Protein–RNA interactions for Protein: Q9R053

Scn11a, Sodium channel protein type 11 subunit alpha, mousemouse

Predictions only

Length 1,765 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn11aQ9R053 1700045H11Rik-201ENSMUST00000128056 593 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
Scn11aQ9R053 Gm42670-201ENSMUST00000201816 1292 ntBASIC19.55■□□□□ 0.72
Scn11aQ9R053 Gm20383-201ENSMUST00000203799 1227 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
Scn11aQ9R053 Gm9172-201ENSMUST00000212092 954 ntBASIC19.55■□□□□ 0.72
Scn11aQ9R053 Tomm20l-201ENSMUST00000021482 578 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Scn11aQ9R053 Anapc15-202ENSMUST00000035395 836 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
Scn11aQ9R053 Rogdi-202ENSMUST00000090453 652 ntTSL 5 BASIC19.55■□□□□ 0.72
Scn11aQ9R053 Sf1-202ENSMUST00000113487 2649 ntAPPRIS ALT1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Scn11aQ9R053 Dcaf12l2-201ENSMUST00000115057 2885 ntAPPRIS P1 BASIC19.54■□□□□ 0.72
Scn11aQ9R053 Cdc27-202ENSMUST00000106961 1863 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
Scn11aQ9R053 Surf4-201ENSMUST00000015011 3281 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Scn11aQ9R053 Pofut2-201ENSMUST00000020493 2290 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Scn11aQ9R053 Fam221a-202ENSMUST00000121903 1304 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
Scn11aQ9R053 Tfap2b-202ENSMUST00000064976 1946 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
Scn11aQ9R053 Rnaseh2a-202ENSMUST00000109736 2981 ntAPPRIS P1 TSL 5 BASIC19.54■□□□□ 0.72
Scn11aQ9R053 B9d2-201ENSMUST00000108403 1021 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Scn11aQ9R053 Rbm14-203ENSMUST00000180008 370 ntTSL 5 BASIC19.54■□□□□ 0.72
Scn11aQ9R053 Washc3-203ENSMUST00000182183 838 ntAPPRIS ALT2 TSL 2 BASIC19.54■□□□□ 0.72
Scn11aQ9R053 AC117588.1-201ENSMUST00000228510 999 ntBASIC19.54■□□□□ 0.72
Scn11aQ9R053 Lce3b-201ENSMUST00000046234 562 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Scn11aQ9R053 Fam159a-201ENSMUST00000053157 593 ntAPPRIS P1 TSL 5 BASIC19.54■□□□□ 0.72
Scn11aQ9R053 Dand5-201ENSMUST00000065539 1584 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Scn11aQ9R053 Fbxl21-201ENSMUST00000045428 1965 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Scn11aQ9R053 Igf2bp2-201ENSMUST00000100052 3899 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Scn11aQ9R053 Nfe2-208ENSMUST00000149111 1878 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Scn11aQ9R053 Cdc42ep3-201ENSMUST00000068958 1967 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Scn11aQ9R053 Egln1-201ENSMUST00000034469 3594 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Scn11aQ9R053 1700008O03Rik-201ENSMUST00000107933 913 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Scn11aQ9R053 Gm15246-201ENSMUST00000149873 540 ntTSL 3 BASIC19.53■□□□□ 0.72
Scn11aQ9R053 Gm21887-203ENSMUST00000180251 531 ntAPPRIS P5 TSL 5 BASIC19.53■□□□□ 0.72
Scn11aQ9R053 Gm6376-201ENSMUST00000209407 580 ntBASIC19.53■□□□□ 0.72
