Protein–RNA interactions for Protein: Q5SNZ0

Ccdc88a, Girdin, mousemouse

Predictions only

Length 1,873 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc88aQ5SNZ0 Pex11a-201ENSMUST00000032761 2241 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Ccdc88aQ5SNZ0 Casp8-204ENSMUST00000191201 1849 ntAPPRIS ALT2 TSL 5 BASIC18.96■□□□□ 0.62
Ccdc88aQ5SNZ0 Fiz1-202ENSMUST00000165320 2653 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Ccdc88aQ5SNZ0 U2af2-209ENSMUST00000209099 2088 ntAPPRIS P3 TSL 1 (best) BASIC18.95■□□□□ 0.62
Ccdc88aQ5SNZ0 Gm13216-201ENSMUST00000117145 591 ntBASIC18.95■□□□□ 0.62
Ccdc88aQ5SNZ0 Gm13036-201ENSMUST00000117799 748 ntBASIC18.95■□□□□ 0.62
Ccdc88aQ5SNZ0 Gm11729-201ENSMUST00000124901 713 ntTSL 3 BASIC18.95■□□□□ 0.62
Ccdc88aQ5SNZ0 Gm43332-201ENSMUST00000202511 1044 ntBASIC18.95■□□□□ 0.62
Ccdc88aQ5SNZ0 Gm44430-201ENSMUST00000203376 995 ntBASIC18.95■□□□□ 0.62
Ccdc88aQ5SNZ0 Il3ra-205ENSMUST00000224877 1128 ntAPPRIS ALT2 BASIC18.95■□□□□ 0.62
Ccdc88aQ5SNZ0 4930451I11Rik-201ENSMUST00000061695 481 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Ccdc88aQ5SNZ0 Kcnn1-207ENSMUST00000212509 1608 ntAPPRIS ALT2 TSL 5 BASIC18.95■□□□□ 0.62
Ccdc88aQ5SNZ0 Tom1l2-201ENSMUST00000064019 2151 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
Ccdc88aQ5SNZ0 Gm7292-201ENSMUST00000194706 2527 ntBASIC18.95■□□□□ 0.62
Ccdc88aQ5SNZ0 Wipf1-202ENSMUST00000102679 2039 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Ccdc88aQ5SNZ0 Anks1b-219ENSMUST00000182600 1697 ntTSL 5 BASIC18.95■□□□□ 0.62
Ccdc88aQ5SNZ0 Ndufv2-203ENSMUST00000143987 1540 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Ccdc88aQ5SNZ0 Baiap2-202ENSMUST00000075180 3518 ntAPPRIS ALT2 TSL 1 (best) BASIC18.95■□□□□ 0.62
Ccdc88aQ5SNZ0 Mrpl39-201ENSMUST00000116584 2294 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Ccdc88aQ5SNZ0 Trim33-202ENSMUST00000106860 5025 ntAPPRIS ALT2 TSL 1 (best) BASIC18.95■□□□□ 0.62
Ccdc88aQ5SNZ0 Spata6-201ENSMUST00000038868 2466 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Ccdc88aQ5SNZ0 Btf3-204ENSMUST00000134542 780 ntAPPRIS P1 TSL 2 BASIC18.94■□□□□ 0.62
Ccdc88aQ5SNZ0 Gm28411-202ENSMUST00000191318 464 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
Ccdc88aQ5SNZ0 Gm2756-201ENSMUST00000195851 400 ntBASIC18.94■□□□□ 0.62
Ccdc88aQ5SNZ0 Gm13830-205ENSMUST00000201195 1155 ntBASIC18.94■□□□□ 0.62
Ccdc88aQ5SNZ0 Gm42670-201ENSMUST00000201816 1292 ntBASIC18.94■□□□□ 0.62
Ccdc88aQ5SNZ0 Arrdc1-201ENSMUST00000028349 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC18.94■□□□□ 0.62
Ccdc88aQ5SNZ0 Grwd1-201ENSMUST00000107723 1898 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Ccdc88aQ5SNZ0 Trim31-201ENSMUST00000078438 2257 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Ccdc88aQ5SNZ0 Nkpd1-201ENSMUST00000078908 2753 ntAPPRIS P2 TSL 1 (best) BASIC18.94■□□□□ 0.62
Ccdc88aQ5SNZ0 Cdc42ep3-201ENSMUST00000068958 1967 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Ccdc88aQ5SNZ0 Foxa3-201ENSMUST00000036018 2037 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Ccdc88aQ5SNZ0 Csnk1e-201ENSMUST00000117786 2694 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Ccdc88aQ5SNZ0 Stxbp5l-202ENSMUST00000114775 1691 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
