Protein–RNA interactions for Protein: P70390

Shox2, Short stature homeobox protein 2, mousemouse

Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Shox2P70390 Enah-204ENSMUST00000111030 2844 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
Shox2P70390 Fam135a-201ENSMUST00000027337 5536 ntAPPRIS P2 TSL 5 BASIC16.42■□□□□ 0.22
Shox2P70390 Fam178b-201ENSMUST00000114981 1659 ntAPPRIS P3 TSL 1 (best) BASIC16.42■□□□□ 0.22
Shox2P70390 Gja4-201ENSMUST00000053753 1685 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Shox2P70390 Slc38a10-203ENSMUST00000076697 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
Shox2P70390 Zic5-201ENSMUST00000039118 4767 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Shox2P70390 Sept6-203ENSMUST00000115239 1845 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
Shox2P70390 Foxl2-201ENSMUST00000051312 3256 ntAPPRIS P1 BASIC16.42■□□□□ 0.22
Shox2P70390 Chst14-202ENSMUST00000110837 1991 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
Shox2P70390 Gm26657-201ENSMUST00000181745 1308 ntAPPRIS P1 BASIC16.42■□□□□ 0.22
Shox2P70390 Klc1-202ENSMUST00000118471 2272 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
Shox2P70390 Hspa1a-201ENSMUST00000087328 2967 ntAPPRIS P1 BASIC16.41■□□□□ 0.22
Shox2P70390 Itpkb-201ENSMUST00000070181 6235 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Shox2P70390 Arhgap35-201ENSMUST00000075845 9147 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Shox2P70390 Ubtf-205ENSMUST00000107119 3013 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
Shox2P70390 Mir155hg-202ENSMUST00000185662 1362 ntTSL 5 BASIC16.41■□□□□ 0.22
Shox2P70390 Arf2-202ENSMUST00000063347 2660 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Shox2P70390 Rasal2-201ENSMUST00000078308 10047 ntAPPRIS P2 TSL 1 (best) BASIC16.41■□□□□ 0.22
Shox2P70390 1810059C17Rik-201ENSMUST00000125173 487 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
Shox2P70390 D330023K18Rik-201ENSMUST00000133550 920 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
Shox2P70390 Aldh1a3-204ENSMUST00000174215 1066 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
Shox2P70390 Zfp125-203ENSMUST00000208744 928 ntTSL 5 BASIC16.41■□□□□ 0.22
Shox2P70390 Hspe1-201ENSMUST00000075242 774 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Shox2P70390 Wwox-207ENSMUST00000160862 1715 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
Shox2P70390 Trim65-201ENSMUST00000067632 3048 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Shox2P70390 Acd-201ENSMUST00000042608 3154 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Shox2P70390 5730480H06Rik-205ENSMUST00000196950 3300 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Shox2P70390 Vcan-201ENSMUST00000109543 2321 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Shox2P70390 Papolb-201ENSMUST00000099400 4239 ntAPPRIS P1 BASIC16.41■□□□□ 0.22
Shox2P70390 Syt3-201ENSMUST00000118831 2627 ntAPPRIS P1 TSL 5 BASIC16.41■□□□□ 0.22
Shox2P70390 Gm43352-201ENSMUST00000196419 3065 ntBASIC16.41■□□□□ 0.22
Shox2P70390 Bclaf3-202ENSMUST00000112464 3366 ntAPPRIS P2 TSL 1 (best) BASIC16.41■□□□□ 0.22
Shox2P70390 Atp8b2-210ENSMUST00000168276 4265 ntAPPRIS P2 TSL 5 BASIC16.41■□□□□ 0.22
Shox2P70390 Rxra-201ENSMUST00000077257 4905 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Shox2P70390 Phospho2-201ENSMUST00000028494 2260 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Shox2P70390 Slc25a31-201ENSMUST00000091184 2128 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Shox2P70390 Btbd11-203ENSMUST00000105307 5788 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
Shox2P70390 6430573F11Rik-205ENSMUST00000171777 1825 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Shox2P70390 Lncpint-201ENSMUST00000115107 1676 ntTSL 5 BASIC16.4■□□□□ 0.22
Shox2P70390 Wdr20-205ENSMUST00000193053 1351 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
Shox2P70390 Dlgap3-202ENSMUST00000106092 2901 ntTSL 5 BASIC16.4■□□□□ 0.22
Shox2P70390 Sbno2-204ENSMUST00000217972 2462 ntTSL 2 BASIC16.4■□□□□ 0.22
Shox2P70390 Yipf5-201ENSMUST00000025364 2329 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Shox2P70390 Rnf138-201ENSMUST00000052396 3110 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
Shox2P70390 Plxdc1-202ENSMUST00000107564 619 ntTSL 2 BASIC16.4■□□□□ 0.22
Shox2P70390 Gng5-203ENSMUST00000119130 593 ntTSL 2 BASIC16.4■□□□□ 0.22
Shox2P70390 Gm7291-201ENSMUST00000199147 382 ntBASIC16.4■□□□□ 0.22
Shox2P70390 Hsbp1-201ENSMUST00000034300 1208 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Shox2P70390 Tmem171-201ENSMUST00000064347 1161 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Shox2P70390 Mrps2-201ENSMUST00000038600 2080 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Shox2P70390 Hsd17b12-201ENSMUST00000028619 1902 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Shox2P70390 Zbtb46-202ENSMUST00000087409 2577 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
