Protein–RNA interactions for Protein: Q8BWR4

Usp40, Ubiquitin carboxyl-terminal hydrolase 40, mousemouse

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp40Q8BWR4 Kat2b-ps-201ENSMUST00000128468 2490 ntBASIC22.65■■□□□ 1.22
Usp40Q8BWR4 Tekt1-202ENSMUST00000108502 1403 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
Usp40Q8BWR4 Rbpms-201ENSMUST00000033994 2375 ntTSL 1 (best) BASIC22.64■■□□□ 1.22
Usp40Q8BWR4 Ch25h-201ENSMUST00000050562 1350 ntAPPRIS P1 BASIC22.64■■□□□ 1.22
Usp40Q8BWR4 Txnl1-201ENSMUST00000025476 2558 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.22
Usp40Q8BWR4 Dtx2-201ENSMUST00000005072 2562 ntAPPRIS P3 TSL 1 (best) BASIC22.64■■□□□ 1.22
Usp40Q8BWR4 A4galt-201ENSMUST00000049530 2088 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.22
Usp40Q8BWR4 Gins4-201ENSMUST00000033950 1349 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.22
Usp40Q8BWR4 Stim2-204ENSMUST00000201469 4892 ntAPPRIS ALT2 TSL 5 BASIC22.64■■□□□ 1.22
Usp40Q8BWR4 Pgap2-203ENSMUST00000120119 1979 ntTSL 1 (best) BASIC22.64■■□□□ 1.21
Usp40Q8BWR4 Acp7-201ENSMUST00000040112 1978 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.21
Usp40Q8BWR4 Gm7506-201ENSMUST00000207758 815 ntBASIC22.64■■□□□ 1.21
Usp40Q8BWR4 Rpl18-204ENSMUST00000209693 535 ntTSL 5 BASIC22.64■■□□□ 1.21
Usp40Q8BWR4 Pdcd6-201ENSMUST00000022060 1131 ntAPPRIS P2 TSL 1 (best) BASIC22.64■■□□□ 1.21
Usp40Q8BWR4 Gpank1-201ENSMUST00000052167 1295 ntAPPRIS P3 TSL 1 (best) BASIC22.64■■□□□ 1.21
Usp40Q8BWR4 Rbbp7-203ENSMUST00000112327 1862 ntTSL 5 BASIC22.64■■□□□ 1.21
Usp40Q8BWR4 Atp2a2-201ENSMUST00000031423 4486 ntAPPRIS P4 TSL 1 (best) BASIC22.64■■□□□ 1.21
Usp40Q8BWR4 Amn1-201ENSMUST00000095319 1369 ntAPPRIS ALT2 TSL 1 (best) BASIC22.63■■□□□ 1.21
Usp40Q8BWR4 Ankra2-201ENSMUST00000022164 1755 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
Usp40Q8BWR4 Atp1b1-201ENSMUST00000027863 2580 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
Usp40Q8BWR4 2810039B14Rik-201ENSMUST00000183928 1459 ntTSL 1 (best) BASIC22.63■■□□□ 1.21
Usp40Q8BWR4 Ndufb6-202ENSMUST00000108108 480 ntTSL 3 BASIC22.63■■□□□ 1.21
Usp40Q8BWR4 Cabp2-205ENSMUST00000162908 911 ntAPPRIS P3 TSL 1 (best) BASIC22.63■■□□□ 1.21
Usp40Q8BWR4 Jpx-202ENSMUST00000182447 712 ntTSL 3 BASIC22.63■■□□□ 1.21
Usp40Q8BWR4 Rgp1-201ENSMUST00000030190 1292 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
Usp40Q8BWR4 Hnrnpul2-201ENSMUST00000096753 5726 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
Usp40Q8BWR4 Polr3e-203ENSMUST00000207481 2545 ntAPPRIS ALT2 TSL 1 (best) BASIC22.63■■□□□ 1.21
Usp40Q8BWR4 Gnao1-201ENSMUST00000034198 2948 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
Usp40Q8BWR4 Smpdl3b-201ENSMUST00000030709 2006 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
Usp40Q8BWR4 Lins1-203ENSMUST00000121777 2729 ntAPPRIS P3 TSL 2 BASIC22.62■■□□□ 1.21
Usp40Q8BWR4 Sh2b1-203ENSMUST00000205440 3089 ntAPPRIS ALT2 TSL 1 (best) BASIC22.62■■□□□ 1.21
Usp40Q8BWR4 Gm21887-202ENSMUST00000179760 483 ntAPPRIS ALT2 TSL 5 BASIC22.62■■□□□ 1.21