Ccdc88aQ5SNZ0 Hspa8-201ENSMUST00000015800 2394 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Ccdc88aQ5SNZ0 Mff-211ENSMUST00000161648 1715 ntTSL 5 BASIC18.94■□□□□ 0.62
Ccdc88aQ5SNZ0 Gm23935-201ENSMUST00000102303 57 ntBASIC18.94■□□□□ 0.62
Ccdc88aQ5SNZ0 Gm24270-201ENSMUST00000102326 57 ntBASIC18.94■□□□□ 0.62
Ccdc88aQ5SNZ0 Naa10-206ENSMUST00000114391 834 ntTSL 5 BASIC18.94■□□□□ 0.62
Ccdc88aQ5SNZ0 Gm24245-201ENSMUST00000157318 57 ntBASIC18.94■□□□□ 0.62
Ccdc88aQ5SNZ0 Tm4sf5-201ENSMUST00000019063 1000 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Ccdc88aQ5SNZ0 Gm44107-201ENSMUST00000203242 573 ntTSL 2 BASIC18.94■□□□□ 0.62
Ccdc88aQ5SNZ0 1810010D01Rik-204ENSMUST00000208788 889 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Ccdc88aQ5SNZ0 Hist1h2bg-201ENSMUST00000079251 618 ntAPPRIS P1 BASIC18.94■□□□□ 0.62
Ccdc88aQ5SNZ0 Hist1h2bn-201ENSMUST00000091709 381 ntAPPRIS P1 BASIC18.94■□□□□ 0.62
Ccdc88aQ5SNZ0 Antxr2-202ENSMUST00000199088 2739 ntAPPRIS ALT2 TSL 1 (best) BASIC18.94■□□□□ 0.62
Ccdc88aQ5SNZ0 Hira-201ENSMUST00000004222 4218 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Ccdc88aQ5SNZ0 Krt16-201ENSMUST00000007280 1565 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Ccdc88aQ5SNZ0 Rsph6a-202ENSMUST00000076887 1580 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
Ccdc88aQ5SNZ0 Nadk2-202ENSMUST00000100789 3578 ntAPPRIS ALT2 TSL 5 BASIC18.94■□□□□ 0.62
Ccdc88aQ5SNZ0 Chaf1b-201ENSMUST00000023666 1922 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Ccdc88aQ5SNZ0 Ercc6l2-203ENSMUST00000067821 2743 ntAPPRIS P1 TSL 5 BASIC18.93■□□□□ 0.62
Ccdc88aQ5SNZ0 Ttc13-201ENSMUST00000041614 3038 ntTSL 2 BASIC18.93■□□□□ 0.62
Ccdc88aQ5SNZ0 Pacs2-202ENSMUST00000220541 3101 ntAPPRIS ALT2 TSL 1 (best) BASIC18.93■□□□□ 0.62
Ccdc88aQ5SNZ0 Gm15442-201ENSMUST00000117905 1527 ntBASIC18.93■□□□□ 0.62
Ccdc88aQ5SNZ0 Gm13830-202ENSMUST00000144202 381 ntTSL 3 BASIC18.93■□□□□ 0.62
Ccdc88aQ5SNZ0 Gpaa1-201ENSMUST00000023221 2107 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Ccdc88aQ5SNZ0 Rogdi-202ENSMUST00000090453 652 ntTSL 5 BASIC18.93■□□□□ 0.62
Ccdc88aQ5SNZ0 Ccni-201ENSMUST00000058550 2804 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Ccdc88aQ5SNZ0 Dus3l-201ENSMUST00000007747 2303 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Ccdc88aQ5SNZ0 Zcchc24-201ENSMUST00000069180 4556 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Ccdc88aQ5SNZ0 Mettl27-204ENSMUST00000111219 1790 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Ccdc88aQ5SNZ0 Osbpl1a-205ENSMUST00000119512 1947 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
Ccdc88aQ5SNZ0 Gm28050-201ENSMUST00000124394 449 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
Ccdc88aQ5SNZ0 Psmb5-202ENSMUST00000227257 622 ntBASIC18.92■□□□□ 0.62
