Protein–RNA interactions for Protein: B1AR17

Chd3, Chromodomain helicase DNA-binding protein 3, mousemouse

Predictions only

Length 2,055 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chd3B1AR17 Krt28-201ENSMUST00000006963 1624 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Chd3B1AR17 Agpat3-201ENSMUST00000001240 5980 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Chd3B1AR17 Glra1-202ENSMUST00000102716 2390 ntAPPRIS P3 TSL 1 (best) BASIC16.11■□□□□ 0.17
Chd3B1AR17 Eif2b4-201ENSMUST00000077693 2025 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Chd3B1AR17 Saysd1-201ENSMUST00000059666 2315 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Chd3B1AR17 Plppr2-203ENSMUST00000190387 2608 ntAPPRIS P2 TSL 1 (best) BASIC16.11■□□□□ 0.17
Chd3B1AR17 Dcdc2c-206ENSMUST00000221349 2209 ntAPPRIS P1 TSL 5 BASIC16.11■□□□□ 0.17
Chd3B1AR17 Marveld1-201ENSMUST00000061111 3066 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Chd3B1AR17 Tmem233-201ENSMUST00000111997 2477 ntAPPRIS P1 TSL 2 BASIC16.11■□□□□ 0.17
Chd3B1AR17 Gm27029-201ENSMUST00000107257 1898 ntAPPRIS ALT2 TSL 5 BASIC16.11■□□□□ 0.17
Chd3B1AR17 G3bp2-204ENSMUST00000169094 2716 ntAPPRIS P3 TSL 1 (best) BASIC16.11■□□□□ 0.17
Chd3B1AR17 Cnot9-201ENSMUST00000087215 3268 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Chd3B1AR17 2310009B15Rik-201ENSMUST00000112025 565 ntAPPRIS P1 TSL 2 BASIC16.11■□□□□ 0.17
Chd3B1AR17 Fmnl2-204ENSMUST00000127122 5508 ntTSL 5 BASIC16.11■□□□□ 0.17
Chd3B1AR17 Erdr1-203ENSMUST00000179077 887 ntAPPRIS ALT2 TSL 5 BASIC16.11■□□□□ 0.17
Chd3B1AR17 Gm40457-201ENSMUST00000205319 1174 ntTSL 5 BASIC16.11■□□□□ 0.17
Chd3B1AR17 Gm26580-201ENSMUST00000181002 2095 ntTSL 5 BASIC16.11■□□□□ 0.17
Chd3B1AR17 Impdh1-202ENSMUST00000159124 2600 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Chd3B1AR17 Mir22hg-202ENSMUST00000149940 1752 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
Chd3B1AR17 Ift74-202ENSMUST00000107104 1713 ntTSL 2 BASIC16.11■□□□□ 0.17
Chd3B1AR17 Stim2-204ENSMUST00000201469 4892 ntAPPRIS ALT2 TSL 5 BASIC16.11■□□□□ 0.17
Chd3B1AR17 Tmed9-201ENSMUST00000109905 1420 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Chd3B1AR17 Cul1-201ENSMUST00000031697 3161 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Chd3B1AR17 Cdv3-201ENSMUST00000035484 3387 ntAPPRIS P3 TSL 1 (best) BASIC16.11■□□□□ 0.17
Chd3B1AR17 Uba52-203ENSMUST00000125184 711 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Chd3B1AR17 Snrpf-201ENSMUST00000020203 861 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Chd3B1AR17 Mafg-201ENSMUST00000058162 4923 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Chd3B1AR17 Il10rb-201ENSMUST00000023691 1850 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Chd3B1AR17 Trim31-201ENSMUST00000078438 2257 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Chd3B1AR17 Gab2-201ENSMUST00000004622 6168 ntAPPRIS P3 TSL 1 (best) BASIC16.1■□□□□ 0.17
Chd3B1AR17 Ivns1abp-203ENSMUST00000111887 2783 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
