Protein–RNA interactions for Protein: Q80SX8

Pif1, ATP-dependent DNA helicase PIF1, mousemouse

Predictions only

Length 650 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Pif1Q80SX8 Gm29707-201ENSMUST00000196325 491 ntBASIC15.23■□□□□ 0.03
Pif1Q80SX8 Ppp1r27-201ENSMUST00000026121 771 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Pif1Q80SX8 Angptl8-201ENSMUST00000058777 865 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Pif1Q80SX8 Sec61b-201ENSMUST00000065678 564 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Pif1Q80SX8 Crebzf-201ENSMUST00000061767 3376 ntAPPRIS P1 BASIC15.23■□□□□ 0.03
Pif1Q80SX8 Trim14-202ENSMUST00000102924 1582 ntTSL 2 BASIC15.23■□□□□ 0.03
Pif1Q80SX8 Htr5b-201ENSMUST00000055884 1935 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Pif1Q80SX8 Dlgap4-205ENSMUST00000109567 4840 ntAPPRIS ALT2 TSL 5 BASIC15.23■□□□□ 0.03
Pif1Q80SX8 Gm8909-201ENSMUST00000040467 1357 ntAPPRIS P2 TSL 1 (best) BASIC15.23■□□□□ 0.03
Pif1Q80SX8 Snx14-205ENSMUST00000173011 2238 ntTSL 5 BASIC15.23■□□□□ 0.03
Pif1Q80SX8 Rilpl1-201ENSMUST00000062153 2249 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Pif1Q80SX8 Stk32c-202ENSMUST00000165870 1883 ntTSL 5 BASIC15.23■□□□□ 0.03
Pif1Q80SX8 Bfsp2-201ENSMUST00000124310 1662 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Pif1Q80SX8 Ocel1-202ENSMUST00000110051 2179 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Pif1Q80SX8 Bhlhb9-201ENSMUST00000068755 2823 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Pif1Q80SX8 Gm16201-202ENSMUST00000139218 2330 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Pif1Q80SX8 Dtx3-202ENSMUST00000116229 1994 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Pif1Q80SX8 Evc-202ENSMUST00000114148 2119 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
Pif1Q80SX8 Mtif3-201ENSMUST00000016654 2131 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Pif1Q80SX8 Emx2-201ENSMUST00000062216 2916 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Pif1Q80SX8 Arfip2-202ENSMUST00000084782 2254 ntAPPRIS P2 TSL 5 BASIC15.22■□□□□ 0.03
Pif1Q80SX8 Tfap2a-208ENSMUST00000224999 2058 ntAPPRIS ALT1 BASIC15.22■□□□□ 0.03
Pif1Q80SX8 Upp1-205ENSMUST00000164791 1252 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Pif1Q80SX8 Sbsn-202ENSMUST00000182227 432 ntAPPRIS ALT2 TSL 5 BASIC15.22■□□□□ 0.03
Pif1Q80SX8 Sbsn-203ENSMUST00000182229 732 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
Pif1Q80SX8 Gm38186-201ENSMUST00000192574 449 ntTSL 3 BASIC15.22■□□□□ 0.03
Pif1Q80SX8 Tecr-201ENSMUST00000019382 1158 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Pif1Q80SX8 Ssr2-205ENSMUST00000193934 569 ntTSL 3 BASIC15.22■□□□□ 0.03
Pif1Q80SX8 Gm44450-201ENSMUST00000199528 114 ntBASIC15.22■□□□□ 0.03
Pif1Q80SX8 Vegfc-203ENSMUST00000210831 555 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Pif1Q80SX8 AC108846.1-201ENSMUST00000214531 513 ntBASIC15.22■□□□□ 0.03
Pif1Q80SX8 AC159301.1-201ENSMUST00000225130 1182 ntBASIC15.22■□□□□ 0.03
Pif1Q80SX8 Bpifa3-201ENSMUST00000028984 1107 ntAPPRIS P3 TSL 1 (best) BASIC15.22■□□□□ 0.03
