Protein–RNA interactions for Protein: Q9EPU0

Upf1, Regulator of nonsense transcripts 1, mousemouse

Known RBP Predictions only

Length 1,124 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf1Q9EPU0 Trim33-202ENSMUST00000106860 5025 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
Upf1Q9EPU0 Fzr1-205ENSMUST00000140901 3057 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
Upf1Q9EPU0 Gfra2-202ENSMUST00000227633 1480 ntBASIC18.77■□□□□ 0.59
Upf1Q9EPU0 Hsf1-205ENSMUST00000227478 2084 ntAPPRIS P1 BASIC18.77■□□□□ 0.59
Upf1Q9EPU0 Sqor-201ENSMUST00000005953 1804 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
Upf1Q9EPU0 Slc38a10-203ENSMUST00000076697 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
Upf1Q9EPU0 Krt77-201ENSMUST00000087996 2930 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Upf1Q9EPU0 Thoc3-201ENSMUST00000026990 2335 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Upf1Q9EPU0 Mmab-203ENSMUST00000123256 1277 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
Upf1Q9EPU0 Gm11773-201ENSMUST00000138256 497 ntTSL 2 BASIC18.76■□□□□ 0.59
Upf1Q9EPU0 Tma7-203ENSMUST00000192801 386 ntTSL 3 BASIC18.76■□□□□ 0.59
Upf1Q9EPU0 Gm10253-201ENSMUST00000194270 940 ntBASIC18.76■□□□□ 0.59
Upf1Q9EPU0 AC121788.1-202ENSMUST00000218801 871 ntTSL 5 BASIC18.76■□□□□ 0.59
Upf1Q9EPU0 Dcps-201ENSMUST00000034539 1274 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Upf1Q9EPU0 Hs3st5-202ENSMUST00000167191 2408 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Upf1Q9EPU0 Nodal-201ENSMUST00000049339 2095 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Upf1Q9EPU0 Cers1-203ENSMUST00000165819 2728 ntAPPRIS P4 TSL 1 (best) BASIC18.76■□□□□ 0.59
Upf1Q9EPU0 Zdhhc6-207ENSMUST00000224897 2168 ntAPPRIS P1 BASIC18.75■□□□□ 0.59
Upf1Q9EPU0 Cd83-201ENSMUST00000015540 2477 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Upf1Q9EPU0 Slc29a1-222ENSMUST00000171847 2033 ntAPPRIS P3 TSL 1 (best) BASIC18.75■□□□□ 0.59
Upf1Q9EPU0 Gm7336-201ENSMUST00000107041 1232 ntBASIC18.75■□□□□ 0.59
Upf1Q9EPU0 Ccdc169-203ENSMUST00000118963 740 ntTSL 3 BASIC18.75■□□□□ 0.59
Upf1Q9EPU0 Abhd11os-201ENSMUST00000136022 604 ntTSL 2 BASIC18.75■□□□□ 0.59
Upf1Q9EPU0 Gm15494-202ENSMUST00000171665 451 ntTSL 2 BASIC18.75■□□□□ 0.59
Upf1Q9EPU0 2810047C21Rik1-201ENSMUST00000172930 915 ntBASIC18.75■□□□□ 0.59
Upf1Q9EPU0 Gm20444-201ENSMUST00000174014 648 ntTSL 3 BASIC18.75■□□□□ 0.59
Upf1Q9EPU0 Trp53tg5-201ENSMUST00000017864 934 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Upf1Q9EPU0 Gm43661-201ENSMUST00000199099 687 ntTSL 3 BASIC18.75■□□□□ 0.59
Upf1Q9EPU0 Mlnr-ps-201ENSMUST00000208959 969 ntBASIC18.75■□□□□ 0.59
Upf1Q9EPU0 Gm18622-201ENSMUST00000219361 595 ntBASIC18.75■□□□□ 0.59
Upf1Q9EPU0 Calcb-201ENSMUST00000032902 962 ntAPPRIS P2 TSL 1 (best) BASIC18.75■□□□□ 0.59