Chd3B1AR17 Ogfod3-201ENSMUST00000026169 1308 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Chd3B1AR17 Slk-201ENSMUST00000026043 7278 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
Chd3B1AR17 1700020A23Rik-202ENSMUST00000110281 521 ntAPPRIS P1 TSL 3 BASIC16.1■□□□□ 0.17
Chd3B1AR17 Drap1-202ENSMUST00000113673 744 ntTSL 2 BASIC16.1■□□□□ 0.17
Chd3B1AR17 Cgrrf1-204ENSMUST00000140114 419 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
Chd3B1AR17 Gm26871-202ENSMUST00000180774 695 ntTSL 2 BASIC16.1■□□□□ 0.17
Chd3B1AR17 Gm45890-204ENSMUST00000212356 545 ntTSL 2 BASIC16.1■□□□□ 0.17
Chd3B1AR17 Mgarp-201ENSMUST00000038154 1232 ntAPPRIS P2 TSL 1 (best) BASIC16.1■□□□□ 0.17
Chd3B1AR17 Mta1-201ENSMUST00000009099 2826 ntAPPRIS ALT2 TSL 5 BASIC16.1■□□□□ 0.17
Chd3B1AR17 Atxn7l2-204ENSMUST00000119650 2274 ntTSL 5 BASIC16.1■□□□□ 0.17
Chd3B1AR17 Vkorc1l1-203ENSMUST00000201855 4809 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
Chd3B1AR17 Dlg5-202ENSMUST00000073687 7784 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
Chd3B1AR17 Tlk2-204ENSMUST00000106941 3699 ntAPPRIS ALT1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Chd3B1AR17 Mansc4-201ENSMUST00000100780 1125 ntAPPRIS P2 TSL 1 (best) BASIC16.09■□□□□ 0.17
Chd3B1AR17 Scml4-203ENSMUST00000105495 1033 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
Chd3B1AR17 Otud5-202ENSMUST00000115665 3821 ntTSL 5 BASIC16.09■□□□□ 0.17
Chd3B1AR17 Ssr2-205ENSMUST00000193934 569 ntTSL 3 BASIC16.09■□□□□ 0.17
Chd3B1AR17 Cmtm5-203ENSMUST00000227441 610 ntBASIC16.09■□□□□ 0.17
Chd3B1AR17 Nmu-201ENSMUST00000031146 828 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Chd3B1AR17 Timm8a2-201ENSMUST00000045976 913 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Chd3B1AR17 Gm5617-201ENSMUST00000048824 531 ntAPPRIS P1 BASIC16.09■□□□□ 0.17
Chd3B1AR17 Rfesd-203ENSMUST00000179078 1436 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Chd3B1AR17 Cnr1-201ENSMUST00000057188 5807 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Chd3B1AR17 Gabbr1-201ENSMUST00000025338 5248 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Chd3B1AR17 B020017C02Rik-201ENSMUST00000197444 1688 ntBASIC16.09■□□□□ 0.17
Chd3B1AR17 2810013P06Rik-201ENSMUST00000186531 2137 ntBASIC16.09■□□□□ 0.17
Chd3B1AR17 Ttyh3-202ENSMUST00000197452 4576 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
Chd3B1AR17 1810013L24Rik-201ENSMUST00000023150 4066 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Chd3B1AR17 Trmt112-202ENSMUST00000116551 985 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Chd3B1AR17 Gm12895-201ENSMUST00000122214 226 ntBASIC16.09■□□□□ 0.17
Chd3B1AR17 Gm13446-201ENSMUST00000124555 2033 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
Chd3B1AR17 Eapp-203ENSMUST00000160085 676 ntTSL 3 BASIC16.09■□□□□ 0.17
Chd3B1AR17 Epsti1-202ENSMUST00000169978 1175 ntAPPRIS ALT2 TSL 5 BASIC16.09■□□□□ 0.17
Chd3B1AR17 Gm7506-201ENSMUST00000207758 815 ntBASIC16.09■□□□□ 0.17
Chd3B1AR17 Epsti1-203ENSMUST00000227903 1178 ntAPPRIS ALT2 BASIC16.09■□□□□ 0.17