Scn11aQ9R053 Chmp2a-201ENSMUST00000005711 949 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Scn11aQ9R053 Ube2j2-203ENSMUST00000105581 1391 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Scn11aQ9R053 Rpf1-203ENSMUST00000199079 1978 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
Scn11aQ9R053 Ankrd40-203ENSMUST00000107818 3487 ntAPPRIS P3 TSL 5 BASIC19.53■□□□□ 0.72
Scn11aQ9R053 Tmprss5-201ENSMUST00000070390 2047 ntAPPRIS P2 TSL 1 (best) BASIC19.52■□□□□ 0.72
Scn11aQ9R053 Zc3h14-203ENSMUST00000110104 3146 ntTSL 5 BASIC19.52■□□□□ 0.72
Scn11aQ9R053 Krt83-201ENSMUST00000023718 1756 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
Scn11aQ9R053 Frs3os-201ENSMUST00000136531 978 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
Scn11aQ9R053 Gm3764-206ENSMUST00000181356 1088 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
Scn11aQ9R053 Urah-204ENSMUST00000185612 716 ntAPPRIS P3 TSL 3 BASIC19.52■□□□□ 0.72
Scn11aQ9R053 Ighv1-15-201ENSMUST00000192077 351 ntAPPRIS P1 BASIC19.52■□□□□ 0.72
Scn11aQ9R053 Rbfox2-207ENSMUST00000227533 1041 ntBASIC19.52■□□□□ 0.72
Scn11aQ9R053 Fahd2a-201ENSMUST00000028848 1211 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
Scn11aQ9R053 Apof-201ENSMUST00000050901 1258 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
Scn11aQ9R053 Hist2h3b-201ENSMUST00000098843 488 ntAPPRIS P1 BASIC19.52■□□□□ 0.72
Scn11aQ9R053 Mterf1a-202ENSMUST00000117463 2413 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
Scn11aQ9R053 Gm14317-201ENSMUST00000151754 1464 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
Scn11aQ9R053 Atxn7l2-204ENSMUST00000119650 2274 ntTSL 5 BASIC19.52■□□□□ 0.72
Scn11aQ9R053 2810459M11Rik-202ENSMUST00000165824 3331 ntAPPRIS P3 TSL 1 (best) BASIC19.52■□□□□ 0.72
Scn11aQ9R053 Ppm1b-202ENSMUST00000112304 3262 ntAPPRIS P3 TSL 1 (best) BASIC19.52■□□□□ 0.72
Scn11aQ9R053 Pan3-201ENSMUST00000031651 5048 ntAPPRIS P2 TSL 5 BASIC19.52■□□□□ 0.72
Scn11aQ9R053 Podnl1-201ENSMUST00000093380 2090 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
Scn11aQ9R053 Usf2-202ENSMUST00000108119 849 ntTSL 5 BASIC19.52■□□□□ 0.71
Scn11aQ9R053 Abhd18-206ENSMUST00000203650 797 ntTSL 5 BASIC19.52■□□□□ 0.71
Scn11aQ9R053 Gm26646-202ENSMUST00000205705 439 ntTSL 5 BASIC19.52■□□□□ 0.71
Scn11aQ9R053 Urah-207ENSMUST00000211372 688 ntAPPRIS P3 TSL 2 BASIC19.52■□□□□ 0.71
Scn11aQ9R053 Urah-201ENSMUST00000026554 890 ntAPPRIS P3 TSL 1 (best) BASIC19.52■□□□□ 0.71
Scn11aQ9R053 Bhlha9-201ENSMUST00000056184 1207 ntAPPRIS P1 BASIC19.52■□□□□ 0.71
Scn11aQ9R053 Abtb1-201ENSMUST00000032169 1845 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
Scn11aQ9R053 Casq1-201ENSMUST00000003554 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
Scn11aQ9R053 Onecut3-201ENSMUST00000051773 4776 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
Scn11aQ9R053 Nsmf-205ENSMUST00000114386 2685 ntTSL 5 BASIC19.52■□□□□ 0.71
Scn11aQ9R053 Gm45277-201ENSMUST00000210549 1695 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
Scn11aQ9R053 1700066B19Rik-201ENSMUST00000097617 2504 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Scn11aQ9R053 Fam72a-201ENSMUST00000068613 2191 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Scn11aQ9R053 Puf60-201ENSMUST00000002599 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC19.51■□□□□ 0.71