Pif1Q80SX8 Adrb2-201ENSMUST00000053640 2143 ntAPPRIS P1 BASIC15.22■□□□□ 0.03
Pif1Q80SX8 Alcam-201ENSMUST00000023312 6036 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Pif1Q80SX8 Ankrd17-203ENSMUST00000168058 9311 ntAPPRIS ALT2 TSL 5 BASIC15.22■□□□□ 0.03
Pif1Q80SX8 Kat14-208ENSMUST00000147747 3299 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
Pif1Q80SX8 Slc25a3-206ENSMUST00000170810 1341 ntAPPRIS ALT2 TSL 5 BASIC15.21■□□□□ 0.03
Pif1Q80SX8 Xpo4-209ENSMUST00000174545 8680 ntAPPRIS P2 TSL 1 (best) BASIC15.21■□□□□ 0.03
Pif1Q80SX8 Iqgap2-201ENSMUST00000068603 5771 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Pif1Q80SX8 Vrk2-201ENSMUST00000078362 1889 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Pif1Q80SX8 Fgf4-201ENSMUST00000060336 3030 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Pif1Q80SX8 A730089K16Rik-201ENSMUST00000194526 2427 ntBASIC15.21■□□□□ 0.03
Pif1Q80SX8 Klf9-201ENSMUST00000036884 3263 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Pif1Q80SX8 Speg-202ENSMUST00000113587 1254 ntTSL 5 BASIC15.21■□□□□ 0.03
Pif1Q80SX8 Hnrnpa1l2-ps-201ENSMUST00000129154 964 ntBASIC15.21■□□□□ 0.03
Pif1Q80SX8 Gm21887-202ENSMUST00000179760 483 ntAPPRIS ALT2 TSL 5 BASIC15.21■□□□□ 0.03
Pif1Q80SX8 A830052D11Rik-201ENSMUST00000181729 1130 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
Pif1Q80SX8 Gm18421-201ENSMUST00000204122 625 ntBASIC15.21■□□□□ 0.03
Pif1Q80SX8 Npcd-201ENSMUST00000023060 1162 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.03
Pif1Q80SX8 Cnpy1-202ENSMUST00000118882 1984 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
Pif1Q80SX8 Acaa1a-201ENSMUST00000039784 1762 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
Pif1Q80SX8 Cyb561d2-201ENSMUST00000041459 1786 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
Pif1Q80SX8 Myo5a-214ENSMUST00000155282 6372 ntAPPRIS P5 TSL 5 BASIC15.21■□□□□ 0.02
Pif1Q80SX8 Taf6l-211ENSMUST00000177056 2006 ntTSL 5 BASIC15.21■□□□□ 0.02
Pif1Q80SX8 Hdhd2-202ENSMUST00000097521 1716 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
Pif1Q80SX8 Dlgap4-212ENSMUST00000169464 4851 ntTSL 5 BASIC15.2■□□□□ 0.02
Pif1Q80SX8 F12-201ENSMUST00000021948 1960 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Pif1Q80SX8 Sept8-203ENSMUST00000120878 1806 ntAPPRIS ALT2 TSL 5 BASIC15.2■□□□□ 0.02
Pif1Q80SX8 Dusp4-201ENSMUST00000033930 2740 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Pif1Q80SX8 Acbd4-201ENSMUST00000024492 2075 ntAPPRIS P1 TSL 5 BASIC15.2■□□□□ 0.02
Pif1Q80SX8 Arhgef7-205ENSMUST00000110909 4926 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
Pif1Q80SX8 Crhr2-203ENSMUST00000114374 1440 ntAPPRIS ALT1 TSL 5 BASIC15.2■□□□□ 0.02
Pif1Q80SX8 Madcam1-201ENSMUST00000020554 1436 ntAPPRIS P2 TSL 1 (best) BASIC15.2■□□□□ 0.02
Pif1Q80SX8 B3gnt4-201ENSMUST00000031384 1423 ntAPPRIS P1 BASIC15.2■□□□□ 0.02