Chd3B1AR17 Fcnb-201ENSMUST00000028179 1170 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Chd3B1AR17 Hist1h1a-201ENSMUST00000055770 741 ntAPPRIS P1 BASIC16.09■□□□□ 0.17
Chd3B1AR17 Gm5867-201ENSMUST00000063197 592 ntBASIC16.09■□□□□ 0.17
Chd3B1AR17 Slc35e1-202ENSMUST00000152080 4383 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Chd3B1AR17 Klf9-201ENSMUST00000036884 3263 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
Chd3B1AR17 Wscd1-202ENSMUST00000108510 2956 ntAPPRIS P1 TSL 5 BASIC16.08■□□□□ 0.17
Chd3B1AR17 Sclt1-201ENSMUST00000026866 3005 ntAPPRIS P1 TSL 5 BASIC16.08■□□□□ 0.17
Chd3B1AR17 Bicdl1-201ENSMUST00000055408 3026 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
Chd3B1AR17 Pigt-201ENSMUST00000103101 2562 ntAPPRIS P2 TSL 1 (best) BASIC16.08■□□□□ 0.17
Chd3B1AR17 Dnajc2-204ENSMUST00000115195 1994 ntTSL 5 BASIC16.08■□□□□ 0.16
Chd3B1AR17 Hspa8-201ENSMUST00000015800 2394 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
Chd3B1AR17 Dgcr6-208ENSMUST00000153123 920 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
Chd3B1AR17 Ndufb9-201ENSMUST00000022980 704 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
Chd3B1AR17 Dgcr6-202ENSMUST00000076757 894 ntTSL 5 BASIC16.08■□□□□ 0.16
Chd3B1AR17 Olfr601-201ENSMUST00000080474 990 ntAPPRIS P1 BASIC16.08■□□□□ 0.16
Chd3B1AR17 Fam109a-203ENSMUST00000198271 2335 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
Chd3B1AR17 Trpc4ap-201ENSMUST00000041059 3204 ntAPPRIS ALT2 TSL 1 (best) BASIC16.08■□□□□ 0.16
Chd3B1AR17 Gm9889-202ENSMUST00000206983 1577 ntBASIC16.08■□□□□ 0.16
Chd3B1AR17 Cdk17-201ENSMUST00000069965 3615 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
Chd3B1AR17 Borcs5-201ENSMUST00000062755 1764 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Chd3B1AR17 Zkscan8-202ENSMUST00000110481 728 ntTSL 2 BASIC16.07■□□□□ 0.16
Chd3B1AR17 Naa10-206ENSMUST00000114391 834 ntTSL 5 BASIC16.07■□□□□ 0.16
Chd3B1AR17 Zscan10-204ENSMUST00000118369 1006 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
Chd3B1AR17 Gm15690-201ENSMUST00000128728 432 ntTSL 3 BASIC16.07■□□□□ 0.16
Chd3B1AR17 Bag2-203ENSMUST00000187602 378 ntTSL 2 BASIC16.07■□□□□ 0.16
Chd3B1AR17 AC153556.1-201ENSMUST00000215135 794 ntTSL 5 BASIC16.07■□□□□ 0.16
Chd3B1AR17 Mzt1-203ENSMUST00000227948 952 ntBASIC16.07■□□□□ 0.16
Chd3B1AR17 Dcps-201ENSMUST00000034539 1274 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Chd3B1AR17 Mgat1-201ENSMUST00000081794 2976 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Chd3B1AR17 Aspscr1-204ENSMUST00000106159 1615 ntTSL 5 BASIC16.07■□□□□ 0.16
Chd3B1AR17 Slc7a5-201ENSMUST00000045557 3517 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Chd3B1AR17 Brpf3-201ENSMUST00000004985 5766 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Chd3B1AR17 E230001N04Rik-202ENSMUST00000181029 2091 ntBASIC16.07■□□□□ 0.16
Chd3B1AR17 Pi4kb-202ENSMUST00000107251 2895 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
Retrieved 100 of 76,532 protein–RNA pairs in 21.9 ms