Protein–RNA interactions for Protein: Q8BI79

Ccdc40, Coiled-coil domain-containing protein 40, mousemouse

Predictions only

Length 1,192 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc40Q8BI79 Slc13a3-202ENSMUST00000109279 3131 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
Ccdc40Q8BI79 Pi4k2b-201ENSMUST00000031081 3139 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
Ccdc40Q8BI79 Unc13b-203ENSMUST00000107953 5034 ntAPPRIS ALT2 TSL 5 BASIC17.25■□□□□ 0.35
Ccdc40Q8BI79 Shank3-202ENSMUST00000066545 4702 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
Ccdc40Q8BI79 Tm9sf2-203ENSMUST00000171318 1494 ntTSL 5 BASIC17.25■□□□□ 0.35
Ccdc40Q8BI79 Gprin1-202ENSMUST00000135343 4248 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Ccdc40Q8BI79 Fbxl16-201ENSMUST00000045692 3478 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
Ccdc40Q8BI79 Phtf1-202ENSMUST00000063717 3327 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Ccdc40Q8BI79 Tmem260-201ENSMUST00000111735 5485 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
Ccdc40Q8BI79 Plac9a-201ENSMUST00000052286 1555 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Ccdc40Q8BI79 Agbl4-205ENSMUST00000106591 1406 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
Ccdc40Q8BI79 Insig2-203ENSMUST00000159085 1252 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Ccdc40Q8BI79 Gm18958-201ENSMUST00000174258 762 ntBASIC17.25■□□□□ 0.35
Ccdc40Q8BI79 Gm27000-201ENSMUST00000182943 842 ntBASIC17.25■□□□□ 0.35
Ccdc40Q8BI79 Gm28876-201ENSMUST00000188137 703 ntTSL 3 BASIC17.25■□□□□ 0.35
Ccdc40Q8BI79 Fam83f-201ENSMUST00000023044 2988 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Ccdc40Q8BI79 Akip1-201ENSMUST00000033335 1028 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Ccdc40Q8BI79 Igf2-202ENSMUST00000097936 2503 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
Ccdc40Q8BI79 Hnrnpul1-205ENSMUST00000206832 3784 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Ccdc40Q8BI79 Rbm26-202ENSMUST00000100327 3634 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Ccdc40Q8BI79 Nrbp1-207ENSMUST00000202576 2221 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
Ccdc40Q8BI79 Nrbp1-201ENSMUST00000031034 2203 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Ccdc40Q8BI79 Rara-204ENSMUST00000107475 2469 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Ccdc40Q8BI79 Scara3-201ENSMUST00000042046 3597 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Ccdc40Q8BI79 Mfsd4b1-201ENSMUST00000163705 2677 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Ccdc40Q8BI79 Med7-203ENSMUST00000109232 2547 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Ccdc40Q8BI79 Cend1-202ENSMUST00000124444 1733 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Ccdc40Q8BI79 2810410L24Rik-202ENSMUST00000155681 2615 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
Ccdc40Q8BI79 Kat14-208ENSMUST00000147747 3299 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
Ccdc40Q8BI79 Gbe1-206ENSMUST00000170464 2736 ntAPPRIS ALT2 TSL 5 BASIC17.24■□□□□ 0.35
Ccdc40Q8BI79 Fbxl7-201ENSMUST00000059204 4632 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Ccdc40Q8BI79 Htr5b-201ENSMUST00000055884 1935 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Ccdc40Q8BI79 Pgap3-205ENSMUST00000128897 1264 ntTSL 5 BASIC17.24■□□□□ 0.35
Ccdc40Q8BI79 Gm14968-201ENSMUST00000155528 769 ntTSL 3 BASIC17.24■□□□□ 0.35
Ccdc40Q8BI79 Pih1d2-201ENSMUST00000000171 1256 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Ccdc40Q8BI79 2310033P09Rik-201ENSMUST00000020719 1285 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Ccdc40Q8BI79 AC135963.1-201ENSMUST00000211640 717 ntBASIC17.24■□□□□ 0.35
Ccdc40Q8BI79 4930554C24Rik-202ENSMUST00000216019 1159 ntTSL 5 BASIC17.24■□□□□ 0.35
Ccdc40Q8BI79 Cacna1i-202ENSMUST00000160424 9781 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Ccdc40Q8BI79 Gm26548-201ENSMUST00000181165 2029 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
Ccdc40Q8BI79 Kctd12-202ENSMUST00000184744 6057 ntAPPRIS P1 BASIC17.24■□□□□ 0.35
Ccdc40Q8BI79 Fmnl3-203ENSMUST00000120633 4290 ntAPPRIS ALT2 TSL 5 BASIC17.24■□□□□ 0.35
Ccdc40Q8BI79 Nudt16-201ENSMUST00000035179 1631 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Ccdc40Q8BI79 Tnfrsf25-202ENSMUST00000035275 1603 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
Ccdc40Q8BI79 Relt-201ENSMUST00000008462 2851 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Ccdc40Q8BI79 Npffr1-201ENSMUST00000020287 3479 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
Ccdc40Q8BI79 Usp27x-201ENSMUST00000115744 3240 ntAPPRIS P1 BASIC17.24■□□□□ 0.35
Ccdc40Q8BI79 Svip-201ENSMUST00000098414 3053 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Ccdc40Q8BI79 Kif5b-201ENSMUST00000025083 6032 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Ccdc40Q8BI79 Kdelr2-201ENSMUST00000110731 1829 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Ccdc40Q8BI79 Ccdc166-202ENSMUST00000183130 1563 ntAPPRIS P1 TSL 2 BASIC17.23■□□□□ 0.35
