Protein–RNA interactions for Protein: Q9D1C8

Vps28, Vacuolar protein sorting-associated protein 28 homolog, mousemouse

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps28Q9D1C8 Ndufb11-201ENSMUST00000116621 908 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Vps28Q9D1C8 Cul4a-202ENSMUST00000121426 1044 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
Vps28Q9D1C8 Gm6623-201ENSMUST00000173570 544 ntBASIC16.97■□□□□ 0.31
Vps28Q9D1C8 Has3-202ENSMUST00000175987 1154 ntTSL 5 BASIC16.97■□□□□ 0.31
Vps28Q9D1C8 Gm17808-201ENSMUST00000200859 894 ntBASIC16.97■□□□□ 0.31
Vps28Q9D1C8 Nudt21-204ENSMUST00000212981 1184 ntTSL 3 BASIC16.97■□□□□ 0.31
Vps28Q9D1C8 Gm18115-201ENSMUST00000221209 621 ntBASIC16.97■□□□□ 0.31
Vps28Q9D1C8 Fam213b-201ENSMUST00000030935 883 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Vps28Q9D1C8 Taar2-201ENSMUST00000079134 1020 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Vps28Q9D1C8 Znhit1-202ENSMUST00000085941 740 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Vps28Q9D1C8 Bean1-204ENSMUST00000171018 3386 ntAPPRIS P4 TSL 1 (best) BASIC16.97■□□□□ 0.31
Vps28Q9D1C8 Simc1-201ENSMUST00000118072 2116 ntAPPRIS ALT2 TSL 5 BASIC16.97■□□□□ 0.31
Vps28Q9D1C8 Arhgef9-216ENSMUST00000197206 2227 ntTSL 5 BASIC16.97■□□□□ 0.31
Vps28Q9D1C8 Dvl3-204ENSMUST00000171774 2319 ntTSL 5 BASIC16.97■□□□□ 0.31
Vps28Q9D1C8 Tmem254b-201ENSMUST00000022418 1447 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
Vps28Q9D1C8 Tbcb-201ENSMUST00000006254 1416 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
Vps28Q9D1C8 Tasp1-201ENSMUST00000046656 2480 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
Vps28Q9D1C8 Helt-201ENSMUST00000058636 1541 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
Vps28Q9D1C8 Lonrf1-201ENSMUST00000065297 3930 ntAPPRIS P1 TSL 5 BASIC16.96■□□□□ 0.31
Vps28Q9D1C8 Kcnk4-201ENSMUST00000025908 1715 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
Vps28Q9D1C8 Phtf1-201ENSMUST00000055425 3060 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
Vps28Q9D1C8 Bean1-201ENSMUST00000093245 3199 ntAPPRIS ALT2 TSL 1 (best) BASIC16.96■□□□□ 0.31
Vps28Q9D1C8 Slc27a1-207ENSMUST00000212889 2730 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
Vps28Q9D1C8 Mir770-201ENSMUST00000103252 94 ntBASIC16.96■□□□□ 0.31
Vps28Q9D1C8 Shc3-203ENSMUST00000223543 1241 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
Vps28Q9D1C8 Nthl1-201ENSMUST00000047611 1080 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
Vps28Q9D1C8 Gfra4-202ENSMUST00000066958 783 ntAPPRIS ALT2 TSL 1 (best) BASIC16.96■□□□□ 0.31
Vps28Q9D1C8 Ddhd1-201ENSMUST00000051310 5012 ntAPPRIS P3 TSL 1 (best) BASIC16.96■□□□□ 0.31
Vps28Q9D1C8 Nat8l-201ENSMUST00000056355 6529 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
Vps28Q9D1C8 Pex6-201ENSMUST00000002840 3200 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
Vps28Q9D1C8 Gbe1-201ENSMUST00000023393 2846 ntAPPRIS ALT2 TSL 5 BASIC16.96■□□□□ 0.3
Vps28Q9D1C8 Mag-203ENSMUST00000187137 2434 ntAPPRIS P2 TSL 1 (best) BASIC16.96■□□□□ 0.3
Vps28Q9D1C8 Arfip1-202ENSMUST00000107687 1714 ntTSL 5 BASIC16.96■□□□□ 0.3
