Protein–RNA interactions for Protein: Q3UH68

Limch1, LIM and calponin homology domains-containing protein 1, mousemouse

Predictions only

Length 1,057 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Limch1Q3UH68 Npas3-201ENSMUST00000101432 5879 ntAPPRIS P2 TSL 1 (best) BASIC19.46■□□□□ 0.71
Limch1Q3UH68 Lrig3-201ENSMUST00000074807 4016 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Limch1Q3UH68 Gm26803-201ENSMUST00000181705 2011 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
Limch1Q3UH68 Skap1-203ENSMUST00000100521 1539 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
Limch1Q3UH68 Skap1-204ENSMUST00000103154 1507 ntAPPRIS P3 TSL 1 (best) BASIC19.46■□□□□ 0.71
Limch1Q3UH68 Susd1-202ENSMUST00000107544 3220 ntAPPRIS ALT2 TSL 5 BASIC19.46■□□□□ 0.7
Limch1Q3UH68 Gm12359-201ENSMUST00000139017 1399 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
Limch1Q3UH68 Tead3-201ENSMUST00000114799 2448 ntAPPRIS P2 TSL 1 (best) BASIC19.45■□□□□ 0.7
Limch1Q3UH68 Baz1a-205ENSMUST00000173433 5788 ntAPPRIS P2 TSL 5 BASIC19.45■□□□□ 0.7
Limch1Q3UH68 Rnls-201ENSMUST00000096114 1597 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Limch1Q3UH68 Asph-210ENSMUST00000108337 2836 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
Limch1Q3UH68 Gm37166-201ENSMUST00000195473 2474 ntBASIC19.45■□□□□ 0.7
Limch1Q3UH68 Evc-202ENSMUST00000114148 2119 ntAPPRIS ALT2 TSL 1 (best) BASIC19.45■□□□□ 0.7
Limch1Q3UH68 Fbxl12os-202ENSMUST00000136376 2349 ntTSL 2 BASIC19.45■□□□□ 0.7
Limch1Q3UH68 3110002H16Rik-201ENSMUST00000025276 2170 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Limch1Q3UH68 Sap18-203ENSMUST00000111269 459 ntTSL 2 BASIC19.45■□□□□ 0.7
Limch1Q3UH68 Spdya-202ENSMUST00000124001 1247 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
Limch1Q3UH68 Gm26709-203ENSMUST00000223260 715 ntTSL 5 BASIC19.45■□□□□ 0.7
Limch1Q3UH68 Ube2t-201ENSMUST00000027687 1116 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Limch1Q3UH68 Gm45203-201ENSMUST00000206384 1831 ntBASIC19.45■□□□□ 0.7
Limch1Q3UH68 Itpkb-201ENSMUST00000070181 6235 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Limch1Q3UH68 Atxn7-201ENSMUST00000022257 6853 ntAPPRIS P2 TSL 1 (best) BASIC19.45■□□□□ 0.7
Limch1Q3UH68 Eme2-202ENSMUST00000121542 1521 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Limch1Q3UH68 Txndc11-201ENSMUST00000038424 3095 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Limch1Q3UH68 Rbm12b2-202ENSMUST00000095143 3147 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Limch1Q3UH68 4930448E22Rik-201ENSMUST00000181712 1581 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
Limch1Q3UH68 Aptx-203ENSMUST00000108103 2391 ntAPPRIS ALT2 TSL 5 BASIC19.44■□□□□ 0.7
Limch1Q3UH68 Rilpl1-201ENSMUST00000062153 2249 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Limch1Q3UH68 Hsf4-202ENSMUST00000163734 1630 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
Limch1Q3UH68 Kcnq2-201ENSMUST00000016491 3067 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
Limch1Q3UH68 Zkscan6-202ENSMUST00000071465 2270 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Limch1Q3UH68 Nucb2-201ENSMUST00000032895 1685 ntAPPRIS P2 TSL 1 (best) BASIC19.44■□□□□ 0.7
Limch1Q3UH68 Mocs1-202ENSMUST00000165390 729 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
Limch1Q3UH68 Mir1668-201ENSMUST00000184114 107 ntBASIC19.44■□□□□ 0.7
Limch1Q3UH68 Gm38282-201ENSMUST00000192751 695 ntTSL 5 BASIC19.44■□□□□ 0.7
Limch1Q3UH68 Gm44973-201ENSMUST00000207050 1003 ntAPPRIS P1 TSL 3 BASIC19.44■□□□□ 0.7
Limch1Q3UH68 Gpr137b-201ENSMUST00000021738 2971 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Limch1Q3UH68 Slc35d2-204ENSMUST00000222168 472 ntTSL 3 BASIC19.44■□□□□ 0.7
Limch1Q3UH68 AC159205.3-201ENSMUST00000224614 874 ntBASIC19.44■□□□□ 0.7
Limch1Q3UH68 Rpp25l-201ENSMUST00000038434 856 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Limch1Q3UH68 Olfr315-201ENSMUST00000081533 998 ntAPPRIS P1 BASIC19.44■□□□□ 0.7
Limch1Q3UH68 Pigw-202ENSMUST00000108080 1728 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Limch1Q3UH68 Klhl40-201ENSMUST00000098272 2370 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Limch1Q3UH68 Nsmf-207ENSMUST00000116574 2863 ntTSL 5 BASIC19.44■□□□□ 0.7
Limch1Q3UH68 Osbpl1a-208ENSMUST00000121888 2674 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
Limch1Q3UH68 Spata6-201ENSMUST00000038868 2466 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Limch1Q3UH68 Sgsm1-204ENSMUST00000112325 2274 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
Limch1Q3UH68 Nfe2l3-201ENSMUST00000005103 2544 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Limch1Q3UH68 Coro2a-202ENSMUST00000107756 4154 ntAPPRIS P3 TSL 1 (best) BASIC19.44■□□□□ 0.7
Limch1Q3UH68 4930448E22Rik-202ENSMUST00000215242 2102 ntTSL 5 BASIC19.43■□□□□ 0.7