Scn11aQ9R053 Nrxn1-217ENSMUST00000174337 3021 ntTSL 5 BASIC19.51■□□□□ 0.71
Scn11aQ9R053 Get4-202ENSMUST00000110878 1180 ntAPPRIS ALT2 TSL 1 (best) BASIC19.51■□□□□ 0.71
Scn11aQ9R053 Qdpr-204ENSMUST00000120867 1234 ntTSL 5 BASIC19.51■□□□□ 0.71
Scn11aQ9R053 Sumo3-204ENSMUST00000129492 487 ntAPPRIS ALT2 TSL 2 BASIC19.51■□□□□ 0.71
Scn11aQ9R053 Egfl8-201ENSMUST00000015611 1150 ntAPPRIS P2 TSL 1 (best) BASIC19.51■□□□□ 0.71
Scn11aQ9R053 Smarca5-ps-202ENSMUST00000171805 1284 ntBASIC19.51■□□□□ 0.71
Scn11aQ9R053 Gm5091-201ENSMUST00000181658 1179 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
Scn11aQ9R053 Gm28411-202ENSMUST00000191318 464 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
Scn11aQ9R053 Hist1h2bg-201ENSMUST00000079251 618 ntAPPRIS P1 BASIC19.51■□□□□ 0.71
Scn11aQ9R053 Sumo1-201ENSMUST00000091374 1215 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Scn11aQ9R053 Hist1h2bn-201ENSMUST00000091709 381 ntAPPRIS P1 BASIC19.51■□□□□ 0.71
Scn11aQ9R053 Egfl8-202ENSMUST00000097345 1064 ntAPPRIS ALT2 TSL 1 (best) BASIC19.51■□□□□ 0.71
Scn11aQ9R053 Serinc2-203ENSMUST00000122374 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC19.51■□□□□ 0.71
Scn11aQ9R053 Enoph1-201ENSMUST00000031268 1420 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Scn11aQ9R053 Sh3yl1-201ENSMUST00000020997 1750 ntAPPRIS P3 TSL 1 (best) BASIC19.5■□□□□ 0.71
Scn11aQ9R053 Gm14822-201ENSMUST00000122247 291 ntBASIC19.5■□□□□ 0.71
Scn11aQ9R053 Gm11767-201ENSMUST00000129379 493 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
Scn11aQ9R053 Gm26695-201ENSMUST00000180920 1251 ntTSL 5 BASIC19.5■□□□□ 0.71
Scn11aQ9R053 Gm26768-201ENSMUST00000181097 966 ntTSL 5 BASIC19.5■□□□□ 0.71
Scn11aQ9R053 Mrpl17-201ENSMUST00000033170 1028 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
Scn11aQ9R053 A930016O22Rik-201ENSMUST00000047020 1214 ntTSL 2 BASIC19.5■□□□□ 0.71
Scn11aQ9R053 Pik3ip1-202ENSMUST00000093399 1098 ntAPPRIS ALT2 TSL 1 (best) BASIC19.5■□□□□ 0.71
Scn11aQ9R053 Gm11127-201ENSMUST00000113742 1344 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Scn11aQ9R053 4930528D03Rik-201ENSMUST00000181528 1339 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
Scn11aQ9R053 Tmem164-206ENSMUST00000112896 5224 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Scn11aQ9R053 Dcdc2c-206ENSMUST00000221349 2209 ntAPPRIS P1 TSL 5 BASIC19.5■□□□□ 0.71
Scn11aQ9R053 Hs3st1-201ENSMUST00000053116 1684 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Scn11aQ9R053 Krt23-201ENSMUST00000006969 1565 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Scn11aQ9R053 Nisch-201ENSMUST00000022469 5559 ntAPPRIS P3 TSL 2 BASIC19.5■□□□□ 0.71
Scn11aQ9R053 1700012D14Rik-201ENSMUST00000209597 605 ntTSL 3 BASIC19.49■□□□□ 0.71
Scn11aQ9R053 CT943659.1-201ENSMUST00000215459 326 ntBASIC19.49■□□□□ 0.71
Scn11aQ9R053 Tsfm-201ENSMUST00000040560 1206 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Scn11aQ9R053 Gpank1-201ENSMUST00000052167 1295 ntAPPRIS P3 TSL 1 (best) BASIC19.49■□□□□ 0.71
Retrieved 100 of 76,532 protein–RNA pairs in 38.8 ms