622 397 ntTSL 3 BASIC18.11■□□□□ 0.49
Hmgb1P63158 Gm15889-201ENSMUST00000159142 1083 ntTSL 3 BASIC18.11■□□□□ 0.49
Hmgb1P63158 Cenps-207ENSMUST00000177408 689 ntTSL 2 BASIC18.11■□□□□ 0.49
Hmgb1P63158 Cpne1-217ENSMUST00000184265 871 ntTSL 5 BASIC18.11■□□□□ 0.49
Hmgb1P63158 Tmed3-201ENSMUST00000058488 1346 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Hmgb1P63158 Ube2e1-201ENSMUST00000022296 1408 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Hmgb1P63158 Gm14317-201ENSMUST00000151754 1464 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
Hmgb1P63158 Gm20460-201ENSMUST00000168709 1572 ntTSL 5 BASIC18.11■□□□□ 0.49
Hmgb1P63158 Klhdc8b-214ENSMUST00000195435 1612 ntTSL 5 BASIC18.11■□□□□ 0.49
Hmgb1P63158 Sdf4-203ENSMUST00000105578 1654 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Hmgb1P63158 Rbmxl1-201ENSMUST00000049245 1695 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Hmgb1P63158 Tubb6-201ENSMUST00000001513 1757 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Hmgb1P63158 Chst5-201ENSMUST00000034430 2182 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Hmgb1P63158 Shh-201ENSMUST00000002708 2847 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Hmgb1P63158 Dnm2-204ENSMUST00000165766 3063 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
Hmgb1P63158 Acbd3-201ENSMUST00000027780 3471 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Hmgb1P63158 Slc9a6-202ENSMUST00000114784 4449 ntTSL 5 BASIC18.11■□□□□ 0.49
Hmgb1P63158 Cadps2-201ENSMUST00000018122 4723 ntAPPRIS P3 TSL 5 BASIC18.11■□□□□ 0.49
Hmgb1P63158 Bcor-202ENSMUST00000065143 6839 ntAPPRIS P4 TSL 1 (best) BASIC18.1■□□□□ 0.49
Hmgb1P63158 Tcf24-202ENSMUST00000185184 4193 ntAPPRIS P1 TSL 5 BASIC18.1■□□□□ 0.49
Hmgb1P63158 Prkcb-201ENSMUST00000064921 2557 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
Hmgb1P63158 Cfap206-201ENSMUST00000029971 2246 ntAPPRIS P1 TSL 5 BASIC18.1■□□□□ 0.49
Hmgb1P63158 Mesp2-201ENSMUST00000107394 1944 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Hmgb1P63158 Cep152-201ENSMUST00000089776 5768 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Hmgb1P63158 Rabep1-201ENSMUST00000076270 5408 ntAPPRIS P2 TSL 1 (best) BASIC18.1■□□□□ 0.49
Hmgb1P63158 Slc6a1-204ENSMUST00000204074 1740 ntTSL 5 BASIC18.1■□□□□ 0.49
Hmgb1P63158 Irf5-205ENSMUST00000167252 1693 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
Hmgb1P63158 Pcolce-202ENSMUST00000054564 1585 ntAPPRIS ALT2 TSL 5 BASIC18.1■□□□□ 0.49
Hmgb1P63158 Klhdc10-201ENSMUST00000068240 3951 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
Hmgb1P63158 Zpbp2-205ENSMUST00000107513 1240 ntAPPRIS ALT2 TSL 5 BASIC18.1■□□□□ 0.49
Hmgb1P63158 Pgap3-205ENSMUST00000128897 1264 ntTSL 5 BASIC18.1■□□□□ 0.49
Hmgb1P63158 Khdc3-204ENSMUST00000173734 1228 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
Hmgb1P63158 Ddah2-204ENSMUST00000174493 1254 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
Hmgb1P63158 Gm4217-201ENSMUST00000182243 1002 ntBASIC18.1■□□□□ 0.49
Hmgb1P63158 Lce1m-201ENSMUST00000029520 874 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Hmgb1P63158 Irak1bp1-201ENSMUST00000034783 1159 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
Hmgb1P63158 Tmem91-201ENSMUST00000079439 877 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Hmgb1P63158 Kcmf1-201ENSMUST00000068697 3251 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Hmgb1P63158 Rcc1-203ENSMUST00000105951 2326 ntAPPRIS P1 TSL 5 BASIC18.1■□□□□ 0.49
Hmgb1P63158 Podnl1-201ENSMUST00000093380 2090 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Hmgb1P63158 Fam3a-206ENSMUST00000114143 1899 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Hmgb1P63158 Hnrnpl-202ENSMUST00000172529 1898 ntTSL 5 BASIC18.09■□□□□ 0.49
Hmgb1P63158 Cops6-201ENSMUST00000019638 1787 ntAPPRIS P2 TSL 1 (best) BASIC18.09■□□□□ 0.49
Hmgb1P63158 Adcy7-203ENSMUST00000169037 5198 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Hmgb1P63158 Celf6-204ENSMUST00000121266 2610 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
Hmgb1P63158 Pola2-202ENSMUST00000165143 2397 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
Hmgb1P63158 Trim14-201ENSMUST00000046897 1429 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Hmgb1P63158 Klf9-201ENSMUST00000036884 3263 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Hmgb1P63158 Pex5-202ENSMUST00000080557 3073 ntAPPRIS ALT1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Hmgb1P63158 Ndufb2-202ENSMUST00000119379 455 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Hmgb1P63158 Smim14-202ENSMUST00000121661 1056 ntAPPRIS P1 TSL 3 BASIC18.09■□□□□ 0.49
Hmgb1P63158 Gm13474-201ENSMUST00000122466 815 ntBASIC18.09■□□□□ 0.49
Hmgb1P63158 Tpsg1-202ENSMUST00000160377 1040 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
Hmgb1P63158 Snrnp48-202ENSMUST00000178564 847 ntTSL 5 BASIC18.09■□□□□ 0.49
Hmgb1P63158 Gng11-201ENSMUST00000031670 919 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Retrieved 100 of 76,532 protein–RNA pairs in 25.9 ms