Upf1Q9EPU0 Ccdc169-202ENSMUST00000061099 887 ntAPPRIS P1 TSL 5 BASIC18.75■□□□□ 0.59
Upf1Q9EPU0 Pdss2-201ENSMUST00000095725 2127 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Upf1Q9EPU0 Donson-203ENSMUST00000117159 2215 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
Upf1Q9EPU0 Mael-202ENSMUST00000194057 1691 ntTSL 5 BASIC18.75■□□□□ 0.59
Upf1Q9EPU0 Meg3-201ENSMUST00000124106 1988 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
Upf1Q9EPU0 Lpcat3-201ENSMUST00000004381 2281 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Upf1Q9EPU0 Zscan12-201ENSMUST00000053293 2270 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Upf1Q9EPU0 Tmem55b-205ENSMUST00000160835 2755 ntAPPRIS P3 TSL 1 (best) BASIC18.75■□□□□ 0.59
Upf1Q9EPU0 Dusp13-201ENSMUST00000075040 1745 ntAPPRIS P2 TSL 1 (best) BASIC18.74■□□□□ 0.59
Upf1Q9EPU0 Btnl9-202ENSMUST00000066531 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
Upf1Q9EPU0 Bmpr1a-201ENSMUST00000049005 5956 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Upf1Q9EPU0 Mrpl39-201ENSMUST00000116584 2294 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Upf1Q9EPU0 Lrriq4-203ENSMUST00000172350 1797 ntAPPRIS P3 TSL 5 BASIC18.74■□□□□ 0.59
Upf1Q9EPU0 Zpbp2-203ENSMUST00000107509 1577 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
Upf1Q9EPU0 Gpr84-201ENSMUST00000079824 1550 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Upf1Q9EPU0 Gm32369-201ENSMUST00000222630 1467 ntTSL 5 BASIC18.74■□□□□ 0.59
Upf1Q9EPU0 Mrpl40-202ENSMUST00000119273 778 ntTSL 3 BASIC18.74■□□□□ 0.59
Upf1Q9EPU0 Gm12490-201ENSMUST00000120255 560 ntBASIC18.74■□□□□ 0.59
Upf1Q9EPU0 Hoxa7-202ENSMUST00000134367 807 ntTSL 5 BASIC18.74■□□□□ 0.59
Upf1Q9EPU0 Mrps24-205ENSMUST00000154330 995 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Upf1Q9EPU0 Mir8102-201ENSMUST00000184148 139 ntBASIC18.74■□□□□ 0.59
Upf1Q9EPU0 Mir6420-201ENSMUST00000185032 102 ntBASIC18.74■□□□□ 0.59
Upf1Q9EPU0 D030044L04Rik-201ENSMUST00000204220 1291 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
Upf1Q9EPU0 Reep6-201ENSMUST00000040081 850 ntTSL 5 BASIC18.74■□□□□ 0.59
Upf1Q9EPU0 Skor2-201ENSMUST00000166956 3141 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Upf1Q9EPU0 Trib3-201ENSMUST00000040312 2026 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Upf1Q9EPU0 Layn-204ENSMUST00000217212 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
Upf1Q9EPU0 Mthfd2-201ENSMUST00000005810 2085 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Upf1Q9EPU0 Wnt10b-203ENSMUST00000226610 2217 ntAPPRIS P1 BASIC18.73■□□□□ 0.59
Upf1Q9EPU0 Zbtb7a-201ENSMUST00000048128 5938 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Upf1Q9EPU0 Notumos-201ENSMUST00000151998 2659 ntBASIC18.73■□□□□ 0.59