Pif1Q80SX8 Cep83-201ENSMUST00000020212 3639 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Pif1Q80SX8 Amacr-201ENSMUST00000070877 2577 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Pif1Q80SX8 Mansc4-201ENSMUST00000100780 1125 ntAPPRIS P2 TSL 1 (best) BASIC15.2■□□□□ 0.02
Pif1Q80SX8 Oraov1-203ENSMUST00000105895 1016 ntAPPRIS ALT2 TSL 2 BASIC15.2■□□□□ 0.02
Pif1Q80SX8 Drap1-202ENSMUST00000113673 744 ntTSL 2 BASIC15.2■□□□□ 0.02
Pif1Q80SX8 Gm12644-201ENSMUST00000119935 606 ntBASIC15.2■□□□□ 0.02
Pif1Q80SX8 Lhx1os-201ENSMUST00000126072 589 ntTSL 3 BASIC15.2■□□□□ 0.02
Pif1Q80SX8 Gm16272-201ENSMUST00000128218 388 ntTSL 2 BASIC15.2■□□□□ 0.02
Pif1Q80SX8 Mkln1os-202ENSMUST00000144232 964 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
Pif1Q80SX8 Prr3-202ENSMUST00000165613 767 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
Pif1Q80SX8 Gm18733-201ENSMUST00000173950 856 ntBASIC15.2■□□□□ 0.02
Pif1Q80SX8 Cyhr1-204ENSMUST00000177359 1110 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
Pif1Q80SX8 Zfp747-202ENSMUST00000205832 618 ntTSL 3 BASIC15.2■□□□□ 0.02
Pif1Q80SX8 Hs3st2-202ENSMUST00000206880 1149 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
Pif1Q80SX8 Gm18195-201ENSMUST00000207604 706 ntBASIC15.2■□□□□ 0.02
Pif1Q80SX8 AC153556.1-201ENSMUST00000215135 794 ntTSL 5 BASIC15.2■□□□□ 0.02
Pif1Q80SX8 Rhoc-201ENSMUST00000002303 1202 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Pif1Q80SX8 Prdx6-201ENSMUST00000051925 959 ntTSL 2 BASIC15.2■□□□□ 0.02
Pif1Q80SX8 Dars-202ENSMUST00000064309 645 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
Pif1Q80SX8 Rhog-201ENSMUST00000098230 1269 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Pif1Q80SX8 Zfp655-206ENSMUST00000200039 1765 ntAPPRIS ALT1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Pif1Q80SX8 Sfrp2-201ENSMUST00000029625 2003 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Pif1Q80SX8 Zfp384-208ENSMUST00000112428 3132 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
Pif1Q80SX8 Trim67-202ENSMUST00000167588 8735 ntAPPRIS P1 TSL 5 BASIC15.2■□□□□ 0.02
Pif1Q80SX8 Lancl2-202ENSMUST00000072954 2245 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Pif1Q80SX8 Ndufaf3-201ENSMUST00000074208 1487 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Pif1Q80SX8 Ythdc1-203ENSMUST00000120498 3269 ntAPPRIS ALT2 TSL 5 BASIC15.19■□□□□ 0.02
Pif1Q80SX8 Celf6-204ENSMUST00000121266 2610 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
Pif1Q80SX8 Fam69a-201ENSMUST00000031198 2721 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Pif1Q80SX8 Cops6-201ENSMUST00000019638 1787 ntAPPRIS P2 TSL 1 (best) BASIC15.19■□□□□ 0.02
Pif1Q80SX8 Bpifb4-203ENSMUST00000109759 2115 ntAPPRIS P2 TSL 5 BASIC15.19■□□□□ 0.02
Pif1Q80SX8 Kcnj4-201ENSMUST00000057801 2148 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Pif1Q80SX8 Vsig10l-204ENSMUST00000203769 2473 ntAPPRIS P2 TSL 1 (best) BASIC15.19■□□□□ 0.02
Pif1Q80SX8 Bend6-202ENSMUST00000115161 2231 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
Pif1Q80SX8 Nfs1-202ENSMUST00000109600 709 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
Retrieved 100 of 76,532 protein–RNA pairs in 29.9 ms