Vps28Q9D1C8 Crhbp-201ENSMUST00000045583 1701 ntTSL 1 (best) BASIC16.96■□□□□ 0.3
Vps28Q9D1C8 Snrpd2-201ENSMUST00000049294 1420 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
Vps28Q9D1C8 Rasa2-201ENSMUST00000034984 5813 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Vps28Q9D1C8 Amfr-201ENSMUST00000053766 3880 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Vps28Q9D1C8 Dmap1-201ENSMUST00000102687 1566 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Vps28Q9D1C8 C130026I21Rik-201ENSMUST00000064341 1561 ntAPPRIS P3 TSL 1 (best) BASIC16.95■□□□□ 0.3
Vps28Q9D1C8 Gm14859-201ENSMUST00000117752 357 ntBASIC16.95■□□□□ 0.3
Vps28Q9D1C8 Pyy-201ENSMUST00000017455 555 ntAPPRIS P3 TSL 1 (best) BASIC16.95■□□□□ 0.3
Vps28Q9D1C8 Bvht-202ENSMUST00000183087 588 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
Vps28Q9D1C8 Rpl13a-204ENSMUST00000209711 495 ntTSL 3 BASIC16.95■□□□□ 0.3
Vps28Q9D1C8 Pgpep1-208ENSMUST00000211715 676 ntTSL 3 BASIC16.95■□□□□ 0.3
Vps28Q9D1C8 Mrpl36-203ENSMUST00000222030 680 ntAPPRIS P1 TSL 3 BASIC16.95■□□□□ 0.3
Vps28Q9D1C8 Foxp4-204ENSMUST00000113265 3999 ntAPPRIS ALT2 TSL 1 (best) BASIC16.95■□□□□ 0.3
Vps28Q9D1C8 Gpd1-203ENSMUST00000162194 1515 ntTSL 5 BASIC16.95■□□□□ 0.3
Vps28Q9D1C8 Nit1-202ENSMUST00000111295 1335 ntAPPRIS P3 TSL 1 (best) BASIC16.95■□□□□ 0.3
Vps28Q9D1C8 Prkar2a-201ENSMUST00000035220 4965 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Vps28Q9D1C8 Itsn1-203ENSMUST00000095909 6103 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
Vps28Q9D1C8 Iqcd-202ENSMUST00000094391 1673 ntAPPRIS P2 TSL 1 (best) BASIC16.94■□□□□ 0.3
Vps28Q9D1C8 Slc16a7-205ENSMUST00000210780 2562 ntAPPRIS P1 TSL 5 BASIC16.94■□□□□ 0.3
Vps28Q9D1C8 Nectin3-202ENSMUST00000023335 9116 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
Vps28Q9D1C8 Zfc3h1-201ENSMUST00000036044 6957 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Vps28Q9D1C8 Akap8l-201ENSMUST00000050214 2075 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Vps28Q9D1C8 Tekt5-202ENSMUST00000115831 1277 ntAPPRIS P3 TSL 1 (best) BASIC16.94■□□□□ 0.3
Vps28Q9D1C8 Gm11950-201ENSMUST00000121615 838 ntBASIC16.94■□□□□ 0.3
Vps28Q9D1C8 Srgn-205ENSMUST00000162161 694 ntAPPRIS P1 TSL 3 BASIC16.94■□□□□ 0.3
Vps28Q9D1C8 Imp3-201ENSMUST00000034827 924 ntAPPRIS P1 BASIC16.94■□□□□ 0.3
Vps28Q9D1C8 Tmem270-201ENSMUST00000047305 932 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
Vps28Q9D1C8 Exosc5-201ENSMUST00000079634 1020 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Vps28Q9D1C8 Enah-210ENSMUST00000193074 1971 ntAPPRIS ALT2 TSL 5 BASIC16.94■□□□□ 0.3
Vps28Q9D1C8 Nsmf-201ENSMUST00000006646 2922 ntAPPRIS P3 TSL 1 (best) BASIC16.94■□□□□ 0.3
Vps28Q9D1C8 Bcor-203ENSMUST00000115512 6887 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
Vps28Q9D1C8 Celf3-208ENSMUST00000198316 2505 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
Vps28Q9D1C8 Cldn7-201ENSMUST00000018713 1335 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Vps28Q9D1C8 Spats2l-212ENSMUST00000170139 2315 ntAPPRIS P1 TSL 5 BASIC16.93■□□□□ 0.3