Upf1Q9EPU0 Mettl27-203ENSMUST00000111218 1387 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Upf1Q9EPU0 Gm22065-201ENSMUST00000103753 110 ntBASIC18.73■□□□□ 0.59
Upf1Q9EPU0 Gm22066-201ENSMUST00000103761 110 ntBASIC18.73■□□□□ 0.59
Upf1Q9EPU0 Gm24932-201ENSMUST00000103763 110 ntBASIC18.73■□□□□ 0.59
Upf1Q9EPU0 Gm24115-201ENSMUST00000103799 110 ntBASIC18.73■□□□□ 0.59
Upf1Q9EPU0 Gm22190-201ENSMUST00000103827 110 ntBASIC18.73■□□□□ 0.59
Upf1Q9EPU0 Gm22191-201ENSMUST00000103831 110 ntBASIC18.73■□□□□ 0.59
Upf1Q9EPU0 Gm24721-201ENSMUST00000103849 110 ntBASIC18.73■□□□□ 0.59
Upf1Q9EPU0 Gm28018-201ENSMUST00000103869 110 ntBASIC18.73■□□□□ 0.59
Upf1Q9EPU0 Gm26399-201ENSMUST00000103937 110 ntBASIC18.73■□□□□ 0.59
Upf1Q9EPU0 Gm6912-201ENSMUST00000117218 544 ntBASIC18.73■□□□□ 0.59
Upf1Q9EPU0 Cyba-201ENSMUST00000017604 744 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Upf1Q9EPU0 Gm25349-201ENSMUST00000177728 110 ntBASIC18.73■□□□□ 0.59
Upf1Q9EPU0 Gm23616-201ENSMUST00000177797 110 ntBASIC18.73■□□□□ 0.59
Upf1Q9EPU0 Gm25871-201ENSMUST00000177816 110 ntBASIC18.73■□□□□ 0.59
Upf1Q9EPU0 Gm24752-201ENSMUST00000178240 110 ntBASIC18.73■□□□□ 0.59
Upf1Q9EPU0 Gm24496-201ENSMUST00000178287 110 ntBASIC18.73■□□□□ 0.59
Upf1Q9EPU0 Gm25649-201ENSMUST00000178476 110 ntBASIC18.73■□□□□ 0.59
Upf1Q9EPU0 Gm25548-201ENSMUST00000178681 110 ntBASIC18.73■□□□□ 0.59
Upf1Q9EPU0 Gm23147-201ENSMUST00000178841 110 ntBASIC18.73■□□□□ 0.59
Upf1Q9EPU0 Gm26095-201ENSMUST00000179270 110 ntBASIC18.73■□□□□ 0.59
Upf1Q9EPU0 Gm22171-201ENSMUST00000179283 110 ntBASIC18.73■□□□□ 0.59
Upf1Q9EPU0 Gm23936-201ENSMUST00000179354 110 ntBASIC18.73■□□□□ 0.59
Upf1Q9EPU0 Gm22619-201ENSMUST00000179516 110 ntBASIC18.73■□□□□ 0.59
Upf1Q9EPU0 Gm25255-201ENSMUST00000179579 110 ntBASIC18.73■□□□□ 0.59
Upf1Q9EPU0 Gm24755-201ENSMUST00000179691 110 ntBASIC18.73■□□□□ 0.59
Upf1Q9EPU0 Gm26506-201ENSMUST00000179692 110 ntBASIC18.73■□□□□ 0.59
Upf1Q9EPU0 Gm25086-201ENSMUST00000179931 110 ntBASIC18.73■□□□□ 0.59
Upf1Q9EPU0 Gm23243-201ENSMUST00000180047 110 ntBASIC18.73■□□□□ 0.59
Upf1Q9EPU0 Gm24659-201ENSMUST00000180212 110 ntBASIC18.73■□□□□ 0.59
Upf1Q9EPU0 Gm24169-201ENSMUST00000180244 110 ntBASIC18.73■□□□□ 0.59
Upf1Q9EPU0 Gm23689-201ENSMUST00000180354 110 ntBASIC18.73■□□□□ 0.59
Upf1Q9EPU0 5430416N02Rik-202ENSMUST00000181873 626 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
Upf1Q9EPU0 Gm27306-201ENSMUST00000183970 107 ntBASIC18.73■□□□□ 0.59
Upf1Q9EPU0 Gm27359-201ENSMUST00000184153 110 ntBASIC18.73■□□□□ 0.59
Upf1Q9EPU0 Rps2-ps5-201ENSMUST00000184266 849 ntBASIC18.73■□□□□ 0.59
Upf1Q9EPU0 Gm27785-201ENSMUST00000184268 110 ntBASIC18.73■□□□□ 0.59
Upf1Q9EPU0 Gm27466-201ENSMUST00000184396 110 ntBASIC18.73■□□□□ 0.59
Retrieved 100 of 76,532 protein–RNA pairs in 22 ms