Usp40Q8BWR4 Gm2651-201ENSMUST00000203560 838 ntBASIC22.62■■□□□ 1.21
Usp40Q8BWR4 Lat-206ENSMUST00000206793 1215 ntAPPRIS ALT2 TSL 5 BASIC22.62■■□□□ 1.21
Usp40Q8BWR4 Fosb-206ENSMUST00000208446 1090 ntTSL 1 (best) BASIC22.62■■□□□ 1.21
Usp40Q8BWR4 Magohb-201ENSMUST00000032307 767 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
Usp40Q8BWR4 Dars-202ENSMUST00000064309 645 ntTSL 1 (best) BASIC22.62■■□□□ 1.21
Usp40Q8BWR4 Hhipl1-201ENSMUST00000021685 5174 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
Usp40Q8BWR4 Rcc1-201ENSMUST00000030726 2278 ntTSL 1 (best) BASIC22.62■■□□□ 1.21
Usp40Q8BWR4 Rps6ka2-201ENSMUST00000024575 5404 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
Usp40Q8BWR4 Gde1-201ENSMUST00000038791 1582 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
Usp40Q8BWR4 Wdr13-202ENSMUST00000115623 1749 ntAPPRIS P1 TSL 5 BASIC22.62■■□□□ 1.21
Usp40Q8BWR4 Pgc-201ENSMUST00000024782 1388 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
Usp40Q8BWR4 Shox2-202ENSMUST00000162060 1537 ntTSL 3 BASIC22.62■■□□□ 1.21
Usp40Q8BWR4 Ero1lb-203ENSMUST00000221560 1964 ntTSL 1 (best) BASIC22.61■■□□□ 1.21
Usp40Q8BWR4 Klhdc8b-210ENSMUST00000193895 2718 ntAPPRIS P1 TSL 5 BASIC22.61■■□□□ 1.21
Usp40Q8BWR4 Ccser1-203ENSMUST00000126214 5657 ntAPPRIS P1 TSL 5 BASIC22.61■■□□□ 1.21
Usp40Q8BWR4 Dok3-202ENSMUST00000223563 1644 ntAPPRIS P1 BASIC22.61■■□□□ 1.21
Usp40Q8BWR4 P2rx5-201ENSMUST00000006104 2395 ntAPPRIS P1 TSL 1 (best) BASIC22.61■■□□□ 1.21
Usp40Q8BWR4 Crybb1-202ENSMUST00000112375 793 ntAPPRIS P1 TSL 3 BASIC22.61■■□□□ 1.21
Usp40Q8BWR4 Gm15510-201ENSMUST00000123644 1172 ntTSL 1 (best) BASIC22.61■■□□□ 1.21
Usp40Q8BWR4 Tmem208-201ENSMUST00000015000 785 ntAPPRIS P1 TSL 1 (best) BASIC22.61■■□□□ 1.21
Usp40Q8BWR4 4930477E14Rik-201ENSMUST00000181412 621 ntTSL 1 (best) BASIC22.61■■□□□ 1.21
Usp40Q8BWR4 Gm44264-201ENSMUST00000203049 742 ntTSL 3 BASIC22.61■■□□□ 1.21
Usp40Q8BWR4 Syncrip-201ENSMUST00000069221 9450 ntAPPRIS P3 TSL 1 (best) BASIC22.61■■□□□ 1.21
Usp40Q8BWR4 Frmd5-203ENSMUST00000121219 2262 ntTSL 1 (best) BASIC22.61■■□□□ 1.21
Usp40Q8BWR4 Prss53-201ENSMUST00000121394 2134 ntAPPRIS P1 TSL 1 (best) BASIC22.61■■□□□ 1.21
Usp40Q8BWR4 Gpr161-202ENSMUST00000178700 1827 ntAPPRIS ALT2 TSL 1 (best) BASIC22.61■■□□□ 1.21
Usp40Q8BWR4 Tnrc18-201ENSMUST00000151477 6487 ntAPPRIS P1 TSL 1 (best) BASIC22.61■■□□□ 1.21
Usp40Q8BWR4 Nsmf-202ENSMUST00000074422 2824 ntTSL 1 (best) BASIC22.61■■□□□ 1.21
Usp40Q8BWR4 Nol4l-201ENSMUST00000035346 6399 ntAPPRIS P1 TSL 1 (best) BASIC22.61■■□□□ 1.21
Usp40Q8BWR4 Nap1l1-201ENSMUST00000065917 1486 ntAPPRIS P1 TSL 1 (best) BASIC22.6■■□□□ 1.21
Usp40Q8BWR4 Kmt5b-203ENSMUST00000113968 3216 ntAPPRIS ALT2 TSL 1 (best) BASIC22.6■■□□□ 1.21
Usp40Q8BWR4 Actg1-202ENSMUST00000071555 1952 ntAPPRIS P1 TSL 1 (best) BASIC22.6■■□□□ 1.21
Usp40Q8BWR4 1700019N19Rik-201ENSMUST00000028299 970 ntAPPRIS P2 TSL 1 (best) BASIC22.6■■□□□ 1.21
Usp40Q8BWR4 Polr2f-201ENSMUST00000040077 543 ntAPPRIS P1 TSL 1 (best) BASIC22.6■■□□□ 1.21