Vps28Q9D1C8 Zfp446-202ENSMUST00000108535 2594 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
Vps28Q9D1C8 Trim67-202ENSMUST00000167588 8735 ntAPPRIS P1 TSL 5 BASIC16.93■□□□□ 0.3
Vps28Q9D1C8 Abcg5-202ENSMUST00000163375 1613 ntTSL 5 BASIC16.93■□□□□ 0.3
Vps28Q9D1C8 Dtwd2-203ENSMUST00000163590 2857 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
Vps28Q9D1C8 Elk4-202ENSMUST00000086556 4433 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Vps28Q9D1C8 Cops6-201ENSMUST00000019638 1787 ntAPPRIS P2 TSL 1 (best) BASIC16.93■□□□□ 0.3
Vps28Q9D1C8 Smad3-201ENSMUST00000034973 5090 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Vps28Q9D1C8 Gm13216-201ENSMUST00000117145 591 ntBASIC16.93■□□□□ 0.3
Vps28Q9D1C8 Mir142hg-201ENSMUST00000123700 269 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
Vps28Q9D1C8 Gm7284-201ENSMUST00000131667 944 ntBASIC16.93■□□□□ 0.3
Vps28Q9D1C8 4933412L11Rik-201ENSMUST00000203702 1044 ntBASIC16.93■□□□□ 0.3
Vps28Q9D1C8 Angptl8-201ENSMUST00000058777 865 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Vps28Q9D1C8 Sfrp1-201ENSMUST00000033952 4372 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Vps28Q9D1C8 Kdm5b-203ENSMUST00000112198 5413 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
Vps28Q9D1C8 Lrrc45-201ENSMUST00000026139 2492 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Vps28Q9D1C8 Rnf38-203ENSMUST00000102934 5240 ntAPPRIS P1 TSL 5 BASIC16.93■□□□□ 0.3
Vps28Q9D1C8 Zic1-201ENSMUST00000034927 5606 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Vps28Q9D1C8 Adgrl1-205ENSMUST00000132500 5719 ntTSL 5 BASIC16.93■□□□□ 0.3
Vps28Q9D1C8 Tenm3-204ENSMUST00000110346 2267 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
Vps28Q9D1C8 4833418N02Rik-202ENSMUST00000146560 1495 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
Vps28Q9D1C8 Cryl1-201ENSMUST00000022517 1497 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Vps28Q9D1C8 Zfp655-206ENSMUST00000200039 1765 ntAPPRIS ALT1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Vps28Q9D1C8 Btbd11-203ENSMUST00000105307 5788 ntAPPRIS P3 TSL 1 (best) BASIC16.92■□□□□ 0.3
Vps28Q9D1C8 Cnksr1-201ENSMUST00000030645 2468 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Vps28Q9D1C8 Pdgfa-202ENSMUST00000076095 2060 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Vps28Q9D1C8 4933427J07Rik-201ENSMUST00000156275 1533 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
Vps28Q9D1C8 Tyk2-205ENSMUST00000214864 1662 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
Vps28Q9D1C8 Lrch4-201ENSMUST00000031734 3078 ntAPPRIS P3 TSL 1 (best) BASIC16.92■□□□□ 0.3
Vps28Q9D1C8 Gm11620-201ENSMUST00000118770 1845 ntBASIC16.92■□□□□ 0.3
Vps28Q9D1C8 Gm19935-201ENSMUST00000209208 979 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Vps28Q9D1C8 AC156576.2-201ENSMUST00000222752 503 ntTSL 5 BASIC16.92■□□□□ 0.3
Vps28Q9D1C8 Idh1-201ENSMUST00000097709 2302 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Vps28Q9D1C8 Fam126a-201ENSMUST00000030849 5659 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Retrieved 100 of 76,532 protein–RNA pairs in 34 ms