Protein–RNA interactions for Protein: Q8CFK2

Brf1, Transcription factor IIIB 90 kDa subunit, mousemouse

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Brf1Q8CFK2 Shox2-202ENSMUST00000162060 1537 ntTSL 3 BASIC19.98■□□□□ 0.79
Brf1Q8CFK2 Nuak1-201ENSMUST00000020220 5558 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Brf1Q8CFK2 Cct8-201ENSMUST00000026704 2394 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Brf1Q8CFK2 Ctcf-201ENSMUST00000005841 3782 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Brf1Q8CFK2 H13-204ENSMUST00000125366 5204 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Brf1Q8CFK2 Lzts2-201ENSMUST00000039016 2825 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Brf1Q8CFK2 Fbxo6-208ENSMUST00000168503 1240 ntAPPRIS P1 TSL 2 BASIC19.98■□□□□ 0.79
Brf1Q8CFK2 Gm28402-201ENSMUST00000188574 373 ntTSL 3 BASIC19.98■□□□□ 0.79
Brf1Q8CFK2 Kiss1r-202ENSMUST00000219745 979 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
Brf1Q8CFK2 Mrpl14-201ENSMUST00000024734 645 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Brf1Q8CFK2 Pafah1b3-201ENSMUST00000005583 901 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Brf1Q8CFK2 Mgat1-201ENSMUST00000081794 2976 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Brf1Q8CFK2 Plekhf1-201ENSMUST00000098513 5263 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Brf1Q8CFK2 Adnp2-201ENSMUST00000066743 5012 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Brf1Q8CFK2 Atp5a1-201ENSMUST00000026495 2471 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Brf1Q8CFK2 Mef2d-203ENSMUST00000107559 1791 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
Brf1Q8CFK2 Mfsd4b3-201ENSMUST00000095749 1787 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Brf1Q8CFK2 Kcnq5-203ENSMUST00000115300 6975 ntAPPRIS ALT2 TSL 1 (best) BASIC19.98■□□□□ 0.79
Brf1Q8CFK2 Neil3-201ENSMUST00000047768 2253 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Brf1Q8CFK2 Rab6b-201ENSMUST00000035155 5007 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Brf1Q8CFK2 Mmp17-201ENSMUST00000031390 6422 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Brf1Q8CFK2 Marveld1-201ENSMUST00000061111 3066 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Brf1Q8CFK2 Lrp5-201ENSMUST00000025856 5161 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Brf1Q8CFK2 Elk4-202ENSMUST00000086556 4433 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Brf1Q8CFK2 Klhl40-201ENSMUST00000098272 2370 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Brf1Q8CFK2 Abi1-215ENSMUST00000178908 2239 ntAPPRIS ALT1 TSL 5 BASIC19.97■□□□□ 0.79
Brf1Q8CFK2 Asnsd1-202ENSMUST00000123519 983 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
Brf1Q8CFK2 Gm6659-201ENSMUST00000174752 547 ntBASIC19.97■□□□□ 0.79
Brf1Q8CFK2 Gm20033-201ENSMUST00000180470 572 ntTSL 3 BASIC19.97■□□□□ 0.79
Brf1Q8CFK2 Gm29707-201ENSMUST00000196325 491 ntBASIC19.97■□□□□ 0.79
Brf1Q8CFK2 Gm19935-201ENSMUST00000209208 979 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Brf1Q8CFK2 Gm10358-201ENSMUST00000212864 1250 ntAPPRIS P1 BASIC19.97■□□□□ 0.79