Ccdc88aQ5SNZ0 Fcnb-201ENSMUST00000028179 1170 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Ccdc88aQ5SNZ0 Dtd1-201ENSMUST00000028917 1350 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Ccdc88aQ5SNZ0 Mfsd10-203ENSMUST00000114331 1754 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Ccdc88aQ5SNZ0 Dohh-201ENSMUST00000072751 1444 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Ccdc88aQ5SNZ0 Lonp1-201ENSMUST00000047226 2963 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Ccdc88aQ5SNZ0 Coq6-201ENSMUST00000021661 1602 ntAPPRIS P2 TSL 1 (best) BASIC18.92■□□□□ 0.62
Ccdc88aQ5SNZ0 Selenoh-201ENSMUST00000102646 783 ntAPPRIS P2 TSL 1 (best) BASIC18.92■□□□□ 0.62
Ccdc88aQ5SNZ0 Frs3os-201ENSMUST00000136531 978 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
Ccdc88aQ5SNZ0 Tex30-213ENSMUST00000156392 1122 ntAPPRIS P1 TSL 5 BASIC18.92■□□□□ 0.62
Ccdc88aQ5SNZ0 Selenoh-206ENSMUST00000189988 390 ntTSL 3 BASIC18.92■□□□□ 0.62
Ccdc88aQ5SNZ0 Spata33-204ENSMUST00000212346 715 ntTSL 2 BASIC18.92■□□□□ 0.62
Ccdc88aQ5SNZ0 AL731706.1-201ENSMUST00000227806 944 ntAPPRIS ALT2 BASIC18.92■□□□□ 0.62
Ccdc88aQ5SNZ0 1110038F14Rik-201ENSMUST00000071792 1010 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Ccdc88aQ5SNZ0 Mis18a-201ENSMUST00000099554 1333 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Ccdc88aQ5SNZ0 Chsy3-201ENSMUST00000080721 2931 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Ccdc88aQ5SNZ0 Sclt1-201ENSMUST00000026866 3005 ntAPPRIS P1 TSL 5 BASIC18.91■□□□□ 0.62
Ccdc88aQ5SNZ0 Dcbld2-201ENSMUST00000046663 6561 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Ccdc88aQ5SNZ0 Mmp24-201ENSMUST00000029141 4306 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Ccdc88aQ5SNZ0 Gm15467-201ENSMUST00000120582 445 ntBASIC18.91■□□□□ 0.62
Ccdc88aQ5SNZ0 Smarca5-ps-202ENSMUST00000171805 1284 ntBASIC18.91■□□□□ 0.62
Ccdc88aQ5SNZ0 1700039E22Rik-201ENSMUST00000174082 770 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
Ccdc88aQ5SNZ0 Urah-207ENSMUST00000211372 688 ntAPPRIS P3 TSL 2 BASIC18.91■□□□□ 0.62
Ccdc88aQ5SNZ0 AC108846.1-201ENSMUST00000214531 513 ntBASIC18.91■□□□□ 0.62
Ccdc88aQ5SNZ0 AC133183.1-201ENSMUST00000221229 429 ntAPPRIS P1 TSL 3 BASIC18.91■□□□□ 0.62
Ccdc88aQ5SNZ0 Urah-201ENSMUST00000026554 890 ntAPPRIS P3 TSL 1 (best) BASIC18.91■□□□□ 0.62
Ccdc88aQ5SNZ0 Myl12b-201ENSMUST00000038446 1253 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Ccdc88aQ5SNZ0 Hist1h1a-201ENSMUST00000055770 741 ntAPPRIS P1 BASIC18.91■□□□□ 0.62
Ccdc88aQ5SNZ0 Fiz1-201ENSMUST00000077385 2546 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Ccdc88aQ5SNZ0 Xylt1-201ENSMUST00000032892 9020 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Ccdc88aQ5SNZ0 Grk6-201ENSMUST00000001115 2994 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
Ccdc88aQ5SNZ0 Fjx1-201ENSMUST00000099678 3134 ntAPPRIS P1 BASIC18.91■□□□□ 0.62
Ccdc88aQ5SNZ0 Fip1l1-203ENSMUST00000113535 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
Ccdc88aQ5SNZ0 Adrb2-201ENSMUST00000053640 2143 ntAPPRIS P1 BASIC18.91■□□□□ 0.62
Ccdc88aQ5SNZ0 Dlg3-202ENSMUST00000087984 4956 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
Ccdc88aQ5SNZ0 Rasd2-201ENSMUST00000132133 1299 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Retrieved 100 of 76,532 protein–RNA pairs in 31.4 ms