Limch1Q3UH68 Yipf4-201ENSMUST00000024873 2133 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Limch1Q3UH68 Lonp2-201ENSMUST00000034141 2860 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Limch1Q3UH68 Lrrfip1-212ENSMUST00000189617 2155 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
Limch1Q3UH68 Eif4g3-202ENSMUST00000084214 6139 ntAPPRIS P2 TSL 1 (best) BASIC19.43■□□□□ 0.7
Limch1Q3UH68 Ndufs2-202ENSMUST00000111318 1545 ntTSL 5 BASIC19.43■□□□□ 0.7
Limch1Q3UH68 Gm5587-201ENSMUST00000206270 674 ntBASIC19.43■□□□□ 0.7
Limch1Q3UH68 Kiss1r-202ENSMUST00000219745 979 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
Limch1Q3UH68 Insl6-201ENSMUST00000052380 708 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Limch1Q3UH68 Slc44a1-201ENSMUST00000102911 3102 ntAPPRIS P2 TSL 1 (best) BASIC19.43■□□□□ 0.7
Limch1Q3UH68 Evx1-201ENSMUST00000031787 2877 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Limch1Q3UH68 Pou2f2-202ENSMUST00000108413 1599 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
Limch1Q3UH68 Shc1-202ENSMUST00000094378 2617 ntAPPRIS ALT1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Limch1Q3UH68 Spsb2-203ENSMUST00000112473 1322 ntBASIC19.43■□□□□ 0.7
Limch1Q3UH68 4930455H04Rik-201ENSMUST00000117592 1341 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Limch1Q3UH68 Avl9-201ENSMUST00000031805 6670 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Limch1Q3UH68 Tlk1-201ENSMUST00000038584 4280 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Limch1Q3UH68 Tnrc6c-202ENSMUST00000106344 8847 ntAPPRIS P1 TSL 5 BASIC19.43■□□□□ 0.7
Limch1Q3UH68 Wipf1-202ENSMUST00000102679 2039 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Limch1Q3UH68 Rasgrp1-201ENSMUST00000102534 5229 ntAPPRIS P1 TSL 5 BASIC19.42■□□□□ 0.7
Limch1Q3UH68 Gabra5-202ENSMUST00000206382 2607 ntAPPRIS P1 TSL 5 BASIC19.42■□□□□ 0.7
Limch1Q3UH68 Gm11748-201ENSMUST00000153825 1498 ntTSL 2 BASIC19.42■□□□□ 0.7
Limch1Q3UH68 Mis18bp1-208ENSMUST00000222244 2053 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
Limch1Q3UH68 Alcam-201ENSMUST00000023312 6036 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Limch1Q3UH68 Zic1-202ENSMUST00000065360 2811 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Limch1Q3UH68 Cul1-201ENSMUST00000031697 3161 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Limch1Q3UH68 Thrsp-201ENSMUST00000043077 1277 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Limch1Q3UH68 Krtcap3-201ENSMUST00000054829 904 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Limch1Q3UH68 Hbs1l-203ENSMUST00000092674 2625 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
Limch1Q3UH68 Cacna1c-216ENSMUST00000188522 7338 ntAPPRIS ALT2 TSL 5 BASIC19.42■□□□□ 0.7
Limch1Q3UH68 Sfrp1-201ENSMUST00000033952 4372 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Limch1Q3UH68 Jmy-201ENSMUST00000065537 8776 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Limch1Q3UH68 Glt28d2-201ENSMUST00000033643 2732 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Limch1Q3UH68 Pdgfa-202ENSMUST00000076095 2060 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Limch1Q3UH68 Mal-202ENSMUST00000028854 2778 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Limch1Q3UH68 Ryr2-203ENSMUST00000220597 4924 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
Limch1Q3UH68 Stambp-206ENSMUST00000206400 2144 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Limch1Q3UH68 Dnajc2-201ENSMUST00000030771 2133 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Limch1Q3UH68 Gm26697-201ENSMUST00000180898 1760 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
Limch1Q3UH68 Mtg2-202ENSMUST00000108901 1444 ntAPPRIS P1 TSL 5 BASIC19.42■□□□□ 0.7
Limch1Q3UH68 Pi4kb-202ENSMUST00000107251 2895 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
Limch1Q3UH68 Gfy-201ENSMUST00000179443 1849 ntAPPRIS P1 TSL 5 BASIC19.41■□□□□ 0.7
Limch1Q3UH68 Gm9917-202ENSMUST00000181099 1499 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
Limch1Q3UH68 Lad1-201ENSMUST00000038760 2993 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Limch1Q3UH68 Nox4-202ENSMUST00000068829 1861 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
Limch1Q3UH68 Abhd16a-201ENSMUST00000007251 1945 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Limch1Q3UH68 Dyx1c1-201ENSMUST00000034734 1975 ntAPPRIS P3 TSL 1 (best) BASIC19.41■□□□□ 0.7
Limch1Q3UH68 Pqlc1-202ENSMUST00000091798 1989 ntAPPRIS P3 TSL 5 BASIC19.41■□□□□ 0.7
Limch1Q3UH68 Fancg-201ENSMUST00000030165 2771 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Limch1Q3UH68 Bpifa3-202ENSMUST00000109746 1102 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
Limch1Q3UH68 Simc1-201ENSMUST00000118072 2116 ntAPPRIS ALT2 TSL 5 BASIC19.41■□□□□ 0.7
Retrieved 100 of 76,532 protein–RNA pairs in 17.9 ms