Usp40Q8BWR4 A330070K13Rik-201ENSMUST00000063656 633 ntAPPRIS P1 TSL 1 (best) BASIC22.6■■□□□ 1.21
Usp40Q8BWR4 Col4a3bp-201ENSMUST00000077672 2746 ntAPPRIS P1 TSL 1 (best) BASIC22.6■■□□□ 1.21
Usp40Q8BWR4 Pus1-204ENSMUST00000112426 1389 ntTSL 1 (best) BASIC22.6■■□□□ 1.21
Usp40Q8BWR4 Snupn-201ENSMUST00000068856 1391 ntAPPRIS P1 TSL 1 (best) BASIC22.6■■□□□ 1.21
Usp40Q8BWR4 Bean1-201ENSMUST00000093245 3199 ntAPPRIS ALT2 TSL 1 (best) BASIC22.6■■□□□ 1.21
Usp40Q8BWR4 Gm26676-201ENSMUST00000181877 2226 ntTSL 1 (best) BASIC22.59■■□□□ 1.21
Usp40Q8BWR4 Gm43338-201ENSMUST00000198617 2223 ntBASIC22.59■■□□□ 1.21
Usp40Q8BWR4 Ahr-202ENSMUST00000116436 5548 ntAPPRIS P1 TSL 1 (best) BASIC22.59■■□□□ 1.21
Usp40Q8BWR4 Ube2e1-201ENSMUST00000022296 1408 ntAPPRIS P1 TSL 1 (best) BASIC22.59■■□□□ 1.21
Usp40Q8BWR4 Pitpnm1-201ENSMUST00000049658 4206 ntAPPRIS P1 TSL 1 (best) BASIC22.59■■□□□ 1.21
Usp40Q8BWR4 Ttyh3-202ENSMUST00000197452 4576 ntTSL 1 (best) BASIC22.59■■□□□ 1.21
Usp40Q8BWR4 Sdhb-201ENSMUST00000010007 1142 ntAPPRIS P1 TSL 1 (best) BASIC22.59■■□□□ 1.21
Usp40Q8BWR4 Gm8349-201ENSMUST00000182720 1003 ntBASIC22.59■■□□□ 1.21
Usp40Q8BWR4 Gm45669-201ENSMUST00000209808 459 ntTSL 1 (best) BASIC22.59■■□□□ 1.21
Usp40Q8BWR4 Dcps-201ENSMUST00000034539 1274 ntAPPRIS P1 TSL 1 (best) BASIC22.59■■□□□ 1.21
Usp40Q8BWR4 Isg15-201ENSMUST00000085425 756 ntAPPRIS P1 TSL 1 (best) BASIC22.59■■□□□ 1.21
Usp40Q8BWR4 Pacsin3-202ENSMUST00000059566 1867 ntAPPRIS P1 TSL 1 (best) BASIC22.59■■□□□ 1.21
Usp40Q8BWR4 Aspscr1-204ENSMUST00000106159 1615 ntTSL 5 BASIC22.59■■□□□ 1.21
Usp40Q8BWR4 Gm18856-201ENSMUST00000178096 1374 ntBASIC22.59■■□□□ 1.21
Usp40Q8BWR4 Ulk2-201ENSMUST00000004920 5743 ntAPPRIS P1 TSL 1 (best) BASIC22.59■■□□□ 1.21
Usp40Q8BWR4 Yars2-204ENSMUST00000159962 2805 ntTSL 2 BASIC22.58■■□□□ 1.21
Usp40Q8BWR4 Atxn7-203ENSMUST00000223880 2946 ntAPPRIS P2 BASIC22.58■■□□□ 1.21
Usp40Q8BWR4 Itgb7-201ENSMUST00000001327 2674 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.21
Usp40Q8BWR4 Bmi1-201ENSMUST00000028071 3594 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.21
Usp40Q8BWR4 Gm9821-201ENSMUST00000178895 1953 ntAPPRIS P1 BASIC22.58■■□□□ 1.21
Usp40Q8BWR4 Dnaja3-202ENSMUST00000115854 2505 ntAPPRIS ALT1 TSL 1 (best) BASIC22.58■■□□□ 1.21
Usp40Q8BWR4 Zufsp-202ENSMUST00000218055 2180 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.21
Usp40Q8BWR4 Gm28411-202ENSMUST00000191318 464 ntTSL 1 (best) BASIC22.58■■□□□ 1.21
Usp40Q8BWR4 Rbfox2-207ENSMUST00000227533 1041 ntBASIC22.58■■□□□ 1.21
Usp40Q8BWR4 Apopt1-201ENSMUST00000040519 1065 ntAPPRIS P3 TSL 1 (best) BASIC22.58■■□□□ 1.21
Usp40Q8BWR4 Dph1-201ENSMUST00000044949 2139 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.2
Usp40Q8BWR4 Dcaf12l2-201ENSMUST00000115057 2885 ntAPPRIS P1 BASIC22.58■■□□□ 1.2
Usp40Q8BWR4 Rgs6-206ENSMUST00000186309 1693 ntAPPRIS P4 TSL 5 BASIC22.58■■□□□ 1.2
Usp40Q8BWR4 Cap1-202ENSMUST00000106255 2737 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.2
Retrieved 100 of 76,532 protein–RNA pairs in 35.8 ms