Shox2P70390 Kbtbd2-201ENSMUST00000114321 3868 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Shox2P70390 Tesk2-203ENSMUST00000106459 2444 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
Shox2P70390 Tdrd7-201ENSMUST00000102929 3716 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
Shox2P70390 Cdk10-201ENSMUST00000036880 1642 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Shox2P70390 Tmem131-208ENSMUST00000194563 6698 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
Shox2P70390 Zbtb7c-201ENSMUST00000058997 4569 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Shox2P70390 Wnt5b-202ENSMUST00000118120 2115 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
Shox2P70390 Esr1-203ENSMUST00000105589 2612 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Shox2P70390 Tmem131l-201ENSMUST00000052342 4815 ntAPPRIS ALT2 TSL 5 BASIC16.4■□□□□ 0.22
Shox2P70390 Slc39a11-203ENSMUST00000106633 2688 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
Shox2P70390 Sim1-202ENSMUST00000219436 1687 ntTSL 5 BASIC16.4■□□□□ 0.22
Shox2P70390 Mief1-203ENSMUST00000228788 5352 ntAPPRIS P1 BASIC16.4■□□□□ 0.22
Shox2P70390 Fbxo42-201ENSMUST00000030757 5934 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Shox2P70390 Cadm2-203ENSMUST00000120898 2768 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
Shox2P70390 A830009L08Rik-201ENSMUST00000181054 2807 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
Shox2P70390 R74862-202ENSMUST00000133630 2482 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
Shox2P70390 Rtn4-201ENSMUST00000060992 1773 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Shox2P70390 Trim54-201ENSMUST00000013771 1434 ntAPPRIS P2 TSL 1 (best) BASIC16.39■□□□□ 0.21
Shox2P70390 Gm45472-201ENSMUST00000211295 1426 ntTSL 5 BASIC16.39■□□□□ 0.21
Shox2P70390 Sybu-201ENSMUST00000090057 3230 ntAPPRIS P4 TSL 1 (best) BASIC16.39■□□□□ 0.21
Shox2P70390 Ocel1-201ENSMUST00000002469 1611 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Shox2P70390 Gm11627-202ENSMUST00000107081 818 ntAPPRIS P1 TSL 2 BASIC16.39■□□□□ 0.21
Shox2P70390 Appbp2os-202ENSMUST00000206972 447 ntBASIC16.39■□□□□ 0.21
Shox2P70390 Gm40460-201ENSMUST00000211591 735 ntAPPRIS P1 BASIC16.39■□□□□ 0.21
Shox2P70390 Mtag2-201ENSMUST00000058665 714 ntBASIC16.39■□□□□ 0.21
Shox2P70390 Snrpc-201ENSMUST00000071006 870 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Shox2P70390 Npdc1-202ENSMUST00000071442 1485 ntAPPRIS P2 TSL 1 (best) BASIC16.39■□□□□ 0.21
Shox2P70390 Flywch1-202ENSMUST00000086325 2443 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Shox2P70390 Gpr180-201ENSMUST00000022728 1875 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Shox2P70390 Ggnbp2-211ENSMUST00000168434 3056 ntAPPRIS ALT1 TSL 5 BASIC16.39■□□□□ 0.21
Shox2P70390 Btd-201ENSMUST00000090147 2324 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Shox2P70390 Mios-201ENSMUST00000040017 3710 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
Shox2P70390 Eva1c-202ENSMUST00000099543 1554 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
Shox2P70390 E330011M16Rik-201ENSMUST00000193614 1794 ntBASIC16.38■□□□□ 0.21
Shox2P70390 Olah-203ENSMUST00000194918 1764 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Shox2P70390 Ccr9-202ENSMUST00000163559 3004 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Shox2P70390 Cfap97-202ENSMUST00000110376 2043 ntAPPRIS ALT2 TSL 5 BASIC16.38■□□□□ 0.21
Shox2P70390 Irf3-201ENSMUST00000003284 2031 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Shox2P70390 Asl-205ENSMUST00000161094 1824 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Shox2P70390 Tmem229b-201ENSMUST00000056660 3860 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Shox2P70390 Zfp385b-202ENSMUST00000111829 2073 ntTSL 5 BASIC16.38■□□□□ 0.21
Shox2P70390 Itpripl1-201ENSMUST00000110386 1898 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Shox2P70390 Ripk3-203ENSMUST00000178399 1865 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
Shox2P70390 Trim37-201ENSMUST00000041282 5632 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Shox2P70390 Tmem87b-201ENSMUST00000110325 4807 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Shox2P70390 Tmem54-203ENSMUST00000106064 1066 ntAPPRIS P3 TSL 1 (best) BASIC16.38■□□□□ 0.21
Shox2P70390 Syce3-201ENSMUST00000109314 448 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
Shox2P70390 Pde6d-203ENSMUST00000146220 879 ntTSL 2 BASIC16.38■□□□□ 0.21
Retrieved 100 of 76,532 protein–RNA pairs in 21.4 ms