Ccdc40Q8BI79 Bfsp2-201ENSMUST00000124310 1662 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Ccdc40Q8BI79 Tmem150b-202ENSMUST00000086364 2822 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
Ccdc40Q8BI79 Fam71a-201ENSMUST00000171798 2234 ntAPPRIS P1 BASIC17.23■□□□□ 0.35
Ccdc40Q8BI79 Il6st-206ENSMUST00000183886 3004 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
Ccdc40Q8BI79 Cutc-202ENSMUST00000112047 1233 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Ccdc40Q8BI79 Gm13647-201ENSMUST00000154654 622 ntTSL 5 BASIC17.23■□□□□ 0.35
Ccdc40Q8BI79 Creb1-203ENSMUST00000171164 1287 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
Ccdc40Q8BI79 Rps2-ps3-201ENSMUST00000213102 832 ntBASIC17.23■□□□□ 0.35
Ccdc40Q8BI79 Pigf-201ENSMUST00000024957 988 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Ccdc40Q8BI79 Gzmd-201ENSMUST00000082093 964 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Ccdc40Q8BI79 Tbc1d19-201ENSMUST00000037337 2273 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Ccdc40Q8BI79 Adcy5-201ENSMUST00000114913 7007 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Ccdc40Q8BI79 Trmt2a-203ENSMUST00000115640 2367 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
Ccdc40Q8BI79 Fez2-202ENSMUST00000112487 2020 ntAPPRIS ALT1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Ccdc40Q8BI79 Pias4-201ENSMUST00000005064 2571 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Ccdc40Q8BI79 Zcchc17-202ENSMUST00000134159 2113 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Ccdc40Q8BI79 Mtif3-201ENSMUST00000016654 2131 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Ccdc40Q8BI79 Tox2-205ENSMUST00000165937 1675 ntAPPRIS P2 TSL 5 BASIC17.23■□□□□ 0.35
Ccdc40Q8BI79 Prss53-202ENSMUST00000205300 1662 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
Ccdc40Q8BI79 Tmem163-203ENSMUST00000160616 2657 ntAPPRIS P1 TSL 2 BASIC17.23■□□□□ 0.35
Ccdc40Q8BI79 Cyb561d2-201ENSMUST00000041459 1786 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Ccdc40Q8BI79 Taf5l-202ENSMUST00000165628 2973 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Ccdc40Q8BI79 Pde4a-201ENSMUST00000003395 2524 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
Ccdc40Q8BI79 Cdc42ep3-201ENSMUST00000068958 1967 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Ccdc40Q8BI79 Trim25-202ENSMUST00000100627 1433 ntTSL 5 BASIC17.22■□□□□ 0.35
Ccdc40Q8BI79 Psip1-201ENSMUST00000030207 3251 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Ccdc40Q8BI79 Rgl1-201ENSMUST00000027760 4572 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
Ccdc40Q8BI79 Pfkfb4-203ENSMUST00000198140 3488 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Ccdc40Q8BI79 Lhfpl4-201ENSMUST00000162280 4762 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Ccdc40Q8BI79 Fam169b-201ENSMUST00000098378 2776 ntTSL 5 BASIC17.22■□□□□ 0.35
Ccdc40Q8BI79 Sct-202ENSMUST00000167790 507 ntAPPRIS P3 TSL 1 (best) BASIC17.22■□□□□ 0.35
Ccdc40Q8BI79 Slc25a41-202ENSMUST00000169012 1172 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
Ccdc40Q8BI79 D330020A13Rik-201ENSMUST00000181956 1069 ntAPPRIS P1 BASIC17.22■□□□□ 0.35
Ccdc40Q8BI79 Gm17949-201ENSMUST00000210548 1179 ntAPPRIS P1 TSL 5 BASIC17.22■□□□□ 0.35
Ccdc40Q8BI79 Rgcc-201ENSMUST00000022595 918 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Ccdc40Q8BI79 Lce1m-201ENSMUST00000029520 874 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Ccdc40Q8BI79 Cldn22-201ENSMUST00000038693 995 ntAPPRIS P1 BASIC17.22■□□□□ 0.35
Ccdc40Q8BI79 Sct-201ENSMUST00000046156 534 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
Ccdc40Q8BI79 Tmem205-201ENSMUST00000046831 785 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Ccdc40Q8BI79 Nme2-202ENSMUST00000072566 734 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Ccdc40Q8BI79 Sarm1-202ENSMUST00000108287 4868 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
Ccdc40Q8BI79 Fbxl3-206ENSMUST00000145693 3352 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Ccdc40Q8BI79 Krt81-201ENSMUST00000061185 1857 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Ccdc40Q8BI79 Atp6v1c1-201ENSMUST00000022904 2071 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Ccdc40Q8BI79 Tbx21-201ENSMUST00000001484 2488 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Ccdc40Q8BI79 Rrp15-201ENSMUST00000001339 1321 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Ccdc40Q8BI79 Tnfrsf13c-201ENSMUST00000089161 1906 ntAPPRIS P2 TSL 1 (best) BASIC17.21■□□□□ 0.35
Ccdc40Q8BI79 Slc30a2-201ENSMUST00000081094 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
Ccdc40Q8BI79 Tcf3-207ENSMUST00000105343 2920 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
Retrieved 100 of 76,532 protein–RNA pairs in 26.5 ms