Brf1Q8CFK2 Mtnr1b-201ENSMUST00000057920 1095 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Brf1Q8CFK2 Cdkn2c-201ENSMUST00000063531 1106 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Brf1Q8CFK2 C530025M09Rik-201ENSMUST00000099264 690 ntAPPRIS P1 BASIC19.97■□□□□ 0.79
Brf1Q8CFK2 Slc35b2-202ENSMUST00000223987 1766 ntBASIC19.97■□□□□ 0.79
Brf1Q8CFK2 Dcaf5-201ENSMUST00000054145 5706 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Brf1Q8CFK2 Cxcl14-202ENSMUST00000224801 1467 ntBASIC19.97■□□□□ 0.79
Brf1Q8CFK2 Sox4-201ENSMUST00000067230 4795 ntAPPRIS P1 BASIC19.97■□□□□ 0.79
Brf1Q8CFK2 Rbpms-203ENSMUST00000053251 2466 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
Brf1Q8CFK2 D17Wsu92e-203ENSMUST00000114863 3828 ntAPPRIS P3 TSL 1 (best) BASIC19.97■□□□□ 0.79
Brf1Q8CFK2 Ormdl3-201ENSMUST00000052919 2184 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Brf1Q8CFK2 Rgs6-206ENSMUST00000186309 1693 ntAPPRIS P4 TSL 5 BASIC19.97■□□□□ 0.79
Brf1Q8CFK2 Rflna-201ENSMUST00000036109 1681 ntAPPRIS P1 TSL 5 BASIC19.97■□□□□ 0.79
Brf1Q8CFK2 Cgn-204ENSMUST00000155485 2361 ntTSL 2 BASIC19.97■□□□□ 0.79
Brf1Q8CFK2 Cdc27-202ENSMUST00000106961 1863 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
Brf1Q8CFK2 Iqsec2-202ENSMUST00000112604 5967 ntAPPRIS ALT2 TSL 1 (best) BASIC19.96■□□□□ 0.79
Brf1Q8CFK2 Ikzf1-203ENSMUST00000065433 4697 ntAPPRIS ALT2 TSL 5 BASIC19.96■□□□□ 0.79
Brf1Q8CFK2 Pbx4-201ENSMUST00000081503 1560 ntAPPRIS P1 TSL 5 BASIC19.96■□□□□ 0.79
Brf1Q8CFK2 Gm11860-201ENSMUST00000122346 1010 ntBASIC19.96■□□□□ 0.79
Brf1Q8CFK2 Gm13524-201ENSMUST00000125869 662 ntTSL 3 BASIC19.96■□□□□ 0.79
Brf1Q8CFK2 Nt5c1a-201ENSMUST00000068262 1220 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Brf1Q8CFK2 Gabra5-202ENSMUST00000206382 2607 ntAPPRIS P1 TSL 5 BASIC19.96■□□□□ 0.79
Brf1Q8CFK2 Mta1-201ENSMUST00000009099 2826 ntAPPRIS ALT2 TSL 5 BASIC19.96■□□□□ 0.79
Brf1Q8CFK2 Dbnl-202ENSMUST00000102928 2295 ntAPPRIS P3 TSL 1 (best) BASIC19.96■□□□□ 0.79
Brf1Q8CFK2 Lhfp-203ENSMUST00000147139 1932 ntAPPRIS P1 TSL 5 BASIC19.96■□□□□ 0.79
Brf1Q8CFK2 Wasf1-202ENSMUST00000105509 2719 ntAPPRIS P1 TSL 5 BASIC19.96■□□□□ 0.79
Brf1Q8CFK2 Atp6v1b1-206ENSMUST00000206911 1591 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
Brf1Q8CFK2 Rsph6a-202ENSMUST00000076887 1580 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
Brf1Q8CFK2 Ankra2-204ENSMUST00000150352 2217 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
Brf1Q8CFK2 Ruvbl2-201ENSMUST00000107771 1834 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Brf1Q8CFK2 Tgfb1i1-205ENSMUST00000165667 1812 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
Brf1Q8CFK2 Cryl1-201ENSMUST00000022517 1497 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Brf1Q8CFK2 Rhno1-202ENSMUST00000112151 1108 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Brf1Q8CFK2 Gm23634-201ENSMUST00000175071 91 ntBASIC19.95■□□□□ 0.78
Brf1Q8CFK2 Gm38282-201ENSMUST00000192751 695 ntTSL 5 BASIC19.95■□□□□ 0.78
Brf1Q8CFK2 Nudt21-204ENSMUST00000212981 1184 ntTSL 3 BASIC19.95■□□□□ 0.78
Brf1Q8CFK2 AL731706.1-201ENSMUST00000227806 944 ntAPPRIS ALT2 BASIC19.95■□□□□ 0.78
Brf1Q8CFK2 Gpr20-201ENSMUST00000064166 2144 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Brf1Q8CFK2 Tjp1-202ENSMUST00000102592 7049 ntAPPRIS P3 TSL 1 (best) BASIC19.95■□□□□ 0.78
Brf1Q8CFK2 Gm16867-201ENSMUST00000179116 3084 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Brf1Q8CFK2 Comp-201ENSMUST00000003659 2416 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Brf1Q8CFK2 Tmem267-205ENSMUST00000223912 1789 ntAPPRIS P1 BASIC19.95■□□□□ 0.78
Brf1Q8CFK2 Lrig3-201ENSMUST00000074807 4016 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Brf1Q8CFK2 Thegl-202ENSMUST00000117880 1641 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Brf1Q8CFK2 Gnas-222ENSMUST00000180362 1645 ntTSL 5 BASIC19.94■□□□□ 0.78
Brf1Q8CFK2 Ocel1-201ENSMUST00000002469 1611 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Brf1Q8CFK2 Rnf103-201ENSMUST00000064637 3264 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Brf1Q8CFK2 9530018F02Rik-201ENSMUST00000219513 2599 ntBASIC19.94■□□□□ 0.78
Brf1Q8CFK2 Abhd16a-201ENSMUST00000007251 1945 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Brf1Q8CFK2 Pyy-201ENSMUST00000017455 555 ntAPPRIS P3 TSL 1 (best) BASIC19.94■□□□□ 0.78
Brf1Q8CFK2 Hint2-201ENSMUST00000030192 610 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Brf1Q8CFK2 Wdr1-201ENSMUST00000005234 3089 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Brf1Q8CFK2 Zfp622-201ENSMUST00000061875 2802 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Brf1Q8CFK2 Ccdc184-201ENSMUST00000031914 2329 ntAPPRIS P1 BASIC19.94■□□□□ 0.78
Brf1Q8CFK2 Gnb3-201ENSMUST00000024206 1846 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Brf1Q8CFK2 Scrt1-202ENSMUST00000164703 3478 ntAPPRIS P1 TSL 2 BASIC19.94■□□□□ 0.78
Brf1Q8CFK2 Yipf2-202ENSMUST00000078572 1894 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Brf1Q8CFK2 Msi2-201ENSMUST00000092794 1855 ntAPPRIS P2 TSL 1 (best) BASIC19.94■□□□□ 0.78
Brf1Q8CFK2 Zmiz1-201ENSMUST00000007961 5397 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Brf1Q8CFK2 Tead3-201ENSMUST00000114799 2448 ntAPPRIS P2 TSL 1 (best) BASIC19.94■□□□□ 0.78
Brf1Q8CFK2 Ttc6-203ENSMUST00000172939 5782 ntAPPRIS P1 TSL 5 BASIC19.94■□□□□ 0.78
Brf1Q8CFK2 Gm15743-202ENSMUST00000182690 1901 ntBASIC19.94■□□□□ 0.78
Brf1Q8CFK2 Chrna2-202ENSMUST00000206455 1933 ntAPPRIS P1 TSL 5 BASIC19.94■□□□□ 0.78
Brf1Q8CFK2 Fam135a-201ENSMUST00000027337 5536 ntAPPRIS P2 TSL 5 BASIC19.94■□□□□ 0.78
Brf1Q8CFK2 Disp3-201ENSMUST00000047720 5282 ntAPPRIS P1 TSL 5 BASIC19.94■□□□□ 0.78
Brf1Q8CFK2 Fbxl21-201ENSMUST00000045428 1965 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Brf1Q8CFK2 Tm6sf2-202ENSMUST00000110160 1446 ntAPPRIS ALT1 TSL 1 (best) BASIC19.93■□□□□ 0.78
Brf1Q8CFK2 Bicc1-203ENSMUST00000143791 5431 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
Brf1Q8CFK2 Htr3a-201ENSMUST00000003826 2082 ntAPPRIS P2 TSL 1 (best) BASIC19.93■□□□□ 0.78
Retrieved 100 of 76,532 protein–RNA pairs